FFCP PHASE1:Hg19::chr21:47406543..47406568,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1291 | |EntrezGene=1291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |HGNC=2211 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-454bp_to_ENST00000492851_5end | |association_with_transcript=-454bp_to_ENST00000492851_5end | ||
|cluster_id=chr21:47406543..47406568,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_5_at_COL6A1_5end | |description=CAGE_peak_5_at_COL6A1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.52e-42!180;CL:0000057!3.38e-24!75;CL:0000183!1.68e-18!59;CL:0000680!6.94e-18!57;CL:0000056!6.94e-18!57;CL:0000355!6.94e-18!57;CL:0000187!1.90e-17!54;CL:0000393!3.41e-16!60;CL:0000211!3.41e-16!60;CL:0000192!9.12e-14!42;CL:0000514!9.12e-14!42;CL:0000359!4.44e-10!32;CL:0002620!8.48e-10!23;CL:0000048!4.89e-08!430;CL:0000499!8.93e-08!27;CL:0000723!2.36e-07!436;CL:0000034!2.49e-07!444 | |ontology_enrichment_celltype=CL:0000055!2.52e-42!180;CL:0000057!3.38e-24!75;CL:0000183!1.68e-18!59;CL:0000680!6.94e-18!57;CL:0000056!6.94e-18!57;CL:0000355!6.94e-18!57;CL:0000187!1.90e-17!54;CL:0000393!3.41e-16!60;CL:0000211!3.41e-16!60;CL:0000192!9.12e-14!42;CL:0000514!9.12e-14!42;CL:0000359!4.44e-10!32;CL:0002620!8.48e-10!23;CL:0000048!4.89e-08!430;CL:0000499!8.93e-08!27;CL:0000723!2.36e-07!436;CL:0000034!2.49e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0000057;8.96e-13;73!CL:0002620;9.43e-13;23!CL:0000723;2.21e-11;61!CL:0000192;4.47e-11;43!CL:0000134;9.44e-11;55!CL:0000187;1.74e-10;55!CL:0002320;3.39e-10;188!CL:0000048;7.16e-10;58!CL:0000359;2.06e-09;32!CL:0000393;4.97e-09;61!CL:0000211;4.97e-09;61!CL:0002570;6.27e-08;8!CL:0002334;7.46e-08;12!CL:0000034;3.37e-07;69!CL:0000188;3.70e-07;9!CL:0002494;6.78e-07;16 | |ontology_enrichment_celltype_v019=CL:0000057;8.96e-13;73!CL:0002620;9.43e-13;23!CL:0000723;2.21e-11;61!CL:0000192;4.47e-11;43!CL:0000134;9.44e-11;55!CL:0000187;1.74e-10;55!CL:0002320;3.39e-10;188!CL:0000048;7.16e-10;58!CL:0000359;2.06e-09;32!CL:0000393;4.97e-09;61!CL:0000211;4.97e-09;61!CL:0002570;6.27e-08;8!CL:0002334;7.46e-08;12!CL:0000034;3.37e-07;69!CL:0000188;3.70e-07;9!CL:0002494;6.78e-07;16 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.34e-32,76;CL:0000048,9.60e-22,427;CL:0000723,1.01e-20,433;CL:0000680,1.19e-19,58;CL:0000056,1.19e-19,58;CL:0000355,1.19e-19,58;CL:0000187,2.04e-19,55;CL:0000034,2.09e-19,441;CL:0000393,8.00e-17,61;CL:0000211,8.00e-17,61;CL:0000192,9.39e-15,43;CL:0000514,9.39e-15,43;CL:0002620,1.26e-12,23;CL:0002320,3.35e-11,361;CL:0000359,1.45e-09,32;CL:0000134,6.82e-09,354;CL:0002570,5.09e-08,8;CL:0002334,7.34e-08,12;CL:0000188,2.67e-07,9;CL:0000219,5.39e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;4.47e-11;43!CL:0000355;3.96e-10;58 | |ontology_enrichment_development_v019=CL:0000514;4.47e-11;43!CL:0000355;3.96e-10;58 | ||
