FFCP PHASE1:Hg19::chr17:79827709..79827754,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=396 | |EntrezGene=396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=678 | |HGNC=678 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-201bp_to_uc002kjk.1_5end | |association_with_transcript=-201bp_to_uc002kjk.1_5end | ||
|cluster_id=chr17:79827709..79827754,- | |||
|description=CAGE_peak_11_at_ARHGDIA_5end | |description=CAGE_peak_11_at_ARHGDIA_5end | ||
|id=chr17:79827709..79827754,- | |id=chr17:79827709..79827754,- | ||
|ontology_enrichment_celltype=CL:0000222!5.17e-14!119;CL:0002371!2.76e-11!591;CL:0000144!1.06e-10!625;CL:0000220!1.19e-10!246;CL:0002321!1.64e-10!248;CL:0000548!2.36e-09!679;CL:0000004!2.36e-09!679;CL:0000255!2.36e-09!679;CL:0000183!3.52e-09!59;CL:0000192!4.96e-09!42;CL:0000514!4.96e-09!42;CL:0000012!1.11e-08!682;CL:0000187!2.70e-08!54;CL:0000359!3.43e-08!32;CL:0000055!9.01e-08!180;CL:0000680!9.45e-08!57;CL:0000056!9.45e-08!57;CL:0000355!9.45e-08!57;CL:0000213!1.16e-07!57;CL:0000215!1.16e-07!57;CL:0000393!4.91e-07!60;CL:0000211!4.91e-07!60 | |ontology_enrichment_celltype=CL:0000222!5.17e-14!119;CL:0002371!2.76e-11!591;CL:0000144!1.06e-10!625;CL:0000220!1.19e-10!246;CL:0002321!1.64e-10!248;CL:0000548!2.36e-09!679;CL:0000004!2.36e-09!679;CL:0000255!2.36e-09!679;CL:0000183!3.52e-09!59;CL:0000192!4.96e-09!42;CL:0000514!4.96e-09!42;CL:0000012!1.11e-08!682;CL:0000187!2.70e-08!54;CL:0000359!3.43e-08!32;CL:0000055!9.01e-08!180;CL:0000680!9.45e-08!57;CL:0000056!9.45e-08!57;CL:0000355!9.45e-08!57;CL:0000213!1.16e-07!57;CL:0000215!1.16e-07!57;CL:0000393!4.91e-07!60;CL:0000211!4.91e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000359;7.24e-09;32!CL:0000860;1.93e-08;33!CL:0002057;1.93e-08;33!CL:0000473;2.70e-08;39!CL:0000234;2.70e-08;39!CL:0000192;3.53e-08;43!CL:0000115;3.40e-07;36 | |ontology_enrichment_celltype_v019=CL:0000359;7.24e-09;32!CL:0000860;1.93e-08;33!CL:0002057;1.93e-08;33!CL:0000473;2.70e-08;39!CL:0000234;2.70e-08;39!CL:0000192;3.53e-08;43!CL:0000115;3.40e-07;36 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.67e-14,121;CL:0000192,2.92e-10,43;CL:0000514,2.92e-10,43;CL:0000187,5.07e-09,55;CL:0002321,5.75e-09,250;CL:0000359,5.82e-09,32;CL:0000213,6.02e-08,58;CL:0000215,6.02e-08,58;CL:0000115,6.50e-08,36;CL:0000680,7.75e-08,58;CL:0000056,7.75e-08,58;CL:0000355,7.75e-08,58;CL:0000393,3.10e-07,61;CL:0000211,3.10e-07,61;CL:0000766,4.95e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000514;3.53e-08;43 | |ontology_enrichment_development_v019=CL:0000514;3.53e-08;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.15e-11!216;UBERON:0002204!6.05e-11!167;UBERON:0001637!2.56e-10!42;UBERON:0003509!2.56e-10!42;UBERON:0004572!2.56e-10!42;UBERON:0000926!7.49e-10!448;UBERON:0004120!7.49e-10!448;UBERON:0006603!7.49e-10!448;UBERON:0000055!8.34e-10!69;UBERON:0001981!2.59e-09!60;UBERON:0007500!2.59e-09!60;UBERON:0004537!2.59e-09!60;UBERON:0006965!2.59e-09!60;UBERON:0002049!5.70e-09!79;UBERON:0007798!5.70e-09!79;UBERON:0004872!1.38e-08!84;UBERON:0004290!1.33e-07!70;UBERON:0004573!2.13e-07!33;UBERON:0004571!2.13e-07!33;UBERON:0000486!2.36e-07!82;UBERON:0000914!4.89e-07!83;UBERON:0002329!4.89e-07!83;UBERON:0003077!4.89e-07!83;UBERON:0003059!4.89e-07!83;UBERON:0007282!4.89e-07!83;UBERON:0009618!4.89e-07!83;UBERON:0007285!4.89e-07!83;UBERON:0005256!7.23e-07!143 | |ontology_enrichment_uberon=UBERON:0003081!1.15e-11!216;UBERON:0002204!6.05e-11!167;UBERON:0001637!2.56e-10!42;UBERON:0003509!2.56e-10!42;UBERON:0004572!2.56e-10!42;UBERON:0000926!7.49e-10!448;UBERON:0004120!7.49e-10!448;UBERON:0006603!7.49e-10!448;UBERON:0000055!8.34e-10!69;UBERON:0001981!2.59e-09!60;UBERON:0007500!2.59e-09!60;UBERON:0004537!2.59e-09!60;UBERON:0006965!2.59e-09!60;UBERON:0002049!5.70e-09!79;UBERON:0007798!5.70e-09!79;UBERON:0004872!1.38e-08!84;UBERON:0004290!1.33e-07!70;UBERON:0004573!2.13e-07!33;UBERON:0004571!2.13e-07!33;UBERON:0000486!2.36e-07!82;UBERON:0000914!4.89e-07!83;UBERON:0002329!4.89e-07!83;UBERON:0003077!4.89e-07!83;UBERON:0003059!4.89e-07!83;UBERON:0007282!4.89e-07!83;UBERON:0009618!4.89e-07!83;UBERON:0007285!4.89e-07!83;UBERON:0005256!7.23e-07!143 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.83e-09;42!UBERON:0003509;3.83e-09;42!UBERON:0004572;3.83e-09;42!UBERON:0004573;2.41e-08;33!UBERON:0004571;2.41e-08;33!UBERON:0007500;3.46e-07;56!UBERON:0001981;3.46e-07;56!UBERON:0004537;3.46e-07;56!UBERON:0003914;8.83e-07;74 | |ontology_enrichment_uberon_v019=UBERON:0001637;3.83e-09;42!UBERON:0003509;3.83e-09;42!UBERON:0004572;3.83e-09;42!UBERON:0004573;2.41e-08;33!UBERON:0004571;2.41e-08;33!UBERON:0007500;3.46e-07;56!UBERON:0001981;3.46e-07;56!UBERON:0004537;3.46e-07;56!UBERON:0003914;8.83e-07;74 | ||
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| ||
|short_description=p11@ARHGDIA | |short_description=p11@ARHGDIA | ||
}} | }} |
Latest revision as of 09:10, 18 September 2015
Short description: | p11@ARHGDIA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_ARHGDIA_5end |
Coexpression cluster: | NA |
Association with transcript: | -201bp_to_uc002kjk.1_5end |
EntrezGene: | ARHGDIA |
HGNC: | 678 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.67e-14 | 121 |
smooth muscle cell | 2.92e-10 | 43 |
smooth muscle myoblast | 2.92e-10 | 43 |
muscle cell | 5.07e-09 | 55 |
embryonic cell | 5.75e-09 | 250 |
vascular associated smooth muscle cell | 5.82e-09 | 32 |
lining cell | 6.02e-08 | 58 |
barrier cell | 6.02e-08 | 58 |
endothelial cell | 6.50e-08 | 36 |
muscle precursor cell | 7.75e-08 | 58 |
myoblast | 7.75e-08 | 58 |
multi-potent skeletal muscle stem cell | 7.75e-08 | 58 |
electrically responsive cell | 3.10e-07 | 61 |
electrically active cell | 3.10e-07 | 61 |
myeloid leukocyte | 4.95e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 7.52e-16 | 203 |
mesoderm | 2.06e-15 | 315 |
mesoderm-derived structure | 2.06e-15 | 315 |
presumptive mesoderm | 2.06e-15 | 315 |
artery | 4.02e-12 | 42 |
arterial blood vessel | 4.02e-12 | 42 |
arterial system | 4.02e-12 | 42 |
musculoskeletal system | 2.18e-11 | 167 |
epithelial tube open at both ends | 4.45e-11 | 59 |
blood vessel | 4.45e-11 | 59 |
blood vasculature | 4.45e-11 | 59 |
vascular cord | 4.45e-11 | 59 |
splanchnic layer of lateral plate mesoderm | 8.42e-11 | 83 |
vessel | 1.41e-10 | 68 |
epithelial vesicle | 3.05e-10 | 78 |
vasculature | 3.23e-09 | 78 |
vascular system | 3.23e-09 | 78 |
systemic artery | 1.07e-08 | 33 |
systemic arterial system | 1.07e-08 | 33 |
somite | 5.67e-08 | 71 |
presomitic mesoderm | 5.67e-08 | 71 |
presumptive segmental plate | 5.67e-08 | 71 |
dermomyotome | 5.67e-08 | 71 |
trunk paraxial mesoderm | 5.67e-08 | 71 |
multilaminar epithelium | 1.16e-07 | 83 |
paraxial mesoderm | 1.19e-07 | 72 |
presumptive paraxial mesoderm | 1.19e-07 | 72 |
epithelial tube | 1.23e-07 | 117 |
bone marrow | 1.25e-07 | 76 |
dense mesenchyme tissue | 2.43e-07 | 73 |
immune system | 3.11e-07 | 93 |