FFCP PHASE1:Hg19::chr6:31550108..31550121,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:31550108..31550121,- to FFCP PHASE1:Hg19::chr6:31550108..31550121,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4050 | |EntrezGene=4050 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6711 | |HGNC=6711 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=61bp_to_ENST00000482429_5end | |||
|cluster_id=chr6:31550108..31550121,- | |||
|coexpression_cluster_id=C1103 | |||
|description=CAGE_peak_2_at_LTB_5end | |||
|id=chr6:31550108..31550121,- | |||
|ontology_enrichment_celltype=CL:0000738!1.78e-48!140;CL:0000037!2.97e-47!172;CL:0000566!2.97e-47!172;CL:0000988!5.77e-44!182;CL:0002032!2.24e-42!165;CL:0000837!2.24e-42!165;CL:0002087!3.34e-40!119;CL:0002031!3.86e-38!124;CL:0000542!4.75e-32!53;CL:0000051!4.75e-32!53;CL:0000838!2.45e-31!52;CL:0000791!1.90e-15!18;CL:0000789!1.90e-15!18;CL:0002420!1.90e-15!18;CL:0002419!1.90e-15!18;CL:0000790!1.90e-15!18;CL:0000084!2.02e-15!25;CL:0000827!2.02e-15!25;CL:0000945!4.26e-15!24;CL:0000826!4.26e-15!24;CL:0000766!1.92e-14!76;CL:0000763!1.92e-14!112;CL:0000049!1.92e-14!112;CL:0000557!6.94e-12!71;CL:0002057!2.11e-11!42;CL:0000236!3.01e-11!14;CL:0000839!8.51e-11!70;CL:0000625!1.76e-10!11;CL:0002194!6.20e-10!63;CL:0000576!6.20e-10!63;CL:0000040!6.20e-10!63;CL:0000559!6.20e-10!63;CL:0000860!6.31e-10!45;CL:0002009!6.60e-10!65 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.89e-27;53!CL:0000791;5.72e-24;18!CL:0000789;5.72e-24;18!CL:0002419;5.72e-24;18!CL:0000084;1.52e-21;25!CL:0000945;7.05e-21;24!CL:0000236;8.55e-17;13!CL:0000625;6.12e-16;11!CL:0002087;3.93e-11;104!CL:0000738;2.56e-09;136!CL:0000624;1.25e-08;6!CL:0000988;5.89e-08;177!CL:0000094;5.21e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,8.48e-46,53;CL:0000051,8.48e-46,53;CL:0000838,1.16e-44,52;CL:0000738,1.29e-44,136;CL:0000037,2.45e-42,168;CL:0000988,5.95e-40,177;CL:0002087,1.64e-38,115;CL:0002032,4.45e-36,161;CL:0000837,4.45e-36,161;CL:0002031,5.72e-33,120;CL:0000791,6.00e-24,18;CL:0000789,6.00e-24,18;CL:0002420,6.00e-24,18;CL:0002419,6.00e-24,18;CL:0000790,6.00e-24,18;CL:0000084,1.52e-21,25;CL:0000827,1.52e-21,25;CL:0000945,7.13e-21,24;CL:0000826,7.13e-21,24;CL:0000236,1.39e-17,14;CL:0000625,6.28e-16,11;CL:0000134,8.15e-09,354;CL:0000624,1.32e-08,6;CL:0002320,3.07e-08,361;CL:0002393,1.69e-07,9;CL:0002397,1.69e-07,9;CL:0000094,4.97e-07,8;CL:0000766,6.94e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000051;2.89e-27;53!CL:0000790;5.72e-24;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.97e-20!112;UBERON:0002390!1.41e-18!102;UBERON:0003061!1.41e-18!102;UBERON:0002405!7.94e-10!115;UBERON:0002371!1.21e-09!80;UBERON:0001474!5.21e-08!86;UBERON:0000178!8.55e-08!15;UBERON:0000179!8.55e-08!15;UBERON:0000463!8.55e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.26e-12;15!UBERON:0000179;1.26e-12;15!UBERON:0000463;1.26e-12;15!UBERON:0002390;7.10e-10;32!UBERON:0002193;5.40e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.53e-14,108;UBERON:0002390,1.30e-12,98;UBERON:0003061,1.30e-12,98;UBERON:0000178,1.36e-12,15;UBERON:0000179,1.36e-12,15;UBERON:0000463,1.36e-12,15;UBERON:0004177,1.15e-07,7;UBERON:0005057,1.15e-07,7;UBERON:0002405,1.67e-07,93;UBERON:0002384,1.82e-07,371;UBERON:0002370,7.30e-07,4;UBERON:0005058,7.30e-07,4;UBERON:0009113,7.30e-07,4;UBERON:0003295,7.30e-07,4;UBERON:0005562,7.30e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