FFCP PHASE1:Hg19::chr11:6502534..6502579,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:6502534..6502579,- to FFCP PHASE1:Hg19::chr11:6502534..6502579,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23647 | |EntrezGene=23647 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17160 | |HGNC=17160 | ||
|TSSclassifier=strong | |||
|UniProt=P53365,B4E306,E9PRV8,E9PPY7 | |UniProt=P53365,B4E306,E9PRV8,E9PPY7 | ||
|association_with_transcript=0bp_to_ENST00000254584,ENST00000445086,ENST00000525235,ENST00000525329,ENST00000528892,ENST00000529847,ENST00000531037_5end | |||
|cluster_id=chr11:6502534..6502579,- | |||
|description=CAGE_peak_1_at_ARFIP2_5end | |||
|id=chr11:6502534..6502579,- | |||
|ontology_enrichment_celltype=CL:0000220!8.89e-14!246;CL:0002321!4.59e-13!248;CL:0000055!1.15e-12!180;CL:0000183!2.65e-11!59;CL:0000066!3.64e-11!254;CL:0000192!1.83e-10!42;CL:0000514!1.83e-10!42;CL:0000680!5.99e-10!57;CL:0000056!5.99e-10!57;CL:0000355!5.99e-10!57;CL:0000187!9.21e-10!54;CL:0000359!8.17e-09!32;CL:0000222!4.79e-08!119;CL:0000393!5.26e-08!60;CL:0000211!5.26e-08!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.45e-08;32!CL:0000192;4.41e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.07e-13,250;CL:0000066,4.55e-11,253;CL:0000192,1.63e-10,43;CL:0000514,1.63e-10,43;CL:0000680,5.07e-10,58;CL:0000056,5.07e-10,58;CL:0000355,5.07e-10,58;CL:0000187,7.84e-10,55;CL:0000359,8.17e-09,32;CL:0000222,3.48e-08,121;CL:0000393,4.38e-08,61;CL:0000211,4.38e-08,61 | |||
|ontology_enrichment_development_v019=CL:0000514;4.41e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!3.50e-17!347;UBERON:0000475!1.47e-15!365;UBERON:0003104!1.71e-13!238;UBERON:0009142!1.71e-13!238;UBERON:0000119!1.21e-12!312;UBERON:0000483!1.63e-12!309;UBERON:0002100!2.85e-11!216;UBERON:0005256!1.76e-10!143;UBERON:0000486!1.01e-09!82;UBERON:0000914!1.21e-09!83;UBERON:0002329!1.21e-09!83;UBERON:0003077!1.21e-09!83;UBERON:0003059!1.21e-09!83;UBERON:0007282!1.21e-09!83;UBERON:0009618!1.21e-09!83;UBERON:0007285!1.21e-09!83;UBERON:0004290!3.49e-09!70;UBERON:0000477!9.82e-09!286;UBERON:0001637!3.73e-08!42;UBERON:0003509!3.73e-08!42;UBERON:0004572!3.73e-08!42;UBERON:0001048!4.82e-08!168;UBERON:0001134!5.98e-08!61;UBERON:0002036!5.98e-08!61;UBERON:0003082!5.98e-08!61;UBERON:0000490!7.62e-08!138;UBERON:0002385!1.50e-07!63;UBERON:0001015!1.50e-07!63;UBERON:0000383!1.50e-07!63;UBERON:0003914!1.62e-07!118;UBERON:0004573!5.09e-07!33;UBERON:0004571!5.09e-07!33;UBERON:0004119!5.74e-07!169;UBERON:0000925!5.74e-07!169;UBERON:0006595!5.74e-07!169;UBERON:0000064!6.28e-07!219;UBERON:0002049!7.58e-07!79;UBERON:0007798!7.58e-07!79 