FFCP PHASE1:Hg19::chr9:101984540..101984572,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10952 | |EntrezGene=10952 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16993 | |HGNC=16993 | ||
|TSSclassifier=strong | |||
|UniProt=P60468 | |UniProt=P60468 | ||
|association_with_transcript=0bp_to_NM_006808,uc004azh.2_5end | |association_with_transcript=0bp_to_NM_006808,uc004azh.2_5end | ||
|cluster_id=chr9:101984540..101984572,+ | |||
|description=CAGE_peak_1_at_SEC61B_5end | |description=CAGE_peak_1_at_SEC61B_5end | ||
|id=chr9:101984540..101984572,+ | |id=chr9:101984540..101984572,+ | ||
|ontology_enrichment_celltype=CL:0000144!1.32e-43!625;CL:0000012!5.73e-42!682;CL:0002371!6.91e-42!591;CL:0000548!2.24e-40!679;CL:0000004!2.24e-40!679;CL:0000255!2.24e-40!679;CL:0000003!8.88e-32!722;CL:0000034!1.25e-22!444;CL:0000048!1.26e-22!430;CL:0000723!2.09e-22!436;CL:0000222!1.81e-18!119;CL:0000183!2.13e-18!59;CL:0000055!5.39e-17!180;CL:0000680!1.53e-16!57;CL:0000056!1.53e-16!57;CL:0000355!1.53e-16!57;CL:0000192!2.80e-16!42;CL:0000514!2.80e-16!42;CL:0000220!5.09e-16!246;CL:0000187!6.65e-16!54;CL:0000393!6.97e-16!60;CL:0000211!6.97e-16!60;CL:0002321!1.55e-15!248;CL:0000063!1.61e-14!578;CL:0000359!3.51e-12!32;CL:0002320!8.91e-10!365;CL:0000134!1.02e-08!358;CL:0000219!8.45e-07!390 | |ontology_enrichment_celltype=CL:0000144!1.32e-43!625;CL:0000012!5.73e-42!682;CL:0002371!6.91e-42!591;CL:0000548!2.24e-40!679;CL:0000004!2.24e-40!679;CL:0000255!2.24e-40!679;CL:0000003!8.88e-32!722;CL:0000034!1.25e-22!444;CL:0000048!1.26e-22!430;CL:0000723!2.09e-22!436;CL:0000222!1.81e-18!119;CL:0000183!2.13e-18!59;CL:0000055!5.39e-17!180;CL:0000680!1.53e-16!57;CL:0000056!1.53e-16!57;CL:0000355!1.53e-16!57;CL:0000192!2.80e-16!42;CL:0000514!2.80e-16!42;CL:0000220!5.09e-16!246;CL:0000187!6.65e-16!54;CL:0000393!6.97e-16!60;CL:0000211!6.97e-16!60;CL:0002321!1.55e-15!248;CL:0000063!1.61e-14!578;CL:0000359!3.51e-12!32;CL:0002320!8.91e-10!365;CL:0000134!1.02e-08!358;CL:0000219!8.45e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.93e-11;32!CL:0000192;4.85e-11;43!CL:0000187;3.48e-09;55!CL:0000393;1.06e-07;61!CL:0000211;1.06e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,7.37e-23,427;CL:0000034,7.45e-23,441;CL:0000723,1.23e-22,433;CL:0000222,7.92e-19,121;CL:0000680,2.14e-16,58;CL:0000056,2.14e-16,58;CL:0000355,2.14e-16,58;CL:0000192,4.60e-16,43;CL:0000514,4.60e-16,43;CL:0002321,6.98e-16,250;CL:0000393,9.34e-16,61;CL:0000211,9.34e-16,61;CL:0000187,9.36e-16,55;CL:0000359,3.51e-12,32;CL:0002320,6.51e-10,361;CL:0000134,7.59e-09,354;CL:0000219,6.74e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;4.85e-11;43!CL:0000355;7.41e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.18e-16!143;UBERON:0000486!1.38e-15!82;UBERON:0000914!3.92e-15!83;UBERON:0002329!3.92e-15!83;UBERON:0003077!3.92e-15!83