FFCP PHASE1:Hg19::chr12:54798587..54798607,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3678 | |EntrezGene=3678 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6141 | |HGNC=6141 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-174bp_to_ENST00000551861_5end | |association_with_transcript=-174bp_to_ENST00000551861_5end | ||
|cluster_id=chr12:54798587..54798607,- | |||
|description=CAGE_peak_7_at_ITGA5_5end | |description=CAGE_peak_7_at_ITGA5_5end | ||
|id=chr12:54798587..54798607,- | |id=chr12:54798587..54798607,- | ||
|ontology_enrichment_celltype=CL:0002057!4.51e-17!42;CL:0000860!1.27e-15!45;CL:0002371!3.01e-15!591;CL:0000048!3.10e-15!430;CL:0000723!8.06e-15!436;CL:0000034!1.65e-13!444;CL:0000144!4.27e-13!625;CL:0002194!1.80e-11!63;CL:0000576!1.80e-11!63;CL:0000040!1.80e-11!63;CL:0000559!1.80e-11!63;CL:0002009!1.17e-10!65;CL:0000839!4.60e-10!70;CL:0000557!1.03e-09!71;CL:0000766!3.01e-09!76;CL:0000134!4.79e-09!358;CL:0000222!1.64e-08!119;CL:0000055!1.96e-08!180;CL:0002320!2.00e-08!365;CL:0000219!1.50e-07!390;CL:0000548!1.53e-07!679;CL:0000004!1.53e-07!679;CL:0000255!1.53e-07!679;CL:0000012!3.36e-07!682 | |ontology_enrichment_celltype=CL:0002057!4.51e-17!42;CL:0000860!1.27e-15!45;CL:0002371!3.01e-15!591;CL:0000048!3.10e-15!430;CL:0000723!8.06e-15!436;CL:0000034!1.65e-13!444;CL:0000144!4.27e-13!625;CL:0002194!1.80e-11!63;CL:0000576!1.80e-11!63;CL:0000040!1.80e-11!63;CL:0000559!1.80e-11!63;CL:0002009!1.17e-10!65;CL:0000839!4.60e-10!70;CL:0000557!1.03e-09!71;CL:0000766!3.01e-09!76;CL:0000134!4.79e-09!358;CL:0000222!1.64e-08!119;CL:0000055!1.96e-08!180;CL:0002320!2.00e-08!365;CL:0000219!1.50e-07!390;CL:0000548!1.53e-07!679;CL:0000004!1.53e-07!679;CL:0000255!1.53e-07!679;CL:0000012!3.36e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.14e-43;33!CL:0002057;1.14e-43;33!CL:0000473;2.49e-28;39!CL:0000234;2.49e-28;39!CL:0000576;2.68e-19;48!CL:0000766;5.22e-11;69!CL:1000413;6.56e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.58e-35,42;CL:0002057,1.58e-35,42;CL:0000473,4.11e-30,48;CL:0000234,4.11e-30,48;CL:0002194,1.94e-24,59;CL:0000576,1.94e-24,59;CL:0000040,1.94e-24,59;CL:0000559,1.94e-24,59;CL:0002009,2.13e-23,61;CL:0000839,4.52e-21,66;CL:0000557,1.20e-20,67;CL:0000766,1.04e-18,72;CL:0000763,3.55e-11,108;CL:0000049,3.55e-11,108;CL:0002087,4.14e-09,115;CL:0002031,1.85e-08,120;CL:0000048,1.69e-07,427;CL:0000723,3.35e-07,433;CL:1000413,6.82e-07,9;CL:0000034,8.07e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;5.93e-27;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;1.04e-08;3!DOID:127;1.04e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,6.29e-09,3;DOID:127,6.29e-09,3;DOID:0060072,9.15e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0003081!1.94e-12!216;UBERON:0002204!3.32e-12!167;UBERON:0002371!1.09e-08!80;UBERON:0002384!2.11e-08!375;UBERON:0000926!4.13e-08!448;UBERON:0004120!4.13e-08!448;UBERON:0006603!4.13e-08!448;UBERON:0001474!1.04e-07!86;UBERON:0001981!1.33e-07!60;UBERON:0007500!1.33e-07!60;UBERON:0004537!1.33e-07!60;UBERON:0006965!1.33e-07!60;UBERON:0000055!1.46e-07!69;UBERON:0004765!7.13e-07!101;UBERON:0001434!7.13e-07!101;UBERON:0002049!7.52e-07!79;UBERON:0007798!7.52e-07!79;UBERON:0004872!7.83e-07!84;UBERON:0002405!9.98e-07!115 | |ontology_enrichment_uberon=UBERON:0003081!1.94e-12!216;UBERON:0002204!3.32e-12!167;UBERON:0002371!1.09e-08!80;UBERON:0002384!2.11e-08!375;UBERON:0000926!4.13e-08!448;UBERON:0004120!4.13e-08!448;UBERON:0006603!4.13e-08!448;UBERON:0001474!1.04e-07!86;UBERON:0001981!1.33e-07!60;UBERON:0007500!1.33e-07!60;UBERON:0004537!1.33e-07!60;UBERON:0006965!1.33e-07!60;UBERON:0000055!1.46e-07!69;UBERON:0004765!7.13e-07!101;UBERON:0001434!7.13e-07!101;UBERON:0002049!7.52e-07!79;UBERON:0007798!7.52e-07!79;UBERON:0004872!7.83e-07!84;UBERON:0002405!9.98e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0003915;6.56e-07;9!UBERON:0004700;6.56e-07;9!UBERON:0001917;6.56e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.62e-19,76;UBERON:0001474,3.50e-18,82;UBERON:0002405,2.42e-16,93;UBERON:0004765,7.01e-16,90;UBERON:0000926,1.16e-15,315;UBERON:0004120,1.16e-15,315;UBERON:0006603,1.16e-15,315;UBERON:0003081,2.49e-14,203;UBERON:0001434,1.56e-13,100;UBERON:0002193,5.49e-13,108;UBERON:0002390,7.06e-13,98;UBERON:0003061,7.06e-13,98;UBERON:0002204,1.30e-11,167;UBERON:0003915,6.82e-07,9;UBERON:0004700,6.82e-07,9;UBERON:0001917,6.82e-07,9 | |||
|phase1_expression=0,1.71280419112787,0.563817616383885,0,0,0,2.53299878168311,0,0,0.245733936501509,0,0.436882744260345,0.527533956456907,0,0,0,0.602694528023977,0,0,0.123121058076788,0.408001382488506,0.626909442956176,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0.651032612147555,0,0.32389366601898,0,1.30858414901608,1.13362783106643,1.21292030593908,2.55671940596253,2.05583944010913,3.09706370895104,1.43846196161075,3.07392847834921,2.36482229888585,1.03423704220986,0.645484683583826,1.35426486594342,3.57660445130949,1.91034305040492,1.79778787556068,1.83650335422542,1.92557416245656,1.27867425159808,0.659702600373432,2.59302754908121,0.426224750532694,3.19230162491442,3.40431134814684,1.86846674698672,2.26123798731069,2.60741459210101,1.3031330682307,3.63239701580021,0.736555271975129,2.21523671208619,0,0.212604299965044,0,0.336985893439485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0.144824403882799,0,0.670700859703636,0,0.361439152384566,0,0.434539556882471,1.5905718941022,0.486634870302636,0.0945348171640679,0,0,0,0,0,0,0.174129737299267,0,0.238490624305342,0,0,0.596287222100115,0,0.347140501607594,1.69592382577203,0.419499436209906,2.20094433552054,1.25396979922086,1.03366703667732,0,0,0.402829317109147,0,0.732186172644509,1.10298924103761,3.24056779152704,0.535798369704479,0,0.225222960966644,1.53316637465883,0,0.916008719652036,0,0,0.436094052142534,0.993943903390637,0.25326102332916,0.264818361626438,0.860509862246441,0,0.560677600142307,0,1.2333377420858,0,0.134710672069688,0.326923806226917,0.151357427644931,0,0,0,0.570471821544449,0.597794722207204,0.117434498643765,0,0.421352420106746,0.408308342509787,0.61417158655884,0.103325781175765,0,0.247266929278557,0,0,0.336672227908132,0.375355559615893,0.277064115484183,0,0.612975591598039,0.300476117813194,0.113432183160021,0.717558542755448,0.213557388818567,0.423863802319124,0.900273288253207,0.309157587715317,1.03056216018252,0,0.506328996723799,0.0974370051611986,0.252433774244115,0.368199594569197,0,1.42003837006646,0.503760491138201,0.169560592310488,0.386521706326594,0.545492241181669,0,0,0,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0.217879444092406,0,0,0,0,0.738155454624648,0,0,0,0,0.982827216677626,0,0,0,0,0.109750285408626,0,0,0.0925884451585296,0.325808305310325,0,0,0,0,0.433099343283221,0.925971025153221,1.14152491340759,0,0,0,0.234004265139238,0,0,0.335964256397719,0,0,0,0.383382679165211,0.985326475791887,0.088048434013226,0,0,0,0,0,1.17217447210047,0,0,0,0,0.112131084345361,0.43596006883328,0.1466765716419,0.387815147273333,0,0,0,0,0,0,0.532844358032199,0.142977993658148,0,0,0,0.355391948742546,0,0.301439377059586,0,0.699810938274399,0,0,0,0.239624855491583,1.14861935834114,0,1.30303176000821,1.2328579353023,0.716243852959582,0,0,0,0.256686072559497,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0.415941723061614,0.178428988797162,0.157702415033935,0,0,0,0,0.664225598535437,1.29058417979192,0.0868836144680828,0,0.343143423810856,0,0,0.213455115