FFCP PHASE1:Hg19::chr3:108541665..108541680,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:108541665..108541680,+
|short_description=p3@TRAT1
|description=CAGE_peak_3_at_TRAT1_5end
|association_with_transcript=-25bp_to_ENST00000478830_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50852 | |EntrezGene=50852 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30698 | |HGNC=30698 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-25bp_to_ENST00000478830_5end | |||
|cluster_id=chr3:108541665..108541680,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_TRAT1_5end | |||
|id=chr3:108541665..108541680,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.20e-35!25;CL:0000827!1.20e-35!25;CL:0000791!1.19e-33!18;CL:0000789!1.19e-33!18;CL:0002420!1.19e-33!18;CL:0002419!1.19e-33!18;CL:0000790!1.19e-33!18;CL:0000838!5.69e-24!52;CL:0000625!1.26e-23!11;CL:0000542!2.30e-23!53;CL:0000051!2.30e-23!53;CL:0000738!2.48e-19!140;CL:0002087!1.37e-17!119;CL:0002031!3.90e-16!124;CL:0000037!4.22e-16!172;CL:0000566!4.22e-16!172;CL:0000988!1.62e-14!182;CL:0000624!6.44e-14!6;CL:0002032!1.77e-13!165;CL:0000837!1.77e-13!165;CL:0000898!6.62e-08!3;CL:0000842!2.60e-07!3;CL:0000623!3.66e-07!3;CL:0000825!3.66e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.31e-48;18!CL:0000789;2.31e-48;18!CL:0002419;2.31e-48;18!CL:0000084;4.42e-48;25!CL:0000625;1.90e-31;11!CL:0000624;1.15e-21;6!CL:0000542;2.85e-14;53!CL:0000898;6.62e-12;3!CL:0000226;6.42e-11;3!CL:0000842;6.42e-11;3!CL:0000623;1.47e-10;3!CL:0000815;2.29e-08;2!CL:0000792;2.29e-08;2!CL:0002677;2.29e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.94e-48,18;CL:0000789,2.94e-48,18;CL:0002420,2.94e-48,18;CL:0002419,2.94e-48,18;CL:0000790,2.94e-48,18;CL:0000084,5.89e-48,25;CL:0000827,5.89e-48,25;CL:0000625,2.31e-31,11;CL:0000838,6.62e-28,52;CL:0000542,2.85e-27,53;CL:0000051,2.85e-27,53;CL:0000624,1.21e-21,6;CL:0002087,3.44e-14,115;CL:0000738,3.85e-12,136;CL:0000898,7.13e-12,3;CL:0000226,6.53e-11,3;CL:0000842,6.53e-11,3;CL:0000623,1.14e-10,3;CL:0000825,1.14e-10,3;CL:0002031,6.56e-10,120;CL:0000037,1.67e-09,168;CL:0000988,1.06e-08,177;CL:0000815,2.51e-08,2;CL:0000792,2.51e-08,2;CL:0002677,2.51e-08,2;CL:0002032,8.16e-07,161;CL:0000837,8.16e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;2.31e-48;18!CL:0000051;2.85e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!7.17e-16!15;UBERON:0000179!7.17e-16!15;UBERON:0000463!7.17e-16!15;UBERON:0002193!1.76e-08!112;UBERON:0002390!2.34e-08!102;UBERON:0003061!2.34e-08!102;UBERON:0004177!7.06e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.58e-26;15!UBERON:0000179;9.58e-26;15!UBERON:0000463;9.58e-26;15!UBERON:0002390;1.38e-14;32!UBERON:0002370;7.92e-09;2!UBERON:0005058;7.92e-09;2!UBERON:0009113;7.92e-09;2!UBERON:0002193;1.97e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.03e-25,15;UBERON:0000179,1.03e-25,15;UBERON:0000463,1.03e-25,15;UBERON:0002370,2.12e-09,4;UBERON:0005058,2.12e-09,4;UBERON:0009113,2.12e-09,4;UBERON:0003295,2.12e-09,4;UBERON:0005562,2.12e-09,4 | |||
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| ||
|short_description=p3@TRAT1 | |||
}} | }} |
Latest revision as of 11:35, 19 September 2015
Short description: | p3@TRAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRAT1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -25bp_to_ENST00000478830_5end |
EntrezGene: | TRAT1 |
HGNC: | 30698 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.94e-48 | 18 |
alpha-beta T cell | 2.94e-48 | 18 |
immature T cell | 2.94e-48 | 18 |
mature T cell | 2.94e-48 | 18 |
immature alpha-beta T cell | 2.94e-48 | 18 |
T cell | 5.89e-48 | 25 |
pro-T cell | 5.89e-48 | 25 |
CD8-positive, alpha-beta T cell | 2.31e-31 | 11 |
lymphoid lineage restricted progenitor cell | 6.62e-28 | 52 |
lymphocyte | 2.85e-27 | 53 |
common lymphoid progenitor | 2.85e-27 | 53 |
CD4-positive, alpha-beta T cell | 1.21e-21 | 6 |
nongranular leukocyte | 3.44e-14 | 115 |
leukocyte | 3.85e-12 | 136 |
naive T cell | 7.13e-12 | 3 |
single nucleate cell | 6.53e-11 | 3 |
mononuclear cell | 6.53e-11 | 3 |
natural killer cell | 1.14e-10 | 3 |
pro-NK cell | 1.14e-10 | 3 |
hematopoietic lineage restricted progenitor cell | 6.56e-10 | 120 |
hematopoietic stem cell | 1.67e-09 | 168 |
hematopoietic cell | 1.06e-08 | 177 |
regulatory T cell | 2.51e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.51e-08 | 2 |
naive regulatory T cell | 2.51e-08 | 2 |
hematopoietic oligopotent progenitor cell | 8.16e-07 | 161 |
hematopoietic multipotent progenitor cell | 8.16e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 1.03e-25 | 15 |
haemolymphatic fluid | 1.03e-25 | 15 |
organism substance | 1.03e-25 | 15 |
thymus | 2.12e-09 | 4 |
hemolymphoid system gland | 2.12e-09 | 4 |
thymic region | 2.12e-09 | 4 |
pharyngeal gland | 2.12e-09 | 4 |
thymus primordium | 2.12e-09 | 4 |