FFCP PHASE1:Hg19::chr12:56510436..56510463,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:56510436..56510463,+ to FFCP PHASE1:Hg19::chr12:56510436..56510463,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6171 | |EntrezGene=6171 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10354 | |HGNC=10354 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=19bp_to_ENST00000358888_5end | |||
|cluster_id=chr12:56510436..56510463,+ | |||
|description=CAGE_peak_3_at_RPL41_5end | |||
|id=chr12:56510436..56510463,+ | |||
|ontology_enrichment_celltype=CL:0000393!1.82e-07!60;CL:0000211!1.82e-07!60 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,5.31e-07,61;CL:0000211,5.31e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.16e-14!57;UBERON:0005068!1.16e-14!57;UBERON:0006241!1.16e-14!57;UBERON:0007135!1.16e-14!57;UBERON:0002020!1.29e-14!34;UBERON:0003528!1.29e-14!34;UBERON:0002780!1.70e-14!41;UBERON:0001890!1.70e-14!41;UBERON:0006240!1.70e-14!41;UBERON:0001869!3.74e-14!32;UBERON:0003080!2.18e-13!42;UBERON:0001017!2.39e-13!82;UBERON:0001893!3.94e-13!34;UBERON:0002616!4.69e-13!59;UBERON:0002791!7.77e-13!33;UBERON:0005743!4.81e-12!86;UBERON:0000956!6.86e-12!25;UBERON:0000203!6.86e-12!25;UBERON:0000955!2.25e-11!69;UBERON:0006238!2.25e-11!69;UBERON:0002619!2.95e-11!22;UBERON:0000073!9.21e-11!94;UBERON:0001016!9.21e-11!94;UBERON:0002346!2.91e-10!90;UBERON:0001950!2.97e-10!20;UBERON:0003075!9.13e-10!86;UBERON:0007284!9.13e-10!86;UBERON:0000025!9.61e-09!194;UBERON:0003056!4.14e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.79e-13;32!UBERON:0003528;5.73e-13;34!UBERON:0002020;5.73e-13;34!UBERON:0002791;7.94e-13;32!UBERON:0000956;5.98e-12;25!UBERON:0000203;5.98e-12;25!UBERON:0001893;1.30e-11;34!UBERON:0002619;2.93e-11;22!UBERON:0002780;1.71e-10;41!UBERON:0001890;1.71e-10;41!UBERON:0001950;3.00e-10;20!UBERON:0000073;1.80e-08;53!UBERON:0002616;1.80e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.23e-15,56;UBERON:0005068,1.23e-15,56;UBERON:0006241,1.23e-15,56;UBERON:0007135,1.23e-15,56;UBERON:0000073,9.12e-15,53;UBERON:0002616,9.12e-15,53;UBERON:0003528,1.29e-14,34;UBERON:0002020,1.29e-14,34;UBERON:0002780,1.70e-14,41;UBERON:0001890,1.70e-14,41;UBERON:0003080,1.70e-14,41;UBERON:0006240,1.70e-14,41;UBERON:0001869,3.74e-14,32;UBERON:0001017,4.41e-14,81;UBERON:0002791,7.61e-14,32;UBERON:0001893,3.94e-13,34;UBERON:0001016,1.60e-12,89;UBERON:0000955,4.19e-12,68;UBERON:0006238,4.19e-12,68;UBERON:0000956,6.86e-12,25;UBERON:0000203,6.86e-12,25;UBERON:0002346,1.27e-11,86;UBERON:0002619,2.95e-11,22;UBERON:0003075,4.04e-11,82;UBERON:0007284,4.04e-11,82;UBERON:0010314,1.38e-10,132;UBERON:0001950,2.97e-10,20;UBERON:0000025,2.11e-09,192;UBERON:0003056,7.30e-09,61;UBERON:0010371,2.17e-07,104 | |||
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| ||
|short_description=p3@RPL41 | |||
}} | }} |
Latest revision as of 09:46, 19 September 2015
Short description: | p3@RPL41 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RPL41_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000358888_5end |
EntrezGene: | RPL41 |
HGNC: | 10354 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 5.31e-07 | 61 |
electrically active cell | 5.31e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.23e-15 | 56 |
neural rod | 1.23e-15 | 56 |
future spinal cord | 1.23e-15 | 56 |
neural keel | 1.23e-15 | 56 |
regional part of nervous system | 9.12e-15 | 53 |
regional part of brain | 9.12e-15 | 53 |
brain grey matter | 1.29e-14 | 34 |
gray matter | 1.29e-14 | 34 |
regional part of forebrain | 1.70e-14 | 41 |
forebrain | 1.70e-14 | 41 |
anterior neural tube | 1.70e-14 | 41 |
future forebrain | 1.70e-14 | 41 |
cerebral hemisphere | 3.74e-14 | 32 |
central nervous system | 4.41e-14 | 81 |
regional part of telencephalon | 7.61e-14 | 32 |
telencephalon | 3.94e-13 | 34 |
nervous system | 1.60e-12 | 89 |
brain | 4.19e-12 | 68 |
future brain | 4.19e-12 | 68 |
cerebral cortex | 6.86e-12 | 25 |
pallium | 6.86e-12 | 25 |
neurectoderm | 1.27e-11 | 86 |
regional part of cerebral cortex | 2.95e-11 | 22 |
neural plate | 4.04e-11 | 82 |
presumptive neural plate | 4.04e-11 | 82 |
structure with developmental contribution from neural crest | 1.38e-10 | 132 |
neocortex | 2.97e-10 | 20 |
tube | 2.11e-09 | 192 |
pre-chordal neural plate | 7.30e-09 | 61 |
ecto-epithelium | 2.17e-07 | 104 |