;UBERON:0003059!3.92e-15!83;UBERON:0007282!3.92e-15!83;UBERON:0009618!3.92e-15!83;UBERON:0007285!3.92e-15!83;UBERON:0004290!7.77e-15!70;UBERON:0001134!2.15e-13!61;UBERON:0002036!2.15e-13!61;UBERON:0003082!2.15e-13!61;UBERON:0000490!8.75e-13!138;UBERON:0003914!1.61e-12!118;UBERON:0002385!4.53e-12!63;UBERON:0001015!4.53e-12!63;UBERON:0000383!4.53e-12!63;UBERON:0002100!7.74e-11!216;UBERON:0000926!7.86e-11!448;UBERON:0004120!7.86e-11!448;UBERON:0006603!7.86e-11!448;UBERON:0002049!1.40e-10!79;UBERON:0007798!1.40e-10!79;UBERON:0001637!4.40e-10!42;UBERON:0003509!4.40e-10!42;UBERON:0004572!4.40e-10!42;UBERON:0000055!2.01e-09!69;UBERON:0002204!2.10e-09!167;UBERON:0003104!1.43e-08!238;UBERON:0009142!1.43e-08!238;UBERON:0002384!1.50e-08!375;UBERON:0004872!1.90e-08!84;UBERON:0001981!3.82e-08!60;UBERON:0007500!3.82e-08!60;UBERON:0004537!3.82e-08!60;UBERON:0006965!3.82e-08!60;UBERON:0003081!1.19e-07!216;UBERON:0004573!1.23e-07!33;UBERON:0004571!1.23e-07!33;UBERON:0004535!8.08e-07!110 | |ontology_enrichment_uberon=UBERON:0005256!2.18e-16!143;UBERON:0000486!1.38e-15!82;UBERON:0000914!3.92e-15!83;UBERON:0002329!3.92e-15!83;UBERON:0003077!3.92e-15!83;UBERON:0003059!3.92e-15!83;UBERON:0007282!3.92e-15!83;UBERON:0009618!3.92e-15!83;UBERON:0007285!3.92e-15!83;UBERON:0004290!7.77e-15!70;UBERON:0001134!2.15e-13!61;UBERON:0002036!2.15e-13!61;UBERON:0003082!2.15e-13!61;UBERON:0000490!8.75e-13!138;UBERON:0003914!1.61e-12!118;UBERON:0002385!4.53e-12!63;UBERON:0001015!4.53e-12!63;UBERON:0000383!4.53e-12!63;UBERON:0002100!7.74e-11!216;UBERON:0000926!7.86e-11!448;UBERON:0004120!7.86e-11!448;UBERON:0006603!7.86e-11!448;UBERON:0002049!1.40e-10!79;UBERON:0007798!1.40e-10!79;UBERON:0001637!4.40e-10!42;UBERON:0003509!4.40e-10!42;UBERON:0004572!4.40e-10!42;UBERON:0000055!2.01e-09!69;UBERON:0002204!2.10e-09!167;UBERON:0003104!1.43e-08!238;UBERON:0009142!1.43e-08!238;UBERON:0002384!1.50e-08!375;UBERON:0004872!1.90e-08!84;UBERON:0001981!3.82e-08!60;UBERON:0007500!3.82e-08!60;UBERON:0004537!3.82e-08!60;UBERON:0006965!3.82e-08!60;UBERON:0003081!1.19e-07!216;UBERON:0004573!1.23e-07!33;UBERON:0004571!1.23e-07!33;UBERON:0004535!8.08e-07!110 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.33e-07;42!UBERON:0003509;7.33e-07;42!UBERON:0004572;7.33e-07;42!UBERON:0004573;7.70e-07;33!UBERON:0004571;7.70e-07;33 | |||
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| ||
|short_description=p1@SEC61B | |short_description=p1@SEC61B | ||
}} | }} |
Latest revision as of 19:59, 19 September 2015
Short description: | p1@SEC61B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEC61B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_006808, uc004azh.2_5end |
EntrezGene: | SEC61B |
HGNC: | 16993 |
UniProt: | P60468 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 7.37e-23 | 427 |
stem cell | 7.45e-23 | 441 |