FFCP PHASE1:Hg19::chr19:43969782..43969794,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27076 | |EntrezGene=27076 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24880 | |HGNC=24880 | ||
|TSSclassifier=strong | |||
|UniProt=O95274,B2RBR3 | |UniProt=O95274,B2RBR3 | ||
|association_with_transcript=36bp_to_ENST00000244333,NM_014400,uc002owl.1,uc002owm.2_5end | |association_with_transcript=36bp_to_ENST00000244333,NM_014400,uc002owl.1,uc002owm.2_5end | ||
|cluster_id=chr19:43969782..43969794,- | |||
|coexpression_cluster_id=C665 | |||
|description=CAGE_peak_3_at_LYPD3_5end | |description=CAGE_peak_3_at_LYPD3_5end | ||
|id=chr19:43969782..43969794,- | |id=chr19:43969782..43969794,- | ||
|ontology_enrichment_celltype=CL:0000066!5.18e-18!254;CL:0000860!8.58e-14!45;CL:0002076!1.43e-13!43;CL:0002057!4.38e-12!42;CL:0002368!6.01e-10!13;CL:0000223!1.15e-09!59;CL:0002009!1.85e-09!65;CL:0000557!4.03e-09!71;CL:0000766!2.09e-08!76;CL:0002194!2.70e-08!63;CL:0000576!2.70e-08!63;CL:0000040!2.70e-08!63;CL:0000559!2.70e-08!63;CL:0002159!2.81e-08!13;CL:0000839!8.98e-08!70;CL:0002202!2.70e-07!9;CL:0002632!2.70e-07!9 | |ontology_enrichment_celltype=CL:0000066!5.18e-18!254;CL:0000860!8.58e-14!45;CL:0002076!1.43e-13!43;CL:0002057!4.38e-12!42;CL:0002368!6.01e-10!13;CL:0000223!1.15e-09!59;CL:0002009!1.85e-09!65;CL:0000557!4.03e-09!71;CL:0000766!2.09e-08!76;CL:0002194!2.70e-08!63;CL:0000576!2.70e-08!63;CL:0000040!2.70e-08!63;CL:0000559!2.70e-08!63;CL:0002159!2.81e-08!13;CL:0000839!8.98e-08!70;CL:0002202!2.70e-07!9;CL:0002632!2.70e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002159;2.22e-13;14!CL:0000860;4.59e-11;33!CL:0002057;4.59e-11;33!CL:0000244;3.94e-10;4!CL:0000731;3.94e-10;4!CL:0000349;1.11e-09;19!CL:0002577;1.12e-07;3!CL:0002202;1.39e-07;9!CL:0002632;1.39e-07;9!CL:0002076;1.57e-07;42!CL:0000622;2.83e-07;5!CL:0000473;4.70e-07;39!CL:0000234;4.70e-07;39!CL:0002251;4.76e-07;20!CL:0002621;5.84e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,2.04e-13,14;CL:0000860,2.71e-11,42;CL:0002057,2.71e-11,42;CL:0000244,4.69e-10,4;CL:0000731,4.69e-10,4;CL:0002076,7.82e-10,42;CL:0000349,1.01e-09,19;CL:0000066,2.25e-09,253;CL:0000473,2.56e-09,48;CL:0000234,2.56e-09,48;CL:0002009,3.95e-08,61;CL:0002577,1.34e-07,3;CL:0002202,1.78e-07,9;CL:0002632,1.78e-07,9;CL:0000622,2.40e-07,5;CL:0002251,4.21e-07,20;CL:0000557,5.34e-07,67;CL:0002621,6.64e-07,3;CL:0002166,8.17e-07,3;CL:0002328,8.51e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;5.70e-08;42 | |||
|ontology_enrichment_disease=DOID:305!1.27e-13!106;DOID:1749!4.85e-09!14;DOID:0050687!6.45e-08!143 | |ontology_enrichment_disease=DOID:305!1.27e-13!106;DOID:1749!4.85e-09!14;DOID:0050687!6.45e-08!143 | ||