45185470921107,1.14940825229924,2.2826126580967,4.72037132218685,3.0706351847777,2.32224184974114,0,0,0,31.9164866390843,12.9374001563554,4.9912074686924,0,0.200544447470142,1.73608696572681,0.895661896959697,0.647787332037959,0.257575567634187,1.30858414901608,0.377875943688809,0.485168122375632,0.464858073811369,0.822335776043652,0.619412741790207,0.863077176966451,0,0.709446689665756,0,0,0,0.941211697713023,1.09162460023138,0.898893937780338,0.612167784741805,0.320929027076094,0.639337125799041,0.329851300186716,0.398927315243264,0.852449501065388,1.16083695451434,0,0.622822248995575,0,0,0.434377689410233,2.42159801053347,1.84138817993782,1.89877432464531,12.0415513197807,17.8587611970637,12.7891773760109,3.14520167210186,3.15371474967163,1.44653028027372,34.7715547364323,27.8483348078726,20.0930569141097,117.917483789086,111.412276697475,101.404054940445,110.523127644725,111.310084396011,120.698012390441,120.310166846845,139.291848162163,17.0763890732835,20.5533016279829,13.7618362125082,1.32171328579026,1.12101712596307,6.32121803460185,4.52432471261816,6.28817220398664,9.04646595597841,113.35244387488,12.71096839871,28.406868344084,17.534405556712,45.1212350384953,18.5601721709147,28.3563385067035,21.1227013736712,73.7806001619889,69.5817509445349,71.6949264072028,87.0502556025422,79.4060454914044,15.7183756951784,19.2629396224593,19.8617495229456,71.4981952421643,29.124757513746,35.0499994392283,19.9885556695407,30.9008451894374,30.6009223312517,44.6712460890736,23.3391434570548,29.4369205655162,29.983374372563,31.9649290259423,48.4465518183417,5.24177532384304,6.15112450302067,5.06885413589796,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,2.59637914923747,2.08955684759121,2.92507513141503,6.67773748054957,7.43593384014166,5.57186251994347,0.39752481473341,0,0.347140501607594,0,0.838998872419812,0.550236083880135,0,0,0.35576626268671,0.33472061276467,7.65375702507379,0,6.10155143870424,0,0.81014194788176,0.0892997282840798,0.22452937262617,0.563057402416611,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.818238361772504,0,0,0,0.232387885739037,0.621966330092223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8024298830249,0.245976877086227,0,0,0,0,0,0,0,0,0,0,2.30986316417718,1.38895653772983,3.04406643575357,0,0,0.738651018262192,0.234004265139238,0.594524649154913,0,1.17587489739202,0.850650583454319,0,0,0.383382679165211,2.46331618947972,0.264145302039678,0.829312462163088,0.288239906833923,1.00993946741104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.71634234366989,3.74358444383662,3.45004119775228,3.20857590699371,0,0,0,0,0,4.49404214368309,2.99161459204025,3.31532410748828,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,8.2707210449155,5.1771408196468,6.08347079479633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,2.25599806453706,0.15403067420883,0.784349769176855,0,0.633309773357254,1.13733384070897,0.510281115829547,0.215915916102139,1.54227252690289,0,1.50506932156456,0,1.66215201785745,0.223874754722178,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.165284915360978,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,21.8202471969833,29.0562138714103,25.0644762356632,25.0143364230678,34.1430686661541,22.6965658917451,24.3014146757152,16.6556287021797,0.106824071127473,0,0,6.50311112940016,0,2.98795742063339,0.159426272728822,3.39284931435788,14.1713973897951,37.2545505594