FFCP PHASE1:Hg19::chr8:61591290..61591312,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:61591290..61591312,+
|short_description=p1@CHD7
|description=CAGE_peak_1_at_CHD7_5end
|association_with_transcript=-11bp_to_NM_017780_5end
|EntrezGene=556...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55636 | |EntrezGene=55636 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20626 | |HGNC=20626 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZWF9,Q9P2D1 | |UniProt=Q6ZWF9,Q9P2D1 | ||
|association_with_transcript=-11bp_to_NM_017780_5end | |||
|cluster_id=chr8:61591290..61591312,+ | |||
|description=CAGE_peak_1_at_CHD7_5end | |||
|id=chr8:61591290..61591312,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.35e-15!172;CL:0000566!4.35e-15!172;CL:0002032!5.26e-15!165;CL:0000837!5.26e-15!165;CL:0000838!8.70e-15!52;CL:0000542!9.21e-15!53;CL:0000051!9.21e-15!53;CL:0000988!7.93e-14!182;CL:0000738!9.36e-13!140;CL:0000945!1.99e-09!24;CL:0000826!1.99e-09!24;CL:0002031!2.04e-08!124;CL:0000236!9.29e-08!14;CL:0002087!1.71e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.44e-09;24!CL:0000542;1.94e-09;53!CL:0000236;6.25e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,5.00e-15,52;CL:0000542,5.22e-15,53;CL:0000051,5.22e-15,53;CL:0002032,2.20e-13,161;CL:0000837,2.20e-13,161;CL:0000037,2.42e-13,168;CL:0000988,3.16e-12,177;CL:0000738,1.09e-10,136;CL:0000945,1.26e-09,24;CL:0000826,1.26e-09,24;CL:0000236,3.01e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000051;1.94e-09;53 | |||
|ontology_enrichment_disease=DOID:305!7.84e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,8.92e-07,51;DOID:0060083,8.92e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.31e-16!115;UBERON:0001049!1.41e-10!57;UBERON:0005068!1.41e-10!57;UBERON:0006241!1.41e-10!57;UBERON:0007135!1.41e-10!57;UBERON:0002616!4.93e-08!59;UBERON:0001017!6.70e-08!82;UBERON:0002780!1.18e-07!41;UBERON:0001890!1.18e-07!41;UBERON:0006240!1.18e-07!41;UBERON:0003075!1.36e-07!86;UBERON:0007284!1.36e-07!86;UBERON:0003080!2.32e-07!42;UBERON:0005743!2.36e-07!86;UBERON:0000073!8.48e-07!94;UBERON:0001016!8.48e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.03e-16,114;UBERON:0001049,5.37e-11,56;UBERON:0005068,5.37e-11,56;UBERON:0006241,5.37e-11,56;UBERON:0007135,5.37e-11,56;UBERON:0000073,6.12e-10,53;UBERON:0002616,6.12e-10,53;UBERON:0002780,4.50e-08,41;UBERON:0001890,4.50e-08,41;UBERON:0003080,4.50e-08,41;UBERON:0006240,4.50e-08,41;UBERON:0001017,1.20e-07,81;UBERON:0003075,3.98e-07,82;UBERON:0007284,3.98e-07,82;UBERON:0001016,5.45e-07,89 | |||
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| ||
|short_description=p1@CHD7 | |||
}} | }} |
Latest revision as of 16:45, 18 September 2015
Short description: | p1@CHD7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CHD7_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_NM_017780_5end |
EntrezGene: | CHD7 |
HGNC: | 20626 |
UniProt: | Q6ZWF9Q9P2D1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 5.00e-15 | 52 |
lymphocyte | 5.22e-15 | 53 |
common lymphoid progenitor | 5.22e-15 | 53 |
hematopoietic oligopotent progenitor cell | 2.20e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.20e-13 | 161 |
hematopoietic stem cell | 2.42e-13 | 168 |
hematopoietic cell | 3.16e-12 | 177 |
leukocyte | 1.09e-10 | 136 |
lymphocyte of B lineage | 1.26e-09 | 24 |
pro-B cell | 1.26e-09 | 24 |
B cell | 3.01e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.03e-16 | 114 |
neural tube | 5.37e-11 | 56 |
neural rod | 5.37e-11 | 56 |
future spinal cord | 5.37e-11 | 56 |
neural keel | 5.37e-11 | 56 |
regional part of nervous system | 6.12e-10 | 53 |
regional part of brain | 6.12e-10 | 53 |
regional part of forebrain | 4.50e-08 | 41 |
forebrain | 4.50e-08 | 41 |
anterior neural tube | 4.50e-08 | 41 |
future forebrain | 4.50e-08 | 41 |
central nervous system | 1.20e-07 | 81 |
neural plate | 3.98e-07 | 82 |
presumptive neural plate | 3.98e-07 | 82 |
nervous system | 5.45e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 8.92e-07 | 51 |
immune system cancer | 8.92e-07 | 51 |