FFCP PHASE1:Hg19::chr10:72362520..72362544,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:72362520..72362544,- to FFCP PHASE1:Hg19::chr10:72362520..72362544,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5551 | |EntrezGene=5551 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9360 | |HGNC=9360 | ||
|TSSclassifier=strong | |||
|UniProt=P14222 | |UniProt=P14222 | ||
|association_with_transcript=0bp_to_ENST00000318971,ENST00000441259,NM_001083116,NM_005041,uc001jrf.3,uc009xqg.2_5end | |||
|cluster_id=chr10:72362520..72362544,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_PRF1_5end | |||
|id=chr10:72362520..72362544,- | |||
|ontology_enrichment_celltype=CL:0000084!1.16e-26!25;CL:0000827!1.16e-26!25;CL:0000988!3.57e-26!182;CL:0000037!1.75e-25!172;CL:0000566!1.75e-25!172;CL:0000838!2.30e-25!52;CL:0000542!1.35e-24!53;CL:0000051!1.35e-24!53;CL:0002032!2.13e-22!165;CL:0000837!2.13e-22!165;CL:0000738!1.76e-20!140;CL:0000791!4.58e-20!18;CL:0000789!4.58e-20!18;CL:0002420!4.58e-20!18;CL:0002419!4.58e-20!18;CL:0000790!4.58e-20!18;CL:0002087!1.96e-16!119;CL:0002031!1.89e-14!124;CL:0000625!1.55e-13!11;CL:0000080!1.83e-07!6;CL:0000624!5.26e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;4.73e-40;25!CL:0000791;9.82e-34;18!CL:0000789;9.82e-34;18!CL:0002419;9.82e-34;18!CL:0000625;9.17e-25;11!CL:0000542;1.44e-15;53!CL:0000624;8.32e-09;6!CL:0000623;7.42e-08;3!CL:0000898;1.60e-07;3!CL:0000226;3.33e-07;3!CL:0000842;3.33e-07;3!CL:0000767;5.34e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,4.39e-40,25;CL:0000827,4.39e-40,25;CL:0000791,8.68e-34,18;CL:0000789,8.68e-34,18;CL:0002420,8.68e-34,18;CL:0002419,8.68e-34,18;CL:0000790,8.68e-34,18;CL:0000838,5.84e-27,52;CL:0000542,2.72e-26,53;CL:0000051,2.72e-26,53;CL:0000625,8.78e-25,11;CL:0000988,4.16e-20,177;CL:0000037,1.45e-18,168;CL:0002032,9.27e-17,161;CL:0000837,9.27e-17,161;CL:0000738,7.95e-15,136;CL:0002087,6.31e-14,115;CL:0002031,5.56e-11,120;CL:0000624,7.64e-09,6;CL:0000623,7.51e-08,3;CL:0000825,7.51e-08,3;CL:0000898,1.55e-07,3;CL:0000226,3.33e-07,3;CL:0000842,3.33e-07,3;CL:0000767,5.23e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;9.82e-34;18!CL:0000051;1.44e-15;53 | |||
|ontology_enrichment_disease=DOID:2531!3.05e-10!51;DOID:0060083!3.05e-10!51;DOID:1240!2.71e-09!39;DOID:1036!6.39e-08!8 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,2.85e-07,39;DOID:2531,9.21e-07,51;DOID:0060083,9.21e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000178!6.32e-17!15;UBERON:0000179!6.32e-17!15;UBERON:0000463!6.32e-17!15;UBERON:0007023!4.28e-13!115;UBERON:0002390!3.96e-07!102;UBERON:0003061!3.96e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.25e-31;15!UBERON:0000179;2.25e-31;15!UBERON:0000463;2.25e-31;15!UBERON:0002390;4.78e-19;32!UBERON:0002193;1.24e-11;42!UBERON:0004177;6.81e-07;5!UBERON:0005057;6.81e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.21e-31,15;UBERON:0000179,2.21e-31,15;UBERON:0000463,2.21e-31,15;UBERON:0004177,8.55e-11,7;UBERON:0005057,8.55e-11,7;UBERON:0002370,2.56e-09,4;UBERON:0005058,2.56e-09,4;UBERON:0009113,2.56e-09,4;UBERON:0003295,2.56e-09,4;UBERON:0005562,2.56e-09,4;UBERON:0002193,4.05e-08,108;UBERON:0002390,5.59e-08,98;UBERON:0003061,5.59e-08,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764134057479513,0.656804715599566,0.472264687882075,5.50709987588466,4.98978217526377,3.71558695958582,0,0,0,0.309868802321207,0,0.293600439334847,3.32397245119126,2.4065333696417,1.51907609501096,0.671746422719773,2.26725566213286,0.515151135268373,0.145398238779565,0,0,0.697287110717054,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0.251248665256743,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0.546138611262131,0,0,0,1.14950487990897,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0.983548850569165,1.96505381374582,2.05601498999509,47.8153376817339,6.51844533267181,9.9424039204294,9.74133642039557,19.3854194980202,14.435689466267,10.4120930454302,19.4978781910811,22.4159809519932,23.9309199510176,61.9930900355859,59.1389038061715,47.2379029748136,5.33831627383417,2.67540828089713,1.04535523804977,32.8597093822942,7.66440987203842,15.1196076012357,10.8798467568386,19.751055688094,22.1368374311182,24.7117531556577,19.2736152419549,20.6058443958614,28.7340671070395,22.9673934482696,22.9915839137893,6.45141578319144,6.15112450302067,4.63438092424957,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.785874452986276,0,0,0.649094787309367,0,0.132957960518865,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0.141775097242386,0,0,0,0,1.05658120815871,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.0212859983818,17.9297991783754,10.5657511681163,14.5027630996116,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