034,0,0.561594356226918,0.228234679033192,0,0,15.5748435577475,8.35057990539238,1.41259795033733,0.425846237690326,0,0,0,0,0,0.835218521685727,0,1.08182271390393,0,0,0,0,0,0.780103689942349,0,0,0,0,0,0,0,0,0,0.597743964753209,15.1956153542131,0,0,0.246169610922139,0,0.449341755736634,0,0,0.493217028184668,14.3689855408164,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.153900517007594,0,0,0.0897576444097721,0,0,0,0.533034776018635,10.2193298195736,0.156980256395025,0.166211681900156,0,0,0,0,0,0.421996129056054,0.326465616318295,0,0,1.99052386215701,0.176915129006678,2.4441205797345,0,0,0,0,0.802577647298789,0,2.73682183823499,0,0,0,8.46935012340647,0,0.189559738885464,0,0,0,0,0,0,5.97680046662565,0,0,0.293977192243133,0,0.17472666824203,0,0,0,0,0.581934098930517,0,0.225980740780532,0,0,0,0.195551382734803,1.28254112402454,0.85381197895741,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,1.27746588066972,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0.76205998859206,0,0,0,0.137539436597234,0.83088067605837,0,0.77380195455795,0,0,0.394028536495991,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0.226624183040251,0.293104467356165,0,0,0.13223260174269,0,0,0.320362237703084,0.471612915298998,1.65695622138878,7.44249032717926,0.1976116318979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| ||
|short_description=p2@LTB | |||
}} | }} |
Latest revision as of 21:57, 17 September 2015
Short description: | p2@LTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LTB_5end |
Coexpression cluster: | C1103_CD19_CD4_CD8_Whole_blood_Burkitt_thymus |
Association with transcript: | 61bp_to_ENST00000482429_5end |
EntrezGene: | LTB |
HGNC: | 6711 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 8.48e-46 | 53 |
common lymphoid progenitor | 8.48e-46 | 53 |
lymphoid lineage restricted progenitor cell | 1.16e-44 | 52 |
leukocyte | 1.29e-44 | 136 |
hematopoietic stem cell | 2.45e-42 | 168 |
hematopoietic cell | 5.95e-40 | 177 |
nongranular leukocyte | 1.64e-38 | 115 |
hematopoietic oligopotent progenitor cell | 4.45e-36 | 161 |
hematopoietic multipotent progenitor cell | 4.45e-36 | 161 |
hematopoietic lineage restricted progenitor cell | 5.72e-33 | 120 |
mature alpha-beta T cell | 6.00e-24 | 18 |
alpha-beta T cell | 6.00e-24 | 18 |
immature T cell | 6.00e-24 | 18 |
mature T cell | 6.00e-24 | 18 |
immature alpha-beta T cell | 6.00e-24 | 18 |
T cell | 1.52e-21 | 25 |
pro-T cell | 1.52e-21 | 25 |
lymphocyte of B lineage | 7.13e-21 | 24 |
pro-B cell | 7.13e-21 | 24 |
B cell | 1.39e-17 | 14 |
CD8-positive, alpha-beta T cell | 6.28e-16 | 11 |
mesenchymal cell | 8.15e-09 | 354 |
CD4-positive, alpha-beta T cell | 1.32e-08 | 6 |
connective tissue cell | 3.07e-08 | 361 |
intermediate monocyte | 1.69e-07 | 9 |
CD14-positive, CD16-positive monocyte | 1.69e-07 | 9 |
granulocyte | 4.97e-07 | 8 |
myeloid leukocyte | 6.94e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.53e-14 | 108 |
hematopoietic system | 1.30e-12 | 98 |
blood island | 1.30e-12 | 98 |
blood | 1.36e-12 | 15 |
haemolymphatic fluid | 1.36e-12 | 15 |
organism substance | 1.36e-12 | 15 |
hemopoietic organ | 1.15e-07 | 7 |
immune organ | 1.15e-07 | 7 |
immune system | 1.67e-07 | 93 |
connective tissue | 1.82e-07 | 371 |
thymus | 7.30e-07 | 4 |
hemolymphoid system gland | 7.30e-07 | 4 |
thymic region | 7.30e-07 | 4 |
pharyngeal gland | 7.30e-07 | 4 |
thymus primordium | 7.30e-07 | 4 |