|ontology_enrichment_disease_v019=DOID:5093;4.59e-09;4!DOID:1612;4.59e-09;4!DOID:1749;1.03e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,4.42e-09,4;DOID:1612,4.42e-09,4;DOID:1749,1.04e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!3.00e-17!72;UBERON:0004119!1.38e-16!169;UBERON:0000925!1.38e-16!169;UBERON:0006595!1.38e-16!169;UBERON:0000065!1.81e-13!53;UBERON:0000072!1.43e-12!46;UBERON:0000077!6.58e-12!130;UBERON:0005631!2.84e-11!14;UBERON:0000158!2.84e-11!14;UBERON:0000161!2.53e-10!35;UBERON:0000062!3.16e-10!511;UBERON:0008947!6.74e-10!38;UBERON:0003258!6.74e-10!38;UBERON:0001007!7.93e-10!155;UBERON:0001555!7.93e-10!155;UBERON:0007026!7.93e-10!155;UBERON:0003124!1.51e-08!7;UBERON:0000468!4.73e-08!659;UBERON:0007196!4.95e-08!14;UBERON:0001558!4.95e-08!14;UBERON:0000166!7.60e-08!21;UBERON:0001041!1.06e-07!98;UBERON:0004921!2.03e-07!129;UBERON:0004185!2.03e-07!129;UBERON:0001737!3.94e-07!9;UBERON:0001557!4.44e-07!19;UBERON:0002371!4.70e-07!80;UBERON:0000922!5.26e-07!612;UBERON:0005910!5.57e-07!6;UBERON:0000165!9.68e-07!28;UBERON:0000930!9.68e-07!28 | |ontology_enrichment_uberon=UBERON:0001004!3.00e-17!72;UBERON:0004119!1.38e-16!169;UBERON:0000925!1.38e-16!169;UBERON:0006595!1.38e-16!169;UBERON:0000065!1.81e-13!53;UBERON:0000072!1.43e-12!46;UBERON:0000077!6.58e-12!130;UBERON:0005631!2.84e-11!14;UBERON:0000158!2.84e-11!14;UBERON:0000161!2.53e-10!35;UBERON:0000062!3.16e-10!511;UBERON:0008947!6.74e-10!38;UBERON:0003258!6.74e-10!38;UBERON:0001007!7.93e-10!155;UBERON:0001555!7.93e-10!155;UBERON:0007026!7.93e-10!155;UBERON:0003124!1.51e-08!7;UBERON:0000468!4.73e-08!659;UBERON:0007196!4.95e-08!14;UBERON:0001558!4.95e-08!14;UBERON:0000166!7.60e-08!21;UBERON:0001041!1.06e-07!98;UBERON:0004921!2.03e-07!129;UBERON:0004185!2.03e-07!129;UBERON:0001737!3.94e-07!9;UBERON:0001557!4.44e-07!19;UBERON:0002371!4.70e-07!80;UBERON:0000922!5.26e-07!612;UBERON:0005910!5.57e-07!6;UBERON:0000165!9.68e-07!28;UBERON:0000930!9.68e-07!28 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;8.32e-10;10!UBERON:0000158;8.32e-10;10!UBERON:0001987;1.91e-09;4!UBERON:0000478;9.26e-09;24!UBERON:0000486;1.94e-08;12!UBERON:0000365;4.57e-08;5!UBERON:0000305;1.00e-07;7!UBERON:0007196;1.32e-07;15!UBERON:0001558;1.32e-07;15!UBERON:0003126;2.09e-07;7!UBERON:0001005;2.09e-07;7!UBERON:0005178;3.87e-07;34!UBERON:0002224;3.87e-07;34!UBERON:0000165;5.81e-07;28!UBERON:0001949;5.84e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.52e-17,14;UBERON:0000158,5.52e-17,14;UBERON:0003124,6.19e-11,7;UBERON:0001987,2.23e-09,4;UBERON:0004340,2.23e-09,4;UBERON:0000478,8.51e-09,24;UBERON:0004119,3.98e-08,160;UBERON:0000925,3.98e-08,160;UBERON:0006595,3.98e-08,160;UBERON:0003102,4.44e-08,99;UBERON:0000365,5.23e-08,5;UBERON:0001004,7.17e-08,74;UBERON:0000305,7.80e-08,7;UBERON:0000166,9.19e-08,22;UBERON:0005178,1.13e-07,34;UBERON:0002224,1.13e-07,34;UBERON:0000915,1.20e-07,52;UBERON:0007196,1.46e-07,15;UBERON:0001558,1.46e-07,15;UBERON:0005181,2.28e-07,35;UBERON:0003126,2.84e-07,7;UBERON:0001005,2.84e-07,7;UBERON:0004923,6.62e-07,66;UBERON:0001949,6.64e-07,3;UBERON:0004815,8.51e-07,3;UBERON:0002031,8.51e-07,3;UBERON:0004871,8.59e-07,8;UBERON:0000161,9.07e-07,36 | |||
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| ||
|short_description=p3@LYPD3 | |short_description=p3@LYPD3 | ||
}} | }} |
Latest revision as of 11:01, 18 September 2015
Short description: | p3@LYPD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LYPD3_5end |
Coexpression cluster: | C665_amniotic_esophagus_tongue_Corneal_tonsil_salivary_Urothelial |
Association with transcript: | 36bp_to_ENST00000244333, NM_014400, uc002owl.1, uc002owm.2_5end |
EntrezGene: | LYPD3 |
HGNC: | 24880 |
UniProt: | O95274B2RBR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 2.04e-13 | 14 |
classical monocyte | 2.71e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.71e-11 | 42 |
transitional epithelial cell | 4.69e-10 | 4 |
urothelial cell | 4.69e-10 | 4 |
endo-epithelial cell | 7.82e-10 | 42 |
extraembryonic cell | 1.01e-09 | 19 |
epithelial cell | 2.25e-09 | 253 |
defensive cell | 2.56e-09 | 48 |
phagocyte | 2.56e-09 | 48 |
macrophage dendritic cell progenitor | 3.95e-08 | 61 |
placental epithelial cell | 1.34e-07 | 3 |
epithelial cell of tracheobronchial tree | 1.78e-07 | 9 |
epithelial cell of lower respiratory tract | 1.78e-07 | 9 |
acinar cell | 2.40e-07 | 5 |
epithelial cell of alimentary canal | 4.21e-07 | 20 |
granulocyte monocyte progenitor cell | 5.34e-07 | 67 |
gingival epithelial cell | 6.64e-07 | 3 |
epithelial cell of Malassez | 8.17e-07 | 3 |
bronchial epithelial cell | 8.51e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.52e-17 | 14 |
membranous layer | 5.52e-17 | 14 |
chorion | 6.19e-11 | 7 |
placenta | 2.23e-09 | 4 |
allantois | 2.23e-09 | 4 |
extraembryonic structure | 8.51e-09 | 24 |
endoderm-derived structure | 3.98e-08 | 160 |
endoderm | 3.98e-08 | 160 |
presumptive endoderm | 3.98e-08 | 160 |
surface structure | 4.44e-08 | 99 |
urothelium | 5.23e-08 | 5 |
respiratory system | 7.17e-08 | 74 |
amnion | 7.80e-08 | 7 |
oral opening | 9.19e-08 | 22 |
thoracic cavity element | 1.13e-07 | 34 |
thoracic cavity | 1.13e-07 | 34 |
thoracic segment of trunk | 1.20e-07 | 52 |
tracheobronchial tree | 1.46e-07 | 15 |
lower respiratory tract | 1.46e-07 | 15 |
thoracic segment organ | 2.28e-07 | 35 |
trachea | 2.84e-07 | 7 |
respiratory airway | 2.84e-07 | 7 |
organ component layer | 6.62e-07 | 66 |
gingival epithelium | 6.64e-07 | 3 |
lower respiratory tract epithelium | 8.51e-07 | 3 |
epithelium of bronchus | 8.51e-07 | 3 |
somatic layer of lateral plate mesoderm | 8.59e-07 | 8 |
orifice | 9.07e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 4.42e-09 | 4 |
breast cancer | 4.42e-09 | 4 |
squamous cell carcinoma | 1.04e-07 | 14 |