FFCP PHASE1:Hg19::chr11:62621427..62621442,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9297 | |EntrezGene=9297 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=10151 | |HGNC=10151 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000383926,NR_002559,uc001nvx.2_5end | |association_with_transcript=0bp_to_ENST00000383926,NR_002559,uc001nvx.2_5end | ||
|cluster_id=chr11:62621427..62621442,- | |||
|coexpression_cluster_id=C3174 | |||
|description=CAGE_peak_1_at_SNORD29_5end | |description=CAGE_peak_1_at_SNORD29_5end | ||
|id=chr11:62621427..62621442,- | |id=chr11:62621427..62621442,- | ||
|ontology_enrichment_celltype=CL:0000988!1.85e-08!182;CL:0000037!3.16e-08!172;CL:0000566!3.16e-08!172;CL:0002032!5.19e-08!165;CL:0000837!5.19e-08!165;CL:0000738!4.59e-07!140 | |ontology_enrichment_celltype=CL:0000988!1.85e-08!182;CL:0000037!3.16e-08!172;CL:0000566!3.16e-08!172;CL:0002032!5.19e-08!165;CL:0000837!5.19e-08!165;CL:0000738!4.59e-07!140 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,4.85e-09,177;CL:0000037,1.69e-08,168;CL:0002032,7.57e-08,161;CL:0000837,7.57e-08,161;CL:0000738,1.99e-07,136 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.35e-08!57;UBERON:0005068!1.35e-08!57;UBERON:0006241!1.35e-08!57;UBERON:0007135!1.35e-08!57;UBERON:0001017!1.59e-07!82;UBERON:0002780!3.14e-07!41;UBERON:0001890!3.14e-07!41;UBERON:0006240!3.14e-07!41;UBERON:0003080!3.55e-07!42;UBERON:0000955!8.31e-07!69;UBERON:0006238!8.31e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.40e-08;41!UBERON:0001890;9.40e-08;41!UBERON:0002791;1.36e-07;32!UBERON:0003528;1.50e-07;34!UBERON:0002020;1.50e-07;34!UBERON:0002619;2.05e-07;22!UBERON:0000073;6.37e-07;53!UBERON:0002616;6.37e-07;53!UBERON:0001869;9.70e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,8.50e-13,56;UBERON:0005068,8.50e-13,56;UBERON:0006241,8.50e-13,56;UBERON:0007135,8.50e-13,56;UBERON:0000073,1.91e-11,53;UBERON:0002616,1.91e-11,53;UBERON:0002780,2.67e-10,41;UBERON:0001890,2.67e-10,41;UBERON:0003080,2.67e-10,41;UBERON:0006240,2.67e-10,41;UBERON:0001017,1.48e-09,81;UBERON:0000955,3.83e-09,68;UBERON:0006238,3.83e-09,68;UBERON:0003528,4.23e-09,34;UBERON:0002020,4.23e-09,34;UBERON:0002346,4.24e-09,86;UBERON:0001016,5.24e-09,89;UBERON:0002791,2.80e-08,32;UBERON:0003075,1.14e-07,82;UBERON:0007284,1.14e-07,82;UBERON:0002619,1.79e-07,22;UBERON:0001893,2.43e-07,34;UBERON:0001869,3.03e-07,32 | |||
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| ||
|short_description=p1@SNORD29 | |short_description=p1@SNORD29 | ||
}} | }} |
Latest revision as of 21:52, 18 September 2015
Short description: | p1@SNORD29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNORD29_5end |
Coexpression cluster: | C3174_Mesenchymal_acute_Neutrophils_neuroectodermal_cerebellum_CD4_cord |
Association with transcript: | 0bp_to_ENST00000383926, NR_002559, uc001nvx.2_5end |
EntrezGene: | SNORD29 |
HGNC: | 10151 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 4.85e-09 | 177 |
hematopoietic stem cell | 1.69e-08 | 168 |
hematopoietic oligopotent progenitor cell | 7.57e-08 | 161 |
hematopoietic multipotent progenitor cell | 7.57e-08 | 161 |
leukocyte | 1.99e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
neural tube | 8.50e-13 | 56 |
neural rod | 8.50e-13 | 56 |
future spinal cord | 8.50e-13 | 56 |
neural keel | 8.50e-13 | 56 |
regional part of nervous system | 1.91e-11 | 53 |
regional part of brain | 1.91e-11 | 53 |
regional part of forebrain | 2.67e-10 | 41 |
forebrain | 2.67e-10 | 41 |
anterior neural tube | 2.67e-10 | 41 |
future forebrain | 2.67e-10 | 41 |
central nervous system | 1.48e-09 | 81 |
brain | 3.83e-09 | 68 |
future brain | 3.83e-09 | 68 |
brain grey matter | 4.23e-09 | 34 |
gray matter | 4.23e-09 | 34 |
neurectoderm | 4.24e-09 | 86 |
nervous system | 5.24e-09 | 89 |
regional part of telencephalon | 2.80e-08 | 32 |
neural plate | 1.14e-07 | 82 |
presumptive neural plate | 1.14e-07 | 82 |
regional part of cerebral cortex | 1.79e-07 | 22 |
telencephalon | 2.43e-07 | 34 |
cerebral hemisphere | 3.03e-07 | 32 |