FFCP PHASE1:Hg19::chr10:70847852..70847873,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:70847852..70847873,+ to FFCP PHASE1:Hg19::chr10:70847852..70847873,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5552 | |EntrezGene=5552 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9361 | |HGNC=9361 | ||
|TSSclassifier=strong | |||
|UniProt=P10124 | |UniProt=P10124 | ||
|association_with_transcript=0bp_to_ENST00000242465,ENST00000462445,uc001jpa.1_5end | |||
|cluster_id=chr10:70847852..70847873,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_SRGN_5end | |||
|id=chr10:70847852..70847873,+ | |||
|ontology_enrichment_celltype=CL:0000037!5.50e-49!172;CL:0000566!5.50e-49!172;CL:0000988!1.14e-47!182;CL:0002032!2.82e-46!165;CL:0000837!2.82e-46!165;CL:0000738!7.23e-43!140;CL:0000763!3.12e-42!112;CL:0000049!3.12e-42!112;CL:0000766!7.54e-37!76;CL:0002031!2.61e-35!124;CL:0000839!2.66e-32!70;CL:0002087!3.64e-32!119;CL:0000557!6.28e-32!71;CL:0000048!1.35e-31!430;CL:0002320!3.64e-29!365;CL:0002009!4.14e-29!65;CL:0000723!1.01e-28!436;CL:0002194!1.73e-28!63;CL:0000576!1.73e-28!63;CL:0000040!1.73e-28!63;CL:0000559!1.73e-28!63;CL:0000134!1.98e-28!358;CL:0000034!1.24e-27!444;CL:0002057!1.06e-26!42;CL:0000860!1.48e-22!45;CL:0000219!2.05e-18!390;CL:0002371!3.11e-08!591 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.63e-20;33!CL:0002057;5.63e-20;33!CL:0000576;1.92e-18;48!CL:0000473;6.45e-18;39!CL:0000234;6.45e-18;39!CL:0000766;4.55e-17;69!CL:0000763;1.10e-12;100!CL:0002087;3.13e-10;104!CL:0000738;4.89e-10;136!CL:0000988;1.26e-08;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.08e-51,168;CL:0000988,1.21e-49,177;CL:0002032,1.13e-48,161;CL:0000837,1.13e-48,161;CL:0000738,1.99e-45,136;CL:0000763,3.13e-45,108;CL:0000049,3.13e-45,108;CL:0000766,1.64e-40,72;CL:0002031,9.72e-38,120;CL:0000839,7.88e-36,66;CL:0000557,2.19e-35,67;CL:0002087,1.67e-34,115;CL:0000048,5.86e-33,427;CL:0002009,1.46e-32,61;CL:0002194,5.72e-32,59;CL:0000576,5.72e-32,59;CL:0000040,5.72e-32,59;CL:0000559,5.72e-32,59;CL:0002320,1.69e-30,361;CL:0000723,6.56e-30,433;CL:0000134,9.35e-30,354;CL:0000034,7.90e-29,441;CL:0000473,5.25e-28,48;CL:0000234,5.25e-28,48;CL:0000860,9.40e-27,42;CL:0002057,9.40e-27,42;CL:0000219,1.33e-19,386 | |||
|ontology_enrichment_development_v019=CL:0002057;2.08e-19;42!CL:0000049;1.87e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.59e-44!112;UBERON:0002390!5.36e-42!102;UBERON:0003061!5.36e-42!102;UBERON:0003081!1.61e-35!216;UBERON:0002371!1.04e-33!80;UBERON:0002405!6.79e-29!115;UBERON:0001474!2.15e-28!86;UBERON:0002384!6.53e-28!375;UBERON:0004765!3.68e-23!101;UBERON:0001434!3.68e-23!101;UBERON:0002204!3.77e-21!167;UBERON:0004535!2.46e-14!110;UBERON:0001009!5.86e-14!113;UBERON:0000055!4.69e-09!69;UBERON:0004872!6.25e-09!84;UBERON:0002049!5.38e-08!79;UBERON:0007798!5.38e-08!79;UBERON:0001981!2.12e-07!60;UBERON:0007500!2.12e-07!60;UBERON:0004537!2.12e-07!60;UBERON:0006965!2.12e-07!60;UBERON:0000178!3.85e-07!15;UBERON:0000179!3.85e-07!15;UBERON:0000463!3.85e-07!15;UBERON:0004573!8.55e-07!33;UBERON:0004571!8.55e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;2.68e-09;32!UBERON:0002193;1.49e-08;42!UBERON:0000178;3.74e-07;15!UBERON:0000179;3.74e-07;15!UBERON:0000463;3.74e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.12e-47,108;UBERON:0002390,3.31e-45,98;UBERON:0003061,3.31e-45,98;UBERON:0003081,1.14e-41,203;UBERON:0002405,3.74e-40,93;UBERON:0002371,5.45e-37,76;UBERON:0001474,6.05e-31,82;UBERON:0004765,9.24e-30,90;UBERON:0002384,3.20e-29,371;UBERON:0001434,8.46e-26,100;UBERON:0000926,1.68e-23,315;UBERON:0004120,1.68e-23,315;UBERON:0006603,1.68e-23,315;UBERON:0002204,4.79e-23,167;UBERON:0004535,5.58e-14,109;UBERON:0001009,1.31e-13,112;UBERON:0000055,8.73e-09,68;UBERON:0004872,1.06e-08,83;UBERON:0002049,1.10e-07,78;UBERON:0007798,1.10e-07,78;UBERON:0000178,3.75e-07,15;UBERON:0000179,3.75e-07,15;UBERON:0000463,3.75e-07,15;UBERON:0007500,3.86e-07,59;UBERON:0001981,3.86e-07,59;UBERON:0004537,3.86e-07,59;UBERON:0006965,3.86e-07,59;UBERON:0004573,8.33e-07,33;UBERON:0004571,8.33e-07,33 | |||
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| ||
|short_description=p1@SRGN | |||
}} | }} |
Latest revision as of 00:18, 19 September 2015
Short description: | p1@SRGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SRGN_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000242465, ENST00000462445, uc001jpa.1_5end |
EntrezGene: | SRGN |
HGNC: | 9361 |
UniProt: | P10124 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.08e-51 | 168 |
hematopoietic cell | 1.21e-49 | 177 |
hematopoietic oligopotent progenitor cell | 1.13e-48 | 161 |
hematopoietic multipotent progenitor cell | 1.13e-48 | 161 |
leukocyte | 1.99e-45 | 136 |
myeloid cell | 3.13e-45 | 108 |
common myeloid progenitor | 3.13e-45 | 108 |
myeloid leukocyte | 1.64e-40 | 72 |
hematopoietic lineage restricted progenitor cell | 9.72e-38 | 120 |
myeloid lineage restricted progenitor cell | 7.88e-36 | 66 |
granulocyte monocyte progenitor cell | 2.19e-35 | 67 |
nongranular leukocyte | 1.67e-34 | 115 |
multi fate stem cell | 5.86e-33 | 427 |
macrophage dendritic cell progenitor | 1.46e-32 | 61 |
monopoietic cell | 5.72e-32 | 59 |
monocyte | 5.72e-32 | 59 |
monoblast | 5.72e-32 | 59 |
promonocyte | 5.72e-32 | 59 |
connective tissue cell | 1.69e-30 | 361 |
somatic stem cell | 6.56e-30 | 433 |
mesenchymal cell | 9.35e-30 | 354 |
stem cell | 7.90e-29 | 441 |
defensive cell | 5.25e-28 | 48 |
phagocyte | 5.25e-28 | 48 |
classical monocyte | 9.40e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.40e-27 | 42 |
motile cell | 1.33e-19 | 386 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 7.12e-47 | 108 |
hematopoietic system | 3.31e-45 | 98 |
blood island | 3.31e-45 | 98 |
lateral plate mesoderm | 1.14e-41 | 203 |
immune system | 3.74e-40 | 93 |
bone marrow | 5.45e-37 | 76 |
bone element | 6.05e-31 | 82 |
skeletal element | 9.24e-30 | 90 |
connective tissue | 3.20e-29 | 371 |
skeletal system | 8.46e-26 | 100 |
mesoderm | 1.68e-23 | 315 |
mesoderm-derived structure | 1.68e-23 | 315 |
presumptive mesoderm | 1.68e-23 | 315 |
musculoskeletal system | 4.79e-23 | 167 |
cardiovascular system | 5.58e-14 | 109 |
circulatory system | 1.31e-13 | 112 |
vessel | 8.73e-09 | 68 |
splanchnic layer of lateral plate mesoderm | 1.06e-08 | 83 |
vasculature | 1.10e-07 | 78 |
vascular system | 1.10e-07 | 78 |
blood | 3.75e-07 | 15 |
haemolymphatic fluid | 3.75e-07 | 15 |
organism substance | 3.75e-07 | 15 |
epithelial tube open at both ends | 3.86e-07 | 59 |
blood vessel | 3.86e-07 | 59 |
blood vasculature | 3.86e-07 | 59 |
vascular cord | 3.86e-07 | 59 |
systemic artery | 8.33e-07 | 33 |
systemic arterial system | 8.33e-07 | 33 |