FFCP PHASE1:Hg19::chr17:79479822..79479830,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:79479822..79479830,-
|short_description=p1@ACTG1
|description=CAGE_peak_1_at_ACTG1_5end
|association_with_transcript=0bp_to_ENST00000331925,ENST0000044729...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=71 | |EntrezGene=71 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=144 | |HGNC=144 | ||
|TSSclassifier=strong | |||
|UniProt=P63261,F5H0N0 | |UniProt=P63261,F5H0N0 | ||
|association_with_transcript=0bp_to_ENST00000331925,ENST00000447294,uc002kag.2,uc002kal.1_5end | |||
|cluster_id=chr17:79479822..79479830,- | |||
|coexpression_cluster_id=C2443 | |||
|description=CAGE_peak_1_at_ACTG1_5end | |||
|id=chr17:79479822..79479830,- | |||
|ontology_enrichment_celltype=CL:0000548!4.02e-36!679;CL:0000004!4.02e-36!679;CL:0000255!4.02e-36!679;CL:0000012!1.64e-35!682;CL:0000144!1.90e-32!625;CL:0002371!3.46e-30!591;CL:0000055!8.45e-30!180;CL:0000220!1.20e-27!246;CL:0002321!1.89e-27!248;CL:0000222!7.52e-24!119;CL:0000003!3.22e-22!722;CL:0000183!2.65e-16!59;CL:0000680!7.66e-15!57;CL:0000056!7.66e-15!57;CL:0000355!7.66e-15!57;CL:0000393!3.33e-14!60;CL:0000211!3.33e-14!60;CL:0000187!3.55e-14!54;CL:0000192!2.44e-13!42;CL:0000514!2.44e-13!42;CL:0000057!2.60e-12!75;CL:0000066!3.07e-12!254;CL:0000359!7.66e-11!32;CL:0000063!4.63e-10!578;CL:0002078!1.76e-09!44;CL:0000115!5.76e-09!35;CL:1000449!1.45e-08!16;CL:0000213!1.81e-08!57;CL:0000215!1.81e-08!57;CL:0002139!2.25e-08!24;CL:0000071!3.78e-08!18;CL:0002546!3.78e-08!18;CL:0000221!5.08e-07!71;CL:0002681!6.34e-07!13;CL:0002584!6.34e-07!13;CL:1000507!8.74e-07!12;CL:1000494!8.74e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000192;3.86e-10;43!CL:0000359;4.26e-10;32!CL:0000187;9.46e-09;55!CL:0002139;2.25e-08;24!CL:1000449;3.59e-08;15!CL:0000071;3.79e-08;18!CL:0000115;8.33e-08;36!CL:0000393;1.22e-07;61!CL:0000211;1.22e-07;61!CL:0002078;8.85e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.56e-28,250;CL:0000222,1.90e-24,121;CL:0000680,3.09e-15,58;CL:0000056,3.09e-15,58;CL:0000355,3.09e-15,58;CL:0000393,1.37e-14,61;CL:0000211,1.37e-14,61;CL:0000187,1.44e-14,55;CL:0000192,9.75e-14,43;CL:0000514,9.75e-14,43;CL:0000057,1.24e-12,76;CL:0000066,5.71e-12,253;CL:0000359,7.66e-11,32;CL:0002078,1.23e-09,45;CL:0000115,4.08e-09,36;CL:0000213,1.26e-08,58;CL:0000215,1.26e-08,58;CL:0002139,2.25e-08,24;CL:1000449,3.59e-08,15;CL:0000071,3.78e-08,18;CL:0002546,3.78e-08,18;CL:0000221,2.66e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000514;3.86e-10;43!CL:0000355;9.71e-09;58!CL:0002546;3.79e-08;18!CL:0000222;2.92e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!9.40e-21!79;UBERON:0007798!9.40e-21!79;UBERON:0003914!5.65e-16!118;UBERON:0000055!1.30e-15!69;UBERON:0000914!3.94e-15!83;UBERON:0002329!3.94e-15!83;UBERON:0003077!3.94e-15!83;UBERON:0003059!3.94e-15!83;UBERON:0007282!3.94e-15!83;UBERON:0009618!3.94e-15!83;UBERON:0007285!3.94e-15!83;UBERON:0000486!4.07e-15!82;UBERON:0005256!5.12e-15!143;UBERON:0001981!5.70e-15!60;UBERON:0007500!5.70e-15!60;UBERON:0004537!5.70e-15!60;UBERON:0006965!5.70e-15!60;UBERON:0004290!9.71e-14!70;UBERON:0001637!1.00e-13!42;UBERON:0003509!1.00e-13!42;UBERON:0004572!1.00e-13!42;UBERON:0000490!1.40e-13!138;UBERON:0004872!4.06e-13!84;UBERON:0004535!4.78e-13!