FFCP PHASE1:Hg19::chr3:57583130..57583152,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=378 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=655 | |||
|TSSclassifier=strong | |||
|UniProt=P18085 | |||
|association_with_transcript=0bp_to_ENST00000303436,ENST00000493378_5end | |||
|cluster_id=chr3:57583130..57583152,- | |||
|coexpression_cluster_id=C938 | |||
|description=CAGE_peak_3_at_ARF4_5end | |||
|id=chr3:57583130..57583152,- | |||
|ontology_enrichment_celltype=CL:0000055!6.24e-38!180;CL:0000680!1.20e-21!57;CL:0000056!1.20e-21!57;CL:0000355!1.20e-21!57;CL:0000187!3.36e-21!54;CL:0000183!5.46e-21!59;CL:0000393!1.54e-20!60;CL:0000211!1.54e-20!60;CL:0000220!4.37e-19!246;CL:0002321!5.90e-19!248;CL:0000192!1.33e-18!42;CL:0000514!1.33e-18!42;CL:0000222!5.03e-18!119;CL:0000057!5.44e-15!75;CL:0000359!9.65e-15!32;CL:0002334!6.08e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.80e-14;32!CL:0000192;1.96e-13;43!CL:0000187;4.32e-12;55!CL:0000393;8.44e-11;61!CL:0000211;8.44e-11;61!CL:0000057;5.44e-07;73!CL:0002334;6.14e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,7.73e-22,58;CL:0000056,7.73e-22,58;CL:0000355,7.73e-22,58;CL:0000187,2.19e-21,55;CL:0000393,9.73e-21,61;CL:0000211,9.73e-21,61;CL:0002321,3.18e-19,250;CL:0000192,9.02e-19,43;CL:0000514,9.02e-19,43;CL:0000222,3.02e-18,121;CL:0000057,1.51e-15,76;CL:0000359,9.65e-15,32;CL:0002334,6.08e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;1.96e-13;43!CL:0000355;1.77e-11;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.28e-24!83;UBERON:0002329!4.28e-24!83;UBERON:0003077!4.28e-24!83;UBERON:0003059!4.28e-24!83;UBERON:0007282!4.28e-24!83;UBERON:0009618!4.28e-24!83;UBERON:0007285!4.28e-24!83;UBERON:0005256!1.53e-22!143;UBERON:0004290!4.96e-22!70;UBERON:0002100!7.47e-22!216;UBERON:0000486!4.20e-21!82;UBERON:0000490!1.10e-20!138;UBERON:0001134!1.10e-20!61;UBERON:0002036!1.10e-20!61;UBERON:0003082!1.10e-20!61;UBERON:0002385!2.21e-19!63;UBERON:0001015!2.21e-19!63;UBERON:0000383!2.21e-19!63;UBERON:0000475!3.60e-19!365;UBERON:0003104!1.42e-16!238;UBERON:0009142!1.42e-16!238;UBERON:0000481!5.61e-16!347;UBERON:0002049!3.17e-15!79;UBERON:0007798!3.17e-15!79;UBERON:0000119!7.65e-15!312;UBERON:0000483!3.00e-14!309;UBERON:0001637!1.63e-13!42;UBERON:0003509!1.63e-13!42;UBERON:0004572!1.63e-13!42;UBERON:0003914!1.89e-13!118;UBERON:0004872!4.86e-13!84;UBERON:0000055!1.35e-12!69;UBERON:0001981!4.29e-12!60;UBERON:0007500!4.29e-12!60;UBERON:0004537!4.29e-12!60;UBERON:0006965!4.29e-12!60;UBERON:0000468!1.57e-10!659;UBERON:0004573!2.81e-10!33;UBERON:0004571!2.81e-10!33;UBERON:0004535!6.16e-10!110;UBERON:0001009!1.57e-09!113;UBERON:0000477!1.85e-08!286;UBERON:0000480!1.80e-07!626;UBERON:0000