FFCP PHASE1:Hg19::chr21:47422241..47422263,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1291 | |EntrezGene=1291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |HGNC=2211 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-139bp_to_ENST00000486023,uc002zhw.1_5end | |association_with_transcript=-139bp_to_ENST00000486023,uc002zhw.1_5end | ||
|cluster_id=chr21:47422241..47422263,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_7_at_COL6A1_5end | |description=CAGE_peak_7_at_COL6A1_5end | ||
|id=chr21:47422241..47422263,+ | |id=chr21:47422241..47422263,+ | ||
|ontology_enrichment_celltype=CL:0000055!8.63e-42!180;CL:0000057!1.10e-28!75;CL:0000680!4.56e-13!57;CL:0000056!4.56e-13!57;CL:0000355!4.56e-13!57;CL:0000183!6.88e-13!59;CL:0000187!8.61e-13!54;CL:0000393!2.34e-12!60;CL:0000211!2.34e-12!60;CL:0002620!5.01e-11!23;CL:0000192!4.40e-10!42;CL:0000514!4.40e-10!42;CL:0000048!2.13e-09!430;CL:0000723!1.54e-08!436;CL:0000034!1.79e-08!444;CL:0000499!2.48e-08!27;CL:0000359!8.10e-07!32 | |ontology_enrichment_celltype=CL:0000055!8.63e-42!180;CL:0000057!1.10e-28!75;CL:0000680!4.56e-13!57;CL:0000056!4.56e-13!57;CL:0000355!4.56e-13!57;CL:0000183!6.88e-13!59;CL:0000187!8.61e-13!54;CL:0000393!2.34e-12!60;CL:0000211!2.34e-12!60;CL:0002620!5.01e-11!23;CL:0000192!4.40e-10!42;CL:0000514!4.40e-10!42;CL:0000048!2.13e-09!430;CL:0000723!1.54e-08!436;CL:0000034!1.79e-08!444;CL:0000499!2.48e-08!27;CL:0000359!8.10e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002620;8.88e-12;23!CL:0000057;2.44e-11;73!CL:0002334;3.26e-10;12!CL:0000499;6.42e-10;28!CL:0000723;2.96e-09;61!CL:0002320;5.16e-09;188!CL:0000134;1.87e-08;55!CL:0000048;3.81e-08;58!CL:0002570;9.29e-08;8!CL:0000034;2.10e-07;69!CL:0000327;3.04e-07;15!CL:0000187;6.97e-07;55!CL:0000192;9.84e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.44e-30,76;CL:0000048,6.07e-21,427;CL:0000723,4.31e-20,433;CL:0000034,5.35e-19,441;CL:0002320,6.28e-14,361;CL:0002620,4.15e-12,23;CL:0000680,5.43e-12,58;CL:0000056,5.43e-12,58;CL:0000355,5.43e-12,58;CL:0000187,2.89e-11,55;CL:0000134,5.06e-11,354;CL:0002334,3.42e-10,12;CL:0000499,4.41e-10,28;CL:0000393,5.22e-10,61;CL:0000211,5.22e-10,61;CL:0000219,3.46e-09,386;CL:0000192,9.09e-09,43;CL:0000514,9.09e-09,43;CL:0002570,8.22e-08,8;CL:0000327,2.17e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000355;5.17e-07;58!CL:0000514;9.84e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;6.62e-07;5!DOID:450;6.62e-07;5!DOID:66;6.62e-07;5!DOID:423;6.62e-07;5!DOID:0080000;6.62e-07;5!DOID:11722;6.62e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.95e-07,5;DOID:450,3.95e-07,5;DOID:66,3.95e-07,5;DOID:423,3.95e-07,5;DOID:0080000,3.95e-07,5;DOID:11722,3.95e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.07e-17!83;UBERON:0002329!2.07e-17!83;UBERON:0003077!2.07e-17!83;UBERON:0003059!2.07e-17!83;UBERON:0007282!2.07e-17!83;UBERON:0009618!2.07e-17!83;UBERON:0007285!2.07e-17!83;UBERON:0004290!7.82e-17!70;UBERON:0002385!1.92e-13!63;UBERON:0001015!1.92e-13!63;UBERON:0000383!1.92e-13!63;UBERON:0000486!2.92e-13!82;UBERON:0005256!4.08e-13!143;UBERON:0001134!4.56e-13!61;UBERON:0002036!4.56e-13!61;UBERON:0003082!4.56e-13!61;UBERON:0000475!4.50e-12!365;UBERON:0003102!7.59e-12!95;UBERON:0002199!3.51e-10!45;UBERON:0002416!3.51e-10!45;UBERON:0002100!6.79e-10!216;UBERON:0002097!1.26e-08!40;UBERON:0000481!1.72e-08!347;UBERON:0003104!7.82e-07!238;UBERON:0009142!7.82e-07!238;UBERON:0001135!8.31e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;3.82e-10;31!UBERON:0001015;3.82e-10;31!UBERON:0000383;3.82e-10;31!UBERON:0002199;8.65e-10;46!UBERON:0002416;8.65e-10;46!UBERON:0002097;2.08e-09;41!UBERON:0002384;2.37e-09;198!UBERON:0003102;8.60e-09;50!UBERON:0001135;9.03e-08;15!UBERON:0001013;2.10e-07;14!UBERON:0002204;8.80e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