,6.20304078368662,5.1771408196468,5.87001567918944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,0.376575203107117,0.43050537267123,0,0,0,12.1787426215721,10.7049208999933,11.9625909306574,15.9615289556719,13.9863172849306,11.0240462902762,9.72056587028607,15.0693783495911,0,0,0,0,0,0.853702120180969,0.478278818186467,3.99158742865633,0.191505370132367,1.69338866179106,0,0,3.87998954356427,0,0,0.50787533340481,0,0,0,0,0.307240764308458,0,0.166849141711909,0,0,1.23087398947712,0.540911356951966,3.99686361597384,0,0,0.293016358543788,0,87.2601698892656,0,0,0,0,0,0,0,28.1814624927759,0,0.398495976502139,1.38141957765574,0,0,2.33861130376032,0,0.0898683511473268,0,0,0.0986434056369336,16.7638164642858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0.31900115973192,0,0.533034776018635,9.19739683761629,0.627921025580099,3.8228686837036,1.1279783030859,1.9606253431774,2.68514539161348,0.948768663620925,1.43042921082341,0,0,0,0,0,0.973033209536731,0.611030144933625,3.85477467284809,13.4684693451688,11.3819924960946,0,0.802577647298789,0,0.91227394607833,0,0,0,0,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.678923115418936,0,0,0,0,0.126621591911757,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,10.7783815254519,0,0.458320848023367,0,0,0.429226048136571,0.446342914883745,0,0,0,0.157566364614447,0.0824158583811665,0.26961417541674,0,0.423366660328922,0,0.136203406111576,0.160753148465019,0,0,0,0,0,0,0.236417121897595,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0.903017728242729,0,0,0.146552233678082,0,0.129282956361551,0.13223260174269,0,0,3.63077202730162,0.157204305099666,3.31391244277756,3.47316215268366,0.197611631897944,0,0,0,0,0,0,0.157054096250234,0,0,0.250381861413,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.531459361253452,0.163565394255844,0,0,0,4.19973531295353,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.322951291263702,0,0,0,0,0,0,0,0,0.676892955143315,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0.496211178389294,0,0,0,0,0,0,0.266107110487916,0.460935950223117,0,0,0,0,0,0.549451649953598,0,0.280272163313789,0,0.215927591218621,0,0.500335809236594,0,0,0,0,0,0,0,0.430227358820278,0,0,0.846774100381858,0,0,0,0,0,0.487671699929078,0,0.205325613712494,0,0.485710993059139,0,0,0,0.11294608203896,0.219881033490858,0,1.389134845943,0.874238242015829,0,0,0,0,0.297046400327086,0,0,5.2630994068718,2.06265241515447,0,0,0,0,0,1.37618785021362,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,8.56706169832647,3.74104367371785,0.551369397209069,0,0.378893491091197,0,0,0,0.213233981900981,0,6.13594643442058,2.79336214331361,0,0.445530107947154,0,0,0,2.89613827962726,1.14755528628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| ||
|short_description=p3@PRF1 | |||
}} | }} |
Latest revision as of 02:31, 19 September 2015
Short description: | p3@PRF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000318971, ENST00000441259, NM_001083116, NM_005041, uc001jrf.3, uc009xqg.2_5end |
EntrezGene: | PRF1 |
HGNC: | 9360 |
UniProt: | P14222 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 4.39e-40 | 25 |
pro-T cell | 4.39e-40 | 25 |
mature alpha-beta T cell | 8.68e-34 | 18 |
alpha-beta T cell | 8.68e-34 | 18 |
immature T cell | 8.68e-34 | 18 |
mature T cell | 8.68e-34 | 18 |
immature alpha-beta T cell | 8.68e-34 | 18 |
lymphoid lineage restricted progenitor cell | 5.84e-27 | 52 |
lymphocyte | 2.72e-26 | 53 |
common lymphoid progenitor | 2.72e-26 | 53 |
CD8-positive, alpha-beta T cell | 8.78e-25 | 11 |
hematopoietic cell | 4.16e-20 | 177 |
hematopoietic stem cell | 1.45e-18 | 168 |
hematopoietic oligopotent progenitor cell | 9.27e-17 | 161 |
hematopoietic multipotent progenitor cell | 9.27e-17 | 161 |
leukocyte | 7.95e-15 | 136 |
nongranular leukocyte | 6.31e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 5.56e-11 | 120 |
CD4-positive, alpha-beta T cell | 7.64e-09 | 6 |
natural killer cell | 7.51e-08 | 3 |
pro-NK cell | 7.51e-08 | 3 |
naive T cell | 1.55e-07 | 3 |
single nucleate cell | 3.33e-07 | 3 |
mononuclear cell | 3.33e-07 | 3 |
basophil | 5.23e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 2.21e-31 | 15 |
haemolymphatic fluid | 2.21e-31 | 15 |
organism substance | 2.21e-31 | 15 |
hemopoietic organ | 8.55e-11 | 7 |
immune organ | 8.55e-11 | 7 |
thymus | 2.56e-09 | 4 |
hemolymphoid system gland | 2.56e-09 | 4 |
thymic region | 2.56e-09 | 4 |
pharyngeal gland | 2.56e-09 | 4 |
thymus primordium | 2.56e-09 | 4 |
hemolymphoid system | 4.05e-08 | 108 |
hematopoietic system | 5.59e-08 | 98 |
blood island | 5.59e-08 | 98 |
Ontology term | p-value | n |
---|---|---|
leukemia | 2.85e-07 | 39 |
hematologic cancer | 9.21e-07 | 51 |
immune system cancer | 9.21e-07 | 51 |