FFCP PHASE1:Hg19::chr21:47422241..47422263,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1291 | |EntrezGene=1291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |HGNC=2211 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-139bp_to_ENST00000486023,uc002zhw.1_5end | |association_with_transcript=-139bp_to_ENST00000486023,uc002zhw.1_5end | ||
|cluster_id=chr21:47422241..47422263,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_7_at_COL6A1_5end | |description=CAGE_peak_7_at_COL6A1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!8.63e-42!180;CL:0000057!1.10e-28!75;CL:0000680!4.56e-13!57;CL:0000056!4.56e-13!57;CL:0000355!4.56e-13!57;CL:0000183!6.88e-13!59;CL:0000187!8.61e-13!54;CL:0000393!2.34e-12!60;CL:0000211!2.34e-12!60;CL:0002620!5.01e-11!23;CL:0000192!4.40e-10!42;CL:0000514!4.40e-10!42;CL:0000048!2.13e-09!430;CL:0000723!1.54e-08!436;CL:0000034!1.79e-08!444;CL:0000499!2.48e-08!27;CL:0000359!8.10e-07!32 | |ontology_enrichment_celltype=CL:0000055!8.63e-42!180;CL:0000057!1.10e-28!75;CL:0000680!4.56e-13!57;CL:0000056!4.56e-13!57;CL:0000355!4.56e-13!57;CL:0000183!6.88e-13!59;CL:0000187!8.61e-13!54;CL:0000393!2.34e-12!60;CL:0000211!2.34e-12!60;CL:0002620!5.01e-11!23;CL:0000192!4.40e-10!42;CL:0000514!4.40e-10!42;CL:0000048!2.13e-09!430;CL:0000723!1.54e-08!436;CL:0000034!1.79e-08!444;CL:0000499!2.48e-08!27;CL:0000359!8.10e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002620;8.88e-12;23!CL:0000057;2.44e-11;73!CL:0002334;3.26e-10;12!CL:0000499;6.42e-10;28!CL:0000723;2.96e-09;61!CL:0002320;5.16e-09;188!CL:0000134;1.87e-08;55!CL:0000048;3.81e-08;58!CL:0002570;9.29e-08;8!CL:0000034;2.10e-07;69!CL:0000327;3.04e-07;15!CL:0000187;6.97e-07;55!CL:0000192;9.84e-07;43 | |ontology_enrichment_celltype_v019=CL:0002620;8.88e-12;23!CL:0000057;2.44e-11;73!CL:0002334;3.26e-10;12!CL:0000499;6.42e-10;28!CL:0000723;2.96e-09;61!CL:0002320;5.16e-09;188!CL:0000134;1.87e-08;55!CL:0000048;3.81e-08;58!CL:0002570;9.29e-08;8!CL:0000034;2.10e-07;69!CL:0000327;3.04e-07;15!CL:0000187;6.97e-07;55!CL:0000192;9.84e-07;43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.44e-30,76;CL:0000048,6.07e-21,427;CL:0000723,4.31e-20,433;CL:0000034,5.35e-19,441;CL:0002320,6.28e-14,361;CL:0002620,4.15e-12,23;CL:0000680,5.43e-12,58;CL:0000056,5.43e-12,58;CL:0000355,5.43e-12,58;CL:0000187,2.89e-11,55;CL:0000134,5.06e-11,354;CL:0002334,3.42e-10,12;CL:0000499,4.41e-10,28;CL:0000393,5.22e-10,61;CL:0000211,5.22e-10,61;CL:0000219,3.46e-09,386;CL:0000192,9.09e-09,43;CL:0000514,9.09e-09,43;CL:0002570,8.22e-08,8;CL:0000327,2.17e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000355;5.17e-07;58!CL:0000514;9.84e-07;43 | |ontology_enrichment_development_v019=CL:0000355;5.17e-07;58!CL:0000514;9.84e-07;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;6.62e-07;5!DOID:450;6.62e-07;5!DOID:66;6.62e-07;5!DOID:423;6.62e-07;5!DOID:0080000;6.62e-07;5!DOID:11722;6.62e-07;5 | |ontology_enrichment_disease_v019=DOID:17;6.62e-07;5!DOID:450;6.62e-07;5!DOID:66;6.62e-07;5!DOID:423;6.62e-07;5!DOID:0080000;6.62e-07;5!DOID:11722;6.62e-07;5 | ||
|ontology_enrichment_disease_v019_2=DOID:17,3.95e-07,5;DOID:450,3.95e-07,5;DOID:66,3.95e-07,5;DOID:423,3.95e-07,5;DOID:0080000,3.95e-07,5;DOID:11722,3.95e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.07e-17!83;UBERON:0002329!2.07e-17!83;UBERON:0003077!2.07e-17!83;UBERON:0003059!2.07e-17!83;UBERON:0007282!2.07e-17!83;UBERON:0009618!2.07e-17!83;UBERON:0007285!2.07e-17!83;UBERON:0004290!7.82e-17!70;UBERON:0002385!1.92e-13!63;UBERON:0001015!1.92e-13!63;UBERON:0000383!1.92e-13!63;UBERON:0000486!2.92e-13!82;UBERON:0005256!4.08e-13!143;UBERON:0001134!4.56e-13!61;UBERON:0002036!4.56e-13!61;UBERON:0003082!4.56e-13!61;UBERON:0000475!4.50e-12!365;UBERON:0003102!7.59e-12!95;UBERON:0002199!3.51e-10!45;UBERON:0002416!3.51e-10!45;UBERON:0002100!6.79e-10!216;UBERON:0002097!1.26e-08!40;UBERON:0000481!1.72e-08!347;UBERON:0003104!7.82e-07!238;UBERON:0009142!7.82e-07!238;UBERON:0001135!8.31e-07!15 | |ontology_enrichment_uberon=UBERON:0000914!2.07e-17!83;UBERON:0002329!2.07e-17!83;UBERON:0003077!2.07e-17!83;UBERON:0003059!2.07e-17!83;UBERON:0007282!2.07e-17!83;UBERON:0009618!2.07e-17!83;UBERON:0007285!2.07e-17!83;UBERON:0004290!7.82e-17!70;UBERON:0002385!1.92e-13!63;UBERON:0001015!1.92e-13!63;UBERON:0000383!1.92e-13!63;UBERON:0000486!2.92e-13!82;UBERON:0005256!4.08e-13!143;UBERON:0001134!4.56e-13!61;UBERON:0002036!4.56e-13!61;UBERON:0003082!4.56e-13!61;UBERON:0000475!4.50e-12!365;UBERON:0003102!7.59e-12!95;UBERON:0002199!3.51e-10!45;UBERON:0002416!3.51e-10!45;UBERON:0002100!6.79e-10!216;UBERON:0002097!1.26e-08!40;UBERON:0000481!1.72e-08!347;UBERON:0003104!7.82e-07!238;UBERON:0009142!7.82e-07!238;UBERON:0001135!8.31e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;3.82e-10;31!UBERON:0001015;3.82e-10;31!UBERON:0000383;3.82e-10;31!UBERON:0002199;8.65e-10;46!UBERON:0002416;8.65e-10;46!UBERON:0002097;2.08e-09;41!UBERON:0002384;2.37e-09;198!UBERON:0003102;8.60e-09;50!UBERON:0001135;9.03e-08;15!UBERON:0001013;2.10e-07;14!UBERON:0002204;8.80e-07;70 | |ontology_enrichment_uberon_v019=UBERON:0002385;3.82e-10;31!UBERON:0001015;3.82e-10;31!UBERON:0000383;3.82e-10;31!UBERON:0002199;8.65e-10;46!UBERON:0002416;8.65e-10;46!UBERON:0002097;2.08e-09;41!UBERON:0002384;2.37e-09;198!UBERON:0003102;8.60e-09;50!UBERON:0001135;9.03e-08;15!UBERON:0001013;2.10e-07;14!UBERON:0002204;8.80e-07;70 | ||
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| ||
|short_description=p7@COL6A1 | |short_description=p7@COL6A1 | ||
}} | }} |
Latest revision as of 22:15, 18 September 2015
Short description: | p7@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -139bp_to_ENST00000486023, uc002zhw.1_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.44e-30 | 76 |
multi fate stem cell | 6.07e-21 | 427 |
somatic stem cell | 4.31e-20 | 433 |
stem cell | 5.35e-19 | 441 |
connective tissue cell | 6.28e-14 | 361 |
skin fibroblast | 4.15e-12 | 23 |
muscle precursor cell | 5.43e-12 | 58 |
myoblast | 5.43e-12 | 58 |
multi-potent skeletal muscle stem cell | 5.43e-12 | 58 |
muscle cell | 2.89e-11 | 55 |
mesenchymal cell | 5.06e-11 | 354 |
preadipocyte | 3.42e-10 | 12 |
stromal cell | 4.41e-10 | 28 |
electrically responsive cell | 5.22e-10 | 61 |
electrically active cell | 5.22e-10 | 61 |
motile cell | 3.46e-09 | 386 |
smooth muscle cell | 9.09e-09 | 43 |
smooth muscle myoblast | 9.09e-09 | 43 |
mesenchymal stem cell of adipose | 8.22e-08 | 8 |
extracellular matrix secreting cell | 2.17e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.55e-15 | 73 |
somite | 5.87e-15 | 71 |
presomitic mesoderm | 5.87e-15 | 71 |
presumptive segmental plate | 5.87e-15 | 71 |
dermomyotome | 5.87e-15 | 71 |
trunk paraxial mesoderm | 5.87e-15 | 71 |
integument | 5.95e-15 | 46 |
integumental system | 5.95e-15 | 46 |
paraxial mesoderm | 1.40e-14 | 72 |
presumptive paraxial mesoderm | 1.40e-14 | 72 |
connective tissue | 3.18e-13 | 371 |
surface structure | 4.21e-13 | 99 |
multilaminar epithelium | 1.32e-12 | 83 |
epithelial vesicle | 1.58e-12 | 78 |
skin of body | 3.13e-12 | 41 |
trunk mesenchyme | 1.34e-11 | 122 |
muscle tissue | 1.82e-11 | 64 |
musculature | 1.82e-11 | 64 |
musculature of body | 1.82e-11 | 64 |
mesenchyme | 1.99e-11 | 160 |
entire embryonic mesenchyme | 1.99e-11 | 160 |
skeletal muscle tissue | 2.25e-11 | 62 |
striated muscle tissue | 2.25e-11 | 62 |
myotome | 2.25e-11 | 62 |
adipose tissue | 1.60e-07 | 14 |
smooth muscle tissue | 1.61e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.95e-07 | 5 |
myotonic disease | 3.95e-07 | 5 |
muscle tissue disease | 3.95e-07 | 5 |
myopathy | 3.95e-07 | 5 |
muscular disease | 3.95e-07 | 5 |
myotonic dystrophy | 3.95e-07 | 5 |