FFCP PHASE1:Hg19::chr17:26988897..26988908,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:26988897..26988908,- to FFCP PHASE1:Hg19::chr17:26988897..26988908,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6388 | |EntrezGene=6388 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10675 | |HGNC=10675 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=24bp_to_uc002hbw.2,uc010crs.1_5end | |||
|cluster_id=chr17:26988897..26988908,- | |||
|description=CAGE_peak_3_at_SDF2_5end | |||
|id=chr17:26988897..26988908,- | |||
|ontology_enrichment_celltype=CL:0000003!1.50e-17!722;CL:0002057!2.57e-15!42;CL:0000144!4.02e-15!625;CL:0000548!2.29e-14!679;CL:0000004!2.29e-14!679;CL:0000255!2.29e-14!679;CL:0000012!3.52e-14!682;CL:0002371!4.45e-14!591;CL:0000860!1.25e-13!45;CL:0000048!1.27e-11!430;CL:0000723!1.31e-11!436;CL:0000766!4.11e-11!76;CL:0000034!1.12e-10!444;CL:0000359!7.25e-09!32;CL:0002194!1.24e-08!63;CL:0000576!1.24e-08!63;CL:0000040!1.24e-08!63;CL:0000559!1.24e-08!63;CL:0002009!1.33e-08!65;CL:0000063!1.76e-08!578;CL:0000192!4.77e-08!42;CL:0000514!4.77e-08!42;CL:0000839!6.20e-08!70;CL:0000680!1.13e-07!57;CL:0000056!1.13e-07!57;CL:0000355!1.13e-07!57;CL:0000557!1.17e-07!71;CL:0000222!5.75e-07!119;CL:0000187!6.63e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.73e-18;33!CL:0002057;1.73e-18;33!CL:0000473;1.41e-12;39!CL:0000234;1.41e-12;39!CL:0000359;2.20e-10;32!CL:0000576;1.39e-09;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.64e-17,42;CL:0002057,1.64e-17,42;CL:0000473,1.08e-14,48;CL:0000234,1.08e-14,48;CL:0000766,1.12e-13,72;CL:0000048,7.09e-13,427;CL:0000723,9.12e-13,433;CL:0000034,4.83e-12,441;CL:0002194,2.55e-11,59;CL:0000576,2.55e-11,59;CL:0000040,2.55e-11,59;CL:0000559,2.55e-11,59;CL:0000359,4.71e-11,32;CL:0002009,5.03e-11,61;CL:0000557,1.78e-09,67;CL:0000839,2.70e-09,66;CL:0000192,1.57e-08,43;CL:0000514,1.57e-08,43;CL:0000680,4.86e-08,58;CL:0000056,4.86e-08,58;CL:0000355,4.86e-08,58;CL:0000222,2.17e-07,121;CL:0000187,3.57e-07,55 | |||
|ontology_enrichment_development_v019=CL:0002057;4.29e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.64e-13!167;UBERON:0003081!3.52e-12!216;UBERON:0000926!1.65e-09!448;UBERON:0004120!1.65e-09!448;UBERON:0006603!1.65e-09!448;UBERON:0002390!3.17e-08!102;UBERON:0003061!3.17e-08!102;UBERON:0001637!7.72e-08!42;UBERON:0003509!7.72e-08!42;UBERON:0004572!7.72e-08!42;UBERON:0002371!8.37e-08!80;UBERON:0004573!2.20e-07!33;UBERON:0004571!2.20e-07!33;UBERON:0004765!2.62e-07!101;UBERON:0001434!2.62e-07!101;UBERON:0002193!4.17e-07!112;UBERON:0001474!7.18e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.00e-08;33!UBERON:0004571;2.00e-08;33!UBERON:0001637;1.36e-07;42!UBERON:0003509;1.36e-07;42!UBERON:0004572;1.36e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.10e-16,203;UBERON:0000926,2.33e-15,315;UBERON:0004120,2.33e-15,315;UBERON:0006603,2.33e-15,315;UBERON:0002204,3.68e-15,167;UBERON:0004765,1