110;UBERON:0002100!1.60e-12!216;UBERON:0001134!4.08e-12!61;UBERON:0002036!4.08e-12!61;UBERON:0003082!4.08e-12!61;UBERON:0001009!1.51e-11!113;UBERON:0002385!5.24e-11!63;UBERON:0001015!5.24e-11!63;UBERON:0000383!5.24e-11!63;UBERON:0004573!9.22e-10!33;UBERON:0004571!9.22e-10!33;UBERON:0003104!1.18e-09!238;UBERON:0009142!1.18e-09!238;UBERON:0004211!1.45e-08!16;UBERON:0001285!1.45e-08!16;UBERON:0007684!1.45e-08!16;UBERON:0003220!1.45e-08!16;UBERON:0004208!1.45e-08!16;UBERON:0000487!3.66e-08!22;UBERON:0001986!3.78e-08!18;UBERON:0004638!3.78e-08!18;UBERON:0004852!3.78e-08!18;UBERON:0000475!7.64e-08!365;UBERON:0000353!8.54e-08!17;UBERON:0000468!1.24e-07!659;UBERON:0006555!1.46e-07!17;UBERON:0005103!1.46e-07!17;UBERON:0000083!1.46e-07!17;UBERON:0009201!1.46e-07!17;UBERON:0004819!1.46e-07!17;UBERON:0006553!1.46e-07!17;UBERON:0003074!1.46e-07!17;UBERON:0003060!1.46e-07!17;UBERON:0006914!1.67e-07!25;UBERON:0000926!2.64e-07!448;UBERON:0004120!2.64e-07!448;UBERON:0006603!2.64e-07!448;UBERON:0005085!2.85e-07!29;UBERON:0000119!4.94e-07!312;UBERON:0001225!6.34e-07!13;UBERON:0008987!6.34e-07!13;UBERON:0009773!8.74e-07!12;UBERON:0001231!8.74e-07!12;UBERON:0004810!8.74e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;1.10e-10;74!UBERON:0007500;3.67e-10;56!UBERON:0001981;3.67e-10;56!UBERON:0004537;3.67e-10;56!UBERON:0001637;5.13e-10;42!UBERON:0003509;5.13e-10;42!UBERON:0004572;5.13e-10;42!UBERON:0002049;2.48e-09;75!UBERON:0007798;2.48e-09;75!UBERON:0004573;6.93e-09;33!UBERON:0004571;6.93e-09;33!UBERON:0000055;1.54e-08;65!UBERON:0006555;3.59e-08;15!UBERON:0004819;3.59e-08;15!UBERON:0001285;3.59e-08;15!UBERON:0007684;3.59e-08;15!UBERON:0000487;3.67e-08;22!UBERON:0004638;3.79e-08;18!UBERON:0001986;3.79e-08;18!UBERON:0004852;3.79e-08;18!UBERON:0000490;1.13e-07;33!UBERON:0006914;1.68e-07;25!UBERON:0000353;4.72e-07;15!UBERON:0000025;6.03e-07;93 | |||
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| ||
|short_description=p1@ACTG1 | |||
}} | }} |
Latest revision as of 07:31, 18 September 2015
Short description: | p1@ACTG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ACTG1_5end |
Coexpression cluster: | C2443_Mesenchymal_Hepatic_Alveolar_Smooth_Astrocyte_Renal_Hair |
Association with transcript: | 0bp_to_ENST00000331925, ENST00000447294, uc002kag.2, uc002kal.1_5end |
EntrezGene: | ACTG1 |
HGNC: | 144 |
UniProt: | P63261F5H0N0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.56e-28 | 250 |
mesodermal cell | 1.90e-24 | 121 |
muscle precursor cell | 3.09e-15 | 58 |
myoblast | 3.09e-15 | 58 |
multi-potent skeletal muscle stem cell | 3.09e-15 | 58 |
electrically responsive cell | 1.37e-14 | 61 |
electrically active cell | 1.37e-14 | 61 |
muscle cell | 1.44e-14 | 55 |
smooth muscle cell | 9.75e-14 | 43 |
smooth muscle myoblast | 9.75e-14 | 43 |
fibroblast | 1.24e-12 | 76 |
epithelial cell | 5.71e-12 | 253 |
vascular associated smooth muscle cell | 7.66e-11 | 32 |
meso-epithelial cell | 1.23e-09 | 45 |
endothelial cell | 4.08e-09 | 36 |
lining cell | 1.26e-08 | 58 |
barrier cell | 1.26e-08 | 58 |
endothelial cell of vascular tree | 2.25e-08 | 24 |
epithelial cell of nephron | 3.59e-08 | 15 |
blood vessel endothelial cell | 3.78e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.78e-08 | 18 |
ectodermal cell | 2.66e-07 | 72 |