606889,0,0,0,0.248107807818777,0.306923946576125,0.561320188866147,0.512556597022804,1.02341449813341,1.28683136914886,0,0,0.532685175939381,0.164254312027618,0,0.116210378459959,0,1.20303882181971,0.184161977871793,0.459257792658427,1.27463817604702,0.262248829918848,0,0,0.784349769176855,0,0.105551628892876,1.13733384070897,0.850468526382578,0,3.08454505380579,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,1.6068392984416,0.096670718292122,0.308097234229289,0.921022048356777,0.827019434907183,0.429680979473094,0.725083469571143,0.426133137080504,0.0890320356467374,0.165284915360978,0,0,0.2023155617111,0,2.20368642781448,0.6970372701606,0.616067160352178,0.532306030317022,0,0.74129687641568,0.429374660225974,0,0.632758849437452,0,0.767693373934002,0,0,2.35484592059769,0.539617372749944,0.274537029736055,0.353437207037059,1.01091240786658,1.58510321173008,0,0,0.731140468893853,0,0.136499911407986,0.141405431953713,0,0.551365343546124,0.66343897524122,0,1.15755106853338,0.655894752046633,0,1.239293992399,0.281695602532241,0,0.0982490410131212,0,0,0,0,0,1.04980416073495,0,0,0,0.0941438007767792,0.43050537267123,0,0.443430153536676,0.229723400206959,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0.199579371432817,0,0.211673582723883,0.649243880549111,0,0.228234679033192,0,2.50634477090067,0,0.1605880751037,0.201799707191048,0,0.687010689511529,0,0.447352215784832,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17727711363265,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,1.91400695839152,0.732780747214898,3.19820865611181,0,0.31396051279005,0,0,0.19606253431774,0.167821586975843,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0.330991955875499,0,0,0,0,0,0,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| ||
|short_description=p7@ITGA5 | |short_description=p7@ITGA5 | ||
}} | }} |
Latest revision as of 06:21, 19 September 2015
Short description: | p7@ITGA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_ITGA5_5end |
Coexpression cluster: | NA |
Association with transcript: | -174bp_to_ENST00000551861_5end |
EntrezGene: | ITGA5 |
HGNC: | 6141 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.58e-35 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.58e-35 | 42 |
defensive cell | 4.11e-30 | 48 |
phagocyte | 4.11e-30 | 48 |
monopoietic cell | 1.94e-24 | 59 |
monocyte | 1.94e-24 | 59 |
monoblast | 1.94e-24 | 59 |
promonocyte | 1.94e-24 | 59 |
macrophage dendritic cell progenitor | 2.13e-23 | 61 |
myeloid lineage restricted progenitor cell | 4.52e-21 | 66 |
granulocyte monocyte progenitor cell | 1.20e-20 | 67 |
myeloid leukocyte | 1.04e-18 | 72 |
myeloid cell | 3.55e-11 | 108 |
common myeloid progenitor | 3.55e-11 | 108 |
nongranular leukocyte | 4.14e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 1.85e-08 | 120 |
multi fate stem cell | 1.69e-07 | 427 |
somatic stem cell | 3.35e-07 | 433 |
endothelial cell of artery | 6.82e-07 | 9 |
stem cell | 8.07e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.62e-19 | 76 |
bone element | 3.50e-18 | 82 |
immune system | 2.42e-16 | 93 |
skeletal element | 7.01e-16 | 90 |
mesoderm | 1.16e-15 | 315 |
mesoderm-derived structure | 1.16e-15 | 315 |
presumptive mesoderm | 1.16e-15 | 315 |
lateral plate mesoderm | 2.49e-14 | 203 |
skeletal system | 1.56e-13 | 100 |
hemolymphoid system | 5.49e-13 | 108 |
hematopoietic system | 7.06e-13 | 98 |
blood island | 7.06e-13 | 98 |
musculoskeletal system | 1.30e-11 | 167 |
endothelial tube | 6.82e-07 | 9 |
arterial system endothelium | 6.82e-07 | 9 |
endothelium of artery | 6.82e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 6.29e-09 | 3 |
leiomyoma | 6.29e-09 | 3 |
benign neoplasm | 9.15e-07 | 4 |