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.47e-13,309;UBERON:0000483,3.35e-13,306;UBERON:0003104,3.29e-12,160;UBERON:0009142,3.29e-12,160;UBERON:0007503,7.65e-11,78;UBERON:0002100,1.91e-10,199;UBERON:0000486,8.29e-10,83;UBERON:0007524,2.00e-09,73;UBERON:0005256,2.08e-09,122;UBERON:0003077,2.52e-09,72;UBERON:0007285,2.52e-09,72;UBERON:0002329,2.89e-09,71;UBERON:0003059,2.89e-09,71;UBERON:0007282,2.89e-09,71;UBERON:0004290,2.89e-09,71;UBERON:0009618,2.89e-09,71;UBERON:0000490,4.51e-09,148;UBERON:0001048,5.46e-09,160;UBERON:0001637,3.73e-08,42;UBERON:0003509,3.73e-08,42;UBERON:0004572,3.73e-08,42;UBERON:0001134,4.97e-08,62;UBERON:0002036,4.97e-08,62;UBERON:0003082,4.97e-08,62;UBERON:0002385,1.24e-07,64;UBERON:0001015,1.24e-07,64;UBERON:0000383,1.24e-07,64;UBERON:0003914,1.96e-07,117;UBERON:0004119,2.46e-07,160;UBERON:0000925,2.46e-07,160;UBERON:0006595,2.46e-07,160;UBERON:0004573,5.09e-07,33;UBERON:0004571,5.09e-07,33;UBERON:0002049,6.52e-07,78;UBERON:0007798,6.52e-07,78 | |||
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| ||
|short_description=p1@ARFIP2 | |||
}} | }} |
Latest revision as of 07:02, 19 September 2015
Short description: | p1@ARFIP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARFIP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000254584, ENST00000445086, ENST00000525235, ENST00000525329, ENST00000528892, ENST00000529847, ENST00000531037_5end |
EntrezGene: | ARFIP2 |
HGNC: | 17160 |
UniProt: | P53365B4E306E9PRV8E9PPY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.07e-13 | 250 |
epithelial cell | 4.55e-11 | 253 |
smooth muscle cell | 1.63e-10 | 43 |
smooth muscle myoblast | 1.63e-10 | 43 |
muscle precursor cell | 5.07e-10 | 58 |
myoblast | 5.07e-10 | 58 |
multi-potent skeletal muscle stem cell | 5.07e-10 | 58 |
muscle cell | 7.84e-10 | 55 |
vascular associated smooth muscle cell | 8.17e-09 | 32 |
mesodermal cell | 3.48e-08 | 121 |
electrically responsive cell | 4.38e-08 | 61 |
electrically active cell | 4.38e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
cell layer | 2.47e-13 | 309 |
epithelium | 3.35e-13 | 306 |
mesenchyme | 3.29e-12 | 160 |
entire embryonic mesenchyme | 3.29e-12 | 160 |
epithelial vesicle | 7.65e-11 | 78 |
trunk | 1.91e-10 | 199 |
multilaminar epithelium | 8.29e-10 | 83 |
dense mesenchyme tissue | 2.00e-09 | 73 |
trunk mesenchyme | 2.08e-09 | 122 |
paraxial mesoderm | 2.52e-09 | 72 |
presumptive paraxial mesoderm | 2.52e-09 | 72 |
somite | 2.89e-09 | 71 |
presomitic mesoderm | 2.89e-09 | 71 |
presumptive segmental plate | 2.89e-09 | 71 |
dermomyotome | 2.89e-09 | 71 |
trunk paraxial mesoderm | 2.89e-09 | 71 |
unilaminar epithelium | 4.51e-09 | 148 |
primordium | 5.46e-09 | 160 |
artery | 3.73e-08 | 42 |
arterial blood vessel | 3.73e-08 | 42 |
arterial system | 3.73e-08 | 42 |
skeletal muscle tissue | 4.97e-08 | 62 |
striated muscle tissue | 4.97e-08 | 62 |
myotome | 4.97e-08 | 62 |
muscle tissue | 1.24e-07 | 64 |
musculature | 1.24e-07 | 64 |
musculature of body | 1.24e-07 | 64 |
epithelial tube | 1.96e-07 | 117 |
endoderm-derived structure | 2.46e-07 | 160 |
endoderm | 2.46e-07 | 160 |
presumptive endoderm | 2.46e-07 | 160 |
systemic artery | 5.09e-07 | 33 |
systemic arterial system | 5.09e-07 | 33 |
vasculature | 6.52e-07 | 78 |
vascular system | 6.52e-07 | 78 |