.55e-15,73;UBERON:0002329,5.87e-15,71;UBERON:0003059,5.87e-15,71;UBERON:0007282,5.87e-15,71;UBERON:0004290,5.87e-15,71;UBERON:0009618,5.87e-15,71;UBERON:0002199,5.95e-15,46;UBERON:0002416,5.95e-15,46;UBERON:0003077,1.40e-14,72;UBERON:0007285,1.40e-14,72;UBERON:0002384,3.18e-13,371;UBERON:0003102,4.21e-13,99;UBERON:0000486,1.32e-12,83;UBERON:0007503,1.58e-12,78;UBERON:0002097,3.13e-12,41;UBERON:0005256,1.34e-11,122;UBERON:0002385,1.82e-11,64;UBERON:0001015,1.82e-11,64;UBERON:0000383,1.82e-11,64;UBERON:0003104,1.99e-11,160;UBERON:0009142,1.99e-11,160;UBERON:0001134,2.25e-11,62;UBERON:0002036,2.25e-11,62;UBERON:0003082,2.25e-11,62;UBERON:0001013,1.60e-07,14;UBERON:0001135,1.61e-07,15 | |||
|phase1_expression=0.908391896352783,7.27941781229343,2.67813367782345,2.00146596706261,2.68176656656373,2.61701557230111,0,1.89515962028049,3.13422753839806,0,0,0,0,3.58922423584135,2.31978163009541,6.72325146451775,3.01347264011988,5.11217063271161,2.92759679274304,0.984968464614303,1.83600622119828,1.88072832886853,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0.722878304769133,3.50936537445123,4.49024208778554,1.5905718941022,5.35298357332899,0.283604451492204,0,0.351339142772504,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.13967460498122,1.58891016975863,8.3182620017156,0.709336764396714,1.68203280042692,2.1349799145941,0.74000264525148,0.933633106199299,0.942974704487816,0.980771418680752,3.63257826347835,1.72852777344,0.937285727335186,2.80944069147288,1.1409436430889,2.98897361103602,1.40921398372518,0.809364721840658,0.561803226808994,1.83738754129404,1.96534907698829,3.71972812232756,1.18800285728205,5.68713937340681,3.64064544775211,5.03032699271367,1.0100166837244,1.00094815897571,0,1.31693286264251,2.45190236639216,0.901428353439581,0.226864366320042,2.87023417102179,5.33893472046419,6.56988893594642,5.70173082560364,2.78241828943785,4.63752972082133,1.8611685633159,2.70042131586026,1.55899208257918,1.26216887122057,1.93304787148829,5.65761198865842,3.90510551768276,1.20902517873168,0.847802961552438,0,0,0,0.365921118388786,0.265059536642971,0.69716365721711,0.310983165046111,0,0.36497735907583,6.25798129319264,18.6539872075937,1.38134921352481,2.3218396401599,4.33127689001751,0,0,0,0,0,0,0.134831308160164,0,0,0,1.40241773803446,6.173610169971,5.88034845542168,0,0.982827216677626,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0.977424915930974,6.23960871167747,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0.126995788584338,0,0,1.71072446022705,0.616964956219941,0,0,1.23344192779897,0,1.68678057388185,0.258543431515556,3.57656445851882,2.535908257668,1.06375246633948,0,0,1.41849132023278,0.266422179016099,4.00338382242813,4.88359444852299,0,0.65147236858747,2.48774364119782,0.791951872933429,0.301439377059586,0,0.299918973546171,0,0,0,2.63587341040741,2.29723871668228,0,1.59259437334337,2.26023954805422,0,0,0,0,0,0,0,0,0,1.27587750330633,0,0,0,2.57652132610194,2.00068208423871,3.25518028439683,2.49565033836969,5.17444067511769,1.73472656537328,1.17141414992713,0.601892199455438,2.27407504055985,2.0694614258501,1.99267679560631,1.10621501125022,3.0409265063829,3.32861967686659,4.46086450954113,0,0,0,0,0,0,2.23297027036899,1.07423381301644,3.64858122762996,1.53766979106841,3.58195074346692,1.93024705372329,0,7.71048469013278,5.32685175939381,1.56041596426237,8.30807086693794,3.60252173225874,0.241718899183244,0,0.0920809889358963,1.83703117063371,6.19109971222838,4.72047893853927,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0.895499018888713,0,0,0,0.328014645699706,0.325378394664303,0.103041011647722,0.27470839445503,0.165018999841176,1.14853107599234,0,1.6068392984416,2.03008508413456,0.770243085573222,2.76306614507033,0.551346289938122,2.57808587683857,4.0604674295984,1.27839941124151,4.18450567