FFCP PHASE1:Hg19::chr15:64126182..64126193,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8925 | |EntrezGene=8925 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4867 | |HGNC=4867 | ||
|TSSclassifier=strong | |||
|UniProt=E7ENU6,Q15751 | |UniProt=E7ENU6,Q15751 | ||
|association_with_transcript=-35bp_to_ENST00000425434,NM_003922,uc002amp.2,uc010bgt.1,uc010uil.1_5end | |association_with_transcript=-35bp_to_ENST00000425434,NM_003922,uc002amp.2,uc010bgt.1,uc010uil.1_5end | ||
|cluster_id=chr15:64126182..64126193,- | |||
|description=CAGE_peak_2_at_HERC1_5end | |description=CAGE_peak_2_at_HERC1_5end | ||
|id=chr15:64126182..64126193,- | |id=chr15:64126182..64126193,- | ||
|ontology_enrichment_celltype=CL:0000037!7.47e-12!172;CL:0000566!7.47e-12!172;CL:0000738!2.49e-10!140;CL:0002032!6.26e-10!165;CL:0000837!6.26e-10!165;CL:0000988!5.38e-09!182;CL:0002031!6.32e-08!124;CL:0002087!1.53e-07!119 | |ontology_enrichment_celltype=CL:0000037!7.47e-12!172;CL:0000566!7.47e-12!172;CL:0000738!2.49e-10!140;CL:0002032!6.26e-10!165;CL:0000837!6.26e-10!165;CL:0000988!5.38e-09!182;CL:0002031!6.32e-08!124;CL:0002087!1.53e-07!119 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,6.08e-12,168;CL:0000738,7.76e-11,136;CL:0002032,5.66e-10,161;CL:0000837,5.66e-10,161;CL:0000988,2.09e-09,177;CL:0002031,3.11e-08,120;CL:0002087,8.21e-08,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.87e-32!115;UBERON:0001049!7.10e-17!57;UBERON:0005068!7.10e-17!57;UBERON:0006241!7.10e-17!57;UBERON:0007135!7.10e-17!57;UBERON:0001017!2.10e-15!82;UBERON:0002616!5.06e-15!59;UBERON:0000955!1.31e-14!69;UBERON:0006238!1.31e-14!69;UBERON:0003080!1.99e-14!42;UBERON:0005743!3.40e-14!86;UBERON:0002780!4.15e-14!41;UBERON:0001890!4.15e-14!41;UBERON:0006240!4.15e-14!41;UBERON:0000073!2.26e-13!94;UBERON:0001016!2.26e-13!94;UBERON:0001893!1.44e-11!34;UBERON:0002020!1.85e-11!34;UBERON:0003528!1.85e-11!34;UBERON:0002791!4.63e-11!33;UBERON:0001869!6.93e-11!32;UBERON:0002346!1.27e-09!90;UBERON:0003075!1.39e-09!86;UBERON:0007284!1.39e-09!86;UBERON:0002619!6.58e-09!22;UBERON:0000956!1.68e-08!25;UBERON:0000203!1.68e-08!25;UBERON:0001950!1.99e-08!20;UBERON:0003056!4.67e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.82e-10;41!UBERON:0001890;2.82e-10;41!UBERON:0003528;8.30e-10;34!UBERON:0002020;8.30e-10;34!UBERON:0001893;9.27e-10;34!UBERON:0000073;9.69e-10;53!UBERON:0002616;9.69e-10;53!UBERON:0001869;1.40e-09;32!UBERON:0002791;2.17e-09;32!UBERON:0007023;4.43e-09;114!UBERON:0002619;3.40e-08;22!UBERON:0000956;3.71e-08;25!UBERON:0000203;3.71e-08;25!UBERON:0001950;1.03e-07;20!UBERON:0001017;6.21e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.72e-32,114;UBERON:0001049,4.65e-17,56;UBERON:0005068,4.65e-17,56;UBERON:0006241,4.65e-17,56;UBERON:0007135,4.65e-17,56;UBERON:0000073,4.79e-16,53;UBERON:0002616,4.79e-16,53;UBERON:0001017,2.95e-15,81;UBERON:0000955,1.45e-14,68;UBERON:0006238,1.45e-14,68;UBERON:0002780,1.94e-14,41;UBERON:0001890,1.94e-14,41;UBERON:0003080,1.94e-14,41;UBERON:0006240,1.94e-14,41;UBERON:0001016,4.66e-14,89;UBERON:0001893,7.84e-12,34;UBERON:0003528,1.01e-11,34;UBERON:0002020,1.01e-11,34;UBERON:0001869,3.93e-11,32;UBERON:0002791,7.27e-11,32;UBERON:0002346,1.16e-09,86;UBERON:0003075,1.25e-09,82;UBERON:0007284,1.25e-09,82;UBERON:0002619,4.21e-09,22;UBERON:0000956,1.10e-08,25;UBERON:0000203,1.10e-08,25;UBERON:0001950,1.31e-08,20;UBERON:0003056,1.45e-07,61 | |||
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| ||
|short_description=p2@HERC1 | |short_description=p2@HERC1 | ||
}} | }} |
Latest revision as of 12:59, 18 September 2015
Short description: | p2@HERC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HERC1_5end |
Coexpression cluster: | NA |
Association with transcript: | -35bp_to_ENST00000425434, NM_003922, uc002amp.2, uc010bgt.1, uc010uil.1_5end |
EntrezGene: | HERC1 |
HGNC: | 4867 |
UniProt: | E7ENU6Q15751 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 6.08e-12 | 168 |
leukocyte | 7.76e-11 | 136 |
hematopoietic oligopotent progenitor cell | 5.66e-10 | 161 |
hematopoietic multipotent progenitor cell | 5.66e-10 | 161 |
hematopoietic cell | 2.09e-09 | 177 |
hematopoietic lineage restricted progenitor cell | 3.11e-08 | 120 |
nongranular leukocyte | 8.21e-08 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.72e-32 | 114 |
neural tube | 4.65e-17 | 56 |
neural rod | 4.65e-17 | 56 |
future spinal cord | 4.65e-17 | 56 |
neural keel | 4.65e-17 | 56 |
regional part of nervous system | 4.79e-16 | 53 |
regional part of brain | 4.79e-16 | 53 |
central nervous system | 2.95e-15 | 81 |
brain | 1.45e-14 | 68 |
future brain | 1.45e-14 | 68 |
regional part of forebrain | 1.94e-14 | 41 |
forebrain | 1.94e-14 | 41 |
anterior neural tube | 1.94e-14 | 41 |
future forebrain | 1.94e-14 | 41 |
nervous system | 4.66e-14 | 89 |
telencephalon | 7.84e-12 | 34 |
brain grey matter | 1.01e-11 | 34 |
gray matter | 1.01e-11 | 34 |
cerebral hemisphere | 3.93e-11 | 32 |
regional part of telencephalon | 7.27e-11 | 32 |
neurectoderm | 1.16e-09 | 86 |
neural plate | 1.25e-09 | 82 |
presumptive neural plate | 1.25e-09 | 82 |
regional part of cerebral cortex | 4.21e-09 | 22 |
cerebral cortex | 1.10e-08 | 25 |
pallium | 1.10e-08 | 25 |
neocortex | 1.31e-08 | 20 |
pre-chordal neural plate | 1.45e-07 | 61 |