922!2.62e-07!612;UBERON:0000467!2.82e-07!625;UBERON:0002050!4.47e-07!605;UBERON:0005423!4.47e-07!605;UBERON:0000923!7.10e-07!604;UBERON:0005291!7.10e-07!604;UBERON:0006598!7.10e-07!604;UBERON:0002532!7.10e-07!604;UBERON:0003102!8.25e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.74e-09;42!UBERON:0003509;1.74e-09;42!UBERON:0004572;1.74e-09;42!UBERON:0004573;3.26e-09;33!UBERON:0004571;3.26e-09;33!UBERON:0007500;2.53e-07;56!UBERON:0001981;2.53e-07;56!UBERON:0004537;2.53e-07;56!UBERON:0002049;6.24e-07;75!UBERON:0007798;6.24e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,1.22e-22,148;UBERON:0002329,3.07e-22,71;UBERON:0003059,3.07e-22,71;UBERON:0007282,3.07e-22,71;UBERON:0004290,3.07e-22,71;UBERON:0009618,3.07e-22,71;UBERON:0007524,3.86e-22,73;UBERON:0003104,1.00e-21,160;UBERON:0009142,1.00e-21,160;UBERON:0003077,1.63e-21,72;UBERON:0007285,1.63e-21,72;UBERON:0000486,2.54e-21,83;UBERON:0007503,3.21e-21,78;UBERON:0005256,6.93e-21,122;UBERON:0001134,6.96e-21,62;UBERON:0002036,6.96e-21,62;UBERON:0003082,6.96e-21,62;UBERON:0002385,1.38e-19,64;UBERON:0001015,1.38e-19,64;UBERON:0000383,1.38e-19,64;UBERON:0002100,2.83e-19,199;UBERON:0000119,2.29e-15,309;UBERON:0000483,9.22e-15,306;UBERON:0002049,1.11e-14,78;UBERON:0007798,1.11e-14,78;UBERON:0001637,1.63e-13,42;UBERON:0003509,1.63e-13,42;UBERON:0004572,1.63e-13,42;UBERON:0003914,3.00e-13,117;UBERON:0004872,1.54e-12,83;UBERON:0000055,4.52e-12,68;UBERON:0007500,1.48e-11,59;UBERON:0001981,1.48e-11,59;UBERON:0004537,1.48e-11,59;UBERON:0006965,1.48e-11,59;UBERON:0004573,2.81e-10,33;UBERON:0004571,2.81e-10,33;UBERON:0004535,1.58e-09,109;UBERON:0001009,3.91e-09,112;UBERON:0003102,3.73e-07,99;UBERON:0004111,9.16e-07,240 | |||
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| |||
|short_description=p3@ARF4 | |||
}} |
Latest revision as of 04:27, 19 September 2015
Short description: | p3@ARF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARF4_5end |
Coexpression cluster: | C938_leiomyoma_Smooth_Preadipocyte_hepatic_basal_Adipocyte_Ewing |
Association with transcript: | 0bp_to_ENST00000303436, ENST00000493378_5end |
EntrezGene: | ARF4 |
HGNC: | 655 |
UniProt: | P18085 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 7.73e-22 | 58 |
myoblast | 7.73e-22 | 58 |
multi-potent skeletal muscle stem cell | 7.73e-22 | 58 |
muscle cell | 2.19e-21 | 55 |
electrically responsive cell | 9.73e-21 | 61 |
electrically active cell | 9.73e-21 | 61 |
embryonic cell | 3.18e-19 | 250 |
smooth muscle cell | 9.02e-19 | 43 |
smooth muscle myoblast | 9.02e-19 | 43 |
mesodermal cell | 3.02e-18 | 121 |
fibroblast | 1.51e-15 | 76 |
vascular associated smooth muscle cell | 9.65e-15 | 32 |
preadipocyte | 6.08e-07 | 12 |