539666,0,0,0,0.10115778085555,0,3.46293581513704,0.6970372701606,0.308033580176089,2.12922412126809,3.47973196830029,1.11194531462352,0.143124886741991,1.116475108079,0,1.90630193923825,1.79128453917934,2.56763392820352,1.59101623962968,0,2.15846949099978,3.56898138656871,1.17812402345686,0.606547444719948,1.58510321173008,0.421258456238981,0.48763373908959,0.974853958525138,3.16950440270266,1.77449884830381,3.95935209470396,3.39024349860728,0,0.66343897524122,0,4.05142873986681,3.9353685122798,0,1.54911749049875,0.563391205064483,0.573645408816206,0.687743287091848,0.7133421029625,0,1.89996871767898,1.64647446479951,1.51789269506286,2.0996083214699,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.95497793895076,0,0.307160702099232,0.994147647766298,0,0.111308705022906,0,0.211125408127993,0.796991953004279,0.552567831062295,0,0.20453736500431,0,3.42143546427988,0,0,0,0.986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0.236387681767936,0.344743373241465,0,0.173624994933292,0.885741385813839,0.120596438625408,0,0.442317039724898,0.295547618953547,0,0,0,0.615602068030377,0.227884111694002,0,0,0,0,0.915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,1.99052386215701,0.265372693510018,0,0,0,0,0,0.802577647298789,0,0,0,0.485560759068186,0.394584402849391,0,0,0.252746318513952,0,0,0.664653872707185,0,0,0,0.853828638089378,0,0.520679215005393,0,0,0.52418000472609,0.859930162358083,0,0,0,0.581934098930517,0,0,0,0,0,0.195551382734803,0,1.28071796843612,2.19790570540343,0.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| ||
|short_description=p7@COL6A1 | |short_description=p7@COL6A1 | ||
}} | }} |
Latest revision as of 22:15, 18 September 2015
Short description: | p7@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -139bp_to_ENST00000486023, uc002zhw.1_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.44e-30 | 76 |
multi fate stem cell | 6.07e-21 | 427 |
somatic stem cell | 4.31e-20 | 433 |
stem cell | 5.35e-19 | 441 |
connective tissue cell | 6.28e-14 | 361 |
skin fibroblast | 4.15e-12 | 23 |
muscle precursor cell | 5.43e-12 | 58 |
myoblast | 5.43e-12 | 58 |
multi-potent skeletal muscle stem cell | 5.43e-12 | 58 |
muscle cell | 2.89e-11 | 55 |
mesenchymal cell | 5.06e-11 | 354 |
preadipocyte | 3.42e-10 | 12 |
stromal cell | 4.41e-10 | 28 |
electrically responsive cell | 5.22e-10 | 61 |
electrically active cell | 5.22e-10 | 61 |
motile cell | 3.46e-09 | 386 |
smooth muscle cell | 9.09e-09 | 43 |
smooth muscle myoblast | 9.09e-09 | 43 |
mesenchymal stem cell of adipose | 8.22e-08 | 8 |
extracellular matrix secreting cell | 2.17e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.55e-15 | 73 |
somite | 5.87e-15 | 71 |
presomitic mesoderm | 5.87e-15 | 71 |
presumptive segmental plate | 5.87e-15 | 71 |
dermomyotome | 5.87e-15 | 71 |
trunk paraxial mesoderm | 5.87e-15 | 71 |
integument | 5.95e-15 | 46 |
integumental system | 5.95e-15 | 46 |
paraxial mesoderm | 1.40e-14 | 72 |
presumptive paraxial mesoderm | 1.40e-14 | 72 |
connective tissue | 3.18e-13 | 371 |
surface structure | 4.21e-13 | 99 |
multilaminar epithelium | 1.32e-12 | 83 |
epithelial vesicle | 1.58e-12 | 78 |
skin of body | 3.13e-12 | 41 |
trunk mesenchyme | 1.34e-11 | 122 |
muscle tissue | 1.82e-11 | 64 |
musculature | 1.82e-11 | 64 |
musculature of body | 1.82e-11 | 64 |
mesenchyme | 1.99e-11 | 160 |
entire embryonic mesenchyme | 1.99e-11 | 160 |
skeletal muscle tissue | 2.25e-11 | 62 |
striated muscle tissue | 2.25e-11 | 62 |
myotome | 2.25e-11 | 62 |
adipose tissue | 1.60e-07 | 14 |
smooth muscle tissue | 1.61e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.95e-07 | 5 |
myotonic disease | 3.95e-07 | 5 |
muscle tissue disease | 3.95e-07 | 5 |
myopathy | 3.95e-07 | 5 |
muscular disease | 3.95e-07 | 5 |
myotonic dystrophy | 3.95e-07 | 5 |