FFCP PHASE1:Hg19::chr13:76334798..76334809,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4008 | |EntrezGene=4008 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |HGNC=6646 | ||
|TSSclassifier=strong | |||
|UniProt=E9PLH4,Q8WWI1 | |UniProt=E9PLH4,Q8WWI1 | ||
|association_with_transcript=1bp_to_ENST00000465261,NM_015842,uc001vjv.2_5end | |association_with_transcript=1bp_to_ENST00000465261,NM_015842,uc001vjv.2_5end | ||
|cluster_id=chr13:76334798..76334809,+ | |||
|coexpression_cluster_id=C3384 | |coexpression_cluster_id=C3384 | ||
|description=CAGE_peak_20_at_LMO7_5end | |description=CAGE_peak_20_at_LMO7_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!1.25e-09!254;CL:0002076!9.30e-08!43 | |ontology_enrichment_celltype=CL:0000066!1.25e-09!254;CL:0002076!9.30e-08!43 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.37e-23;29!UBERON:0006595;1.08e-07;86!UBERON:0010122;3.23e-07;2!UBERON:0001041;6.13e-07;30 | |ontology_enrichment_development_v019=UBERON:0008947;1.37e-23;29!UBERON:0006595;1.08e-07;86!UBERON:0010122;3.23e-07;2!UBERON:0001041;6.13e-07;30 | ||
|ontology_enrichment_disease=DOID:305!2.12e-17!106;DOID:0050687!1.40e-09!143 | |ontology_enrichment_disease=DOID:305!2.12e-17!106;DOID:0050687!1.40e-09!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,9.79e-13,106;DOID:0050687,1.10e-08,143 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001737;3.87e-15;9!UBERON:0001557;3.87e-15;9!UBERON:0000065;3.59e-14;44!UBERON:0000369;9.06e-13;4!UBERON:0002435;9.06e-13;4!UBERON:0000204;9.06e-13;4!UBERON:0000072;4.07e-11;37!UBERON:0005383;3.41e-10;3!UBERON:0005382;3.41e-10;3!UBERON:0005178;5.46e-08;34!UBERON:0002224;5.46e-08;34!UBERON:0001004;6.35e-08;65!UBERON:0003127;1.31e-07;2!UBERON:0002394;1.51e-07;4!UBERON:0003928;1.51e-07;4!UBERON:0002294;1.85e-07;7!UBERON:0001173;1.85e-07;7!UBERON:0009663;2.69e-07;7!UBERON:0001873;3.23e-07;2!UBERON:0006562;3.23e-07;2!UBERON:0005181;4.00e-07;35!UBERON:0002370;7.74e-07;2!UBERON:0005058;7.74e-07;2!UBERON:0009113;7.74e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0001737;3.87e-15;9!UBERON:0001557;3.87e-15;9!UBERON:0000065;3.59e-14;44!UBERON:0000369;9.06e-13;4!UBERON:0002435;9.06e-13;4!UBERON:0000204;9.06e-13;4!UBERON:0000072;4.07e-11;37!UBERON:0005383;3.41e-10;3!UBERON:0005382;3.41e-10;3!UBERON:0005178;5.46e-08;34!UBERON:0002224;5.46e-08;34!UBERON:0001004;6.35e-08;65!UBERON:0003127;1.31e-07;2!UBERON:0002394;1.51e-07;4!UBERON:0003928;1.51e-07;4!UBERON:0002294;1.85e-07;7!UBERON:0001173;1.85e-07;7!UBERON:0009663;2.69e-07;7!UBERON:0001873;3.23e-07;2!UBERON:0006562;3.23e-07;2!UBERON:0005181;4.00e-07;35!UBERON:0002370;7.74e-07;2!UBERON:0005058;7.74e-07;2!UBERON:0009113;7.74e-07;2 | ||
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| ||
|short_description=p20@LMO7 | |short_description=p20@LMO7 | ||
}} | }} |
Latest revision as of 00:10, 18 September 2015
Short description: | p20@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_LMO7_5end |
Coexpression cluster: | C3384_lung_amniotic_signet_papillotubular_prostate_gall_Hepatocyte |
Association with transcript: | 1bp_to_ENST00000465261, NM_015842, uc001vjv.2_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | E9PLH4Q8WWI1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory tract | 1.77e-23 | 54 |
upper respiratory tract | 4.53e-19 | 19 |
respiratory primordium | 4.91e-19 | 38 |
endoderm of foregut | 4.91e-19 | 38 |
foregut | 3.20e-18 | 87 |
segment of respiratory tract | 6.56e-18 | 47 |
respiratory system | 3.14e-17 | 74 |
subdivision of digestive tract | 4.39e-15 | 118 |
larynx | 1.25e-14 | 9 |
corpus striatum | 4.52e-13 | 4 |
striatum | 4.52e-13 | 4 |
ventral part of telencephalon | 4.52e-13 | 4 |
future corpus striatum | 4.52e-13 | 4 |
digestive system | 5.37e-12 | 145 |
digestive tract | 5.37e-12 | 145 |
primitive gut | 5.37e-12 | 145 |
endoderm-derived structure | 4.51e-11 | 160 |
endoderm | 4.51e-11 | 160 |
presumptive endoderm | 4.51e-11 | 160 |
caudate-putamen | 3.05e-10 | 3 |
dorsal striatum | 3.05e-10 | 3 |
thoracic cavity element | 3.40e-09 | 34 |
thoracic cavity | 3.40e-09 | 34 |
pharynx | 4.99e-09 | 11 |
organ system subdivision | 5.32e-09 | 223 |
thoracic segment organ | 7.29e-09 | 35 |
open tracheal system trachea | 1.20e-07 | 2 |
telencephalic nucleus | 1.84e-07 | 7 |
caudate nucleus | 2.34e-07 | 2 |
future caudate nucleus | 2.34e-07 | 2 |
chordate pharynx | 4.91e-07 | 10 |
pharyngeal region of foregut | 4.91e-07 | 10 |
primordium | 5.37e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.79e-13 | 106 |
cell type cancer | 1.10e-08 | 143 |