.45e-10,90;UBERON:0001637,1.36e-09,42;UBERON:0003509,1.36e-09,42;UBERON:0004572,1.36e-09,42;UBERON:0004535,1.78e-09,109;UBERON:0002371,1.91e-09,76;UBERON:0002390,2.47e-09,98;UBERON:0003061,2.47e-09,98;UBERON:0004573,3.94e-09,33;UBERON:0004571,3.94e-09,33;UBERON:0001009,1.29e-08,112;UBERON:0001434,1.30e-08,100;UBERON:0002193,1.62e-08,108;UBERON:0001474,2.17e-08,82;UBERON:0002049,7.37e-08,78;UBERON:0007798,7.37e-08,78;UBERON:0004872,1.74e-07,83;UBERON:0007500,3.63e-07,59;UBERON:0001981,3.63e-07,59;UBERON:0004537,3.63e-07,59;UBERON:0006965,3.63e-07,59;UBERON:0002405,5.64e-07,93 | |||
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| ||
|short_description=p3@SDF2 | |||
}} | }} |
Latest revision as of 06:44, 19 September 2015
Short description: | p3@SDF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SDF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 24bp_to_uc002hbw.2, uc010crs.1_5end |
EntrezGene: | SDF2 |
HGNC: | 10675 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.64e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.64e-17 | 42 |
defensive cell | 1.08e-14 | 48 |
phagocyte | 1.08e-14 | 48 |
myeloid leukocyte | 1.12e-13 | 72 |
multi fate stem cell | 7.09e-13 | 427 |
somatic stem cell | 9.12e-13 | 433 |
stem cell | 4.83e-12 | 441 |
monopoietic cell | 2.55e-11 | 59 |
monocyte | 2.55e-11 | 59 |
monoblast | 2.55e-11 | 59 |
promonocyte | 2.55e-11 | 59 |
vascular associated smooth muscle cell | 4.71e-11 | 32 |
macrophage dendritic cell progenitor | 5.03e-11 | 61 |
granulocyte monocyte progenitor cell | 1.78e-09 | 67 |
myeloid lineage restricted progenitor cell | 2.70e-09 | 66 |
smooth muscle cell | 1.57e-08 | 43 |
smooth muscle myoblast | 1.57e-08 | 43 |
muscle precursor cell | 4.86e-08 | 58 |
myoblast | 4.86e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.86e-08 | 58 |
mesodermal cell | 2.17e-07 | 121 |
muscle cell | 3.57e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.10e-16 | 203 |
mesoderm | 2.33e-15 | 315 |
mesoderm-derived structure | 2.33e-15 | 315 |
presumptive mesoderm | 2.33e-15 | 315 |
musculoskeletal system | 3.68e-15 | 167 |
skeletal element | 1.45e-10 | 90 |
artery | 1.36e-09 | 42 |
arterial blood vessel | 1.36e-09 | 42 |
arterial system | 1.36e-09 | 42 |
cardiovascular system | 1.78e-09 | 109 |
bone marrow | 1.91e-09 | 76 |
hematopoietic system | 2.47e-09 | 98 |
blood island | 2.47e-09 | 98 |
systemic artery | 3.94e-09 | 33 |
systemic arterial system | 3.94e-09 | 33 |
circulatory system | 1.29e-08 | 112 |
skeletal system | 1.30e-08 | 100 |
hemolymphoid system | 1.62e-08 | 108 |
bone element | 2.17e-08 | 82 |
vasculature | 7.37e-08 | 78 |
vascular system | 7.37e-08 | 78 |
splanchnic layer of lateral plate mesoderm | 1.74e-07 | 83 |
epithelial tube open at both ends | 3.63e-07 | 59 |
blood vessel | 3.63e-07 | 59 |
blood vasculature | 3.63e-07 | 59 |
vascular cord | 3.63e-07 | 59 |
immune system | 5.64e-07 | 93 |