|ontology_enrichment_disease=DOID:2394!6.61e-07!14 | |ontology_enrichment_disease=DOID:2394!6.61e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.91e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;1.91e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,1.56e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.02e-22!83;UBERON:0002329!1.02e-22!83;UBERON:0003077!1.02e-22!83;UBERON:0003059!1.02e-22!83;UBERON:0007282!1.02e-22!83;UBERON:0009618!1.02e-22!83;UBERON:0007285!1.02e-22!83;UBERON:0004290!5.10e-21!70;UBERON:0000486!9.22e-18!82;UBERON:0002385!2.51e-17!63;UBERON:0001015!2.51e-17!63;UBERON:0000383!2.51e-17!63;UBERON:0001134!7.64e-17!61;UBERON:0002036!7.64e-17!61;UBERON:0003082!7.64e-17!61;UBERON:0005256!4.12e-16!143;UBERON:0000475!1.09e-12!365;UBERON:0003102!1.61e-12!95;UBERON:0002100!2.94e-11!216;UBERON:0000481!3.62e-11!347;UBERON:0002199!1.92e-09!45;UBERON:0002416!1.92e-09!45;UBERON:0003104!7.03e-09!238;UBERON:0009142!7.03e-09!238;UBERON:0000468!2.18e-08!659;UBERON:0002097!4.51e-08!40;UBERON:0004872!8.01e-07!84 | |ontology_enrichment_uberon=UBERON:0000914!1.02e-22!83;UBERON:0002329!1.02e-22!83;UBERON:0003077!1.02e-22!83;UBERON:0003059!1.02e-22!83;UBERON:0007282!1.02e-22!83;UBERON:0009618!1.02e-22!83;UBERON:0007285!1.02e-22!83;UBERON:0004290!5.10e-21!70;UBERON:0000486!9.22e-18!82;UBERON:0002385!2.51e-17!63;UBERON:0001015!2.51e-17!63;UBERON:0000383!2.51e-17!63;UBERON:0001134!7.64e-17!61;UBERON:0002036!7.64e-17!61;UBERON:0003082!7.64e-17!61;UBERON:0005256!4.12e-16!143;UBERON:0000475!1.09e-12!365;UBERON:0003102!1.61e-12!95;UBERON:0002100!2.94e-11!216;UBERON:0000481!3.62e-11!347;UBERON:0002199!1.92e-09!45;UBERON:0002416!1.92e-09!45;UBERON:0003104!7.03e-09!238;UBERON:0009142!7.03e-09!238;UBERON:0000468!2.18e-08!659;UBERON:0002097!4.51e-08!40;UBERON:0004872!8.01e-07!84 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.87e-10;198!UBERON:0002385;2.43e-09;31!UBERON:0001015;2.43e-09;31!UBERON:0000383;2.43e-09;31!UBERON:0002199;4.13e-09;46!UBERON:0002416;4.13e-09;46!UBERON:0002097;1.83e-08;41!UBERON:0003102;3.45e-08;50!UBERON:0004573;5.02e-08;33!UBERON:0004571;5.02e-08;33!UBERON:0001013;5.68e-08;14!UBERON:0002204;2.20e-07;70!UBERON:0002067;2.77e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0002384;1.87e-10;198!UBERON:0002385;2.43e-09;31!UBERON:0001015;2.43e-09;31!UBERON:0000383;2.43e-09;31!UBERON:0002199;4.13e-09;46!UBERON:0002416;4.13e-09;46!UBERON:0002097;1.83e-08;41!UBERON:0003102;3.45e-08;50!UBERON:0004573;5.02e-08;33!UBERON:0004571;5.02e-08;33!UBERON:0001013;5.68e-08;14!UBERON:0002204;2.20e-07;70!UBERON:0002067;2.77e-07;9 | ||
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| ||
|short_description=p5@COL6A1 | |short_description=p5@COL6A1 | ||
}} | }} |
Latest revision as of 22:00, 18 September 2015
Short description: | p5@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -454bp_to_ENST00000492851_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.34e-32 | 76 |
multi fate stem cell | 9.60e-22 | 427 |
somatic stem cell | 1.01e-20 | 433 |
muscle precursor cell | 1.19e-19 | 58 |
myoblast | 1.19e-19 | 58 |
multi-potent skeletal muscle stem cell | 1.19e-19 | 58 |
muscle cell | 2.04e-19 | 55 |
stem cell | 2.09e-19 | 441 |
electrically responsive cell | 8.00e-17 | 61 |
electrically active cell | 8.00e-17 | 61 |
smooth muscle cell | 9.39e-15 | 43 |
smooth muscle myoblast | 9.39e-15 | 43 |
skin fibroblast | 1.26e-12 | 23 |
connective tissue cell | 3.35e-11 | 361 |
vascular associated smooth muscle cell | 1.45e-09 | 32 |
mesenchymal cell | 6.82e-09 | 354 |
mesenchymal stem cell of adipose | 5.09e-08 | 8 |
preadipocyte | 7.34e-08 | 12 |
cell of skeletal muscle | 2.67e-07 | 9 |
motile cell | 5.39e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.56e-07 | 14 |