FFCP PHASE1:Hg19::chr7:5463175..5463195,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84629 | |EntrezGene=84629 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11962 | |HGNC=11962 | ||
|TSSclassifier=strong | |||
|UniProt=B5ME58,C9JS29,O15417,A3KMH2 | |UniProt=B5ME58,C9JS29,O15417,A3KMH2 | ||
|association_with_transcript=0bp_to_ENST00000327499,ENST00000399537,ENST00000399544,ENST00000430969,NM_001080495,uc003soi.3_5end | |association_with_transcript=0bp_to_ENST00000327499,ENST00000399537,ENST00000399544,ENST00000430969,NM_001080495,uc003soi.3_5end | ||
|cluster_id=chr7:5463175..5463195,- | |||
|description=CAGE_peak_5_at_TNRC18_5end | |description=CAGE_peak_5_at_TNRC18_5end | ||
|id=chr7:5463175..5463195,- | |id=chr7:5463175..5463195,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.99e-20!115;UBERON:0001049!6.92e-10!57;UBERON:0005068!6.92e-10!57;UBERON:0006241!6.92e-10!57;UBERON:0007135!6.92e-10!57;UBERON:0003075!1.24e-09!86;UBERON:0007284!1.24e-09!86;UBERON:0002346!1.44e-09!90;UBERON:0000955!9.42e-09!69;UBERON:0006238!9.42e-09!69;UBERON:0001893!2.40e-08!34;UBERON:0002020!3.17e-08!34;UBERON:0003528!3.17e-08!34;UBERON:0002616!3.22e-08!59;UBERON:0001017!4.77e-08!82;UBERON:0002791!5.07e-08!33;UBERON:0000062!6.37e-08!511;UBERON:0005743!8.67e-08!86;UBERON:0003080!8.98e-08!42;UBERON:0001869!1.05e-07!32;UBERON:0002780!2.62e-07!41;UBERON:0001890!2.62e-07!41;UBERON:0006240!2.62e-07!41;UBERON:0000033!4.89e-07!123;UBERON:0000924!5.73e-07!173;UBERON:0006601!5.73e-07!173;UBERON:0000468!6.16e-07!659;UBERON:0004121!6.63e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.56e-08;32!UBERON:0002791;1.74e-08;32!UBERON:0001893;1.87e-08;34!UBERON:0003528;2.42e-08;34!UBERON:0002020;2.42e-08;34!UBERON:0001950;4.95e-08;20!UBERON:0002619;8.70e-08;22!UBERON:0000956;2.13e-07;25!UBERON:0000203;2.13e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.36e-22,114;UBERON:0001893,2.53e-10,34;UBERON:0003528,3.56e-10,34;UBERON:0002020,3.56e-10,34;UBERON:0001049,3.75e-10,56;UBERON:0005068,3.75e-10,56;UBERON:0006241,3.75e-10,56;UBERON:0007135,3.75e-10,56;UBERON:0000073,7.62e-10,53;UBERON:0002616,7.62e-10,53;UBERON:0002791,1.22e-09,32;UBERON:0001869,1.53e-09,32;UBERON:0000955,3.55e-09,68;UBERON:0006238,3.55e-09,68;UBERON:0001017,1.40e-08,81;UBERON:0002780,2.51e-08,41;UBERON:0001890,2.51e-08,41;UBERON:0003080,2.51e-08,41;UBERON:0006240,2.51e-08,41;UBERON:0003075,3.28e-08,82;UBERON:0007284,3.28e-08,82;UBERON:0002346,5.66e-08,86;UBERON:0001950,6.12e-08,20;UBERON:0002619,1.28e-07,22;UBERON:0000956,2.01e-07,25;UBERON:0000203,2.01e-07,25;UBERON:0010314,4.82e-07,132;UBERON:0001016,8.33e-07,89 | |||
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| ||
|short_description=p5@TNRC18 | |short_description=p5@TNRC18 | ||
}} | }} |
Latest revision as of 00:19, 19 September 2015
Short description: | p5@TNRC18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TNRC18_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000327499, ENST00000399537, ENST00000399544, ENST00000430969, NM_001080495, uc003soi.3_5end |
EntrezGene: | TNRC18 |
HGNC: | 11962 |
UniProt: | B5ME58C9JS29O15417A3KMH2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.36e-22 | 114 |
telencephalon | 2.53e-10 | 34 |
brain grey matter | 3.56e-10 | 34 |
gray matter | 3.56e-10 | 34 |
neural tube | 3.75e-10 | 56 |
neural rod | 3.75e-10 | 56 |
future spinal cord | 3.75e-10 | 56 |
neural keel | 3.75e-10 | 56 |
regional part of nervous system | 7.62e-10 | 53 |
regional part of brain | 7.62e-10 | 53 |
regional part of telencephalon | 1.22e-09 | 32 |
cerebral hemisphere | 1.53e-09 | 32 |
brain | 3.55e-09 | 68 |
future brain | 3.55e-09 | 68 |
central nervous system | 1.40e-08 | 81 |
regional part of forebrain | 2.51e-08 | 41 |
forebrain | 2.51e-08 | 41 |
anterior neural tube | 2.51e-08 | 41 |
future forebrain | 2.51e-08 | 41 |
neural plate | 3.28e-08 | 82 |
presumptive neural plate | 3.28e-08 | 82 |
neurectoderm | 5.66e-08 | 86 |
neocortex | 6.12e-08 | 20 |
regional part of cerebral cortex | 1.28e-07 | 22 |
cerebral cortex | 2.01e-07 | 25 |
pallium | 2.01e-07 | 25 |
structure with developmental contribution from neural crest | 4.82e-07 | 132 |
nervous system | 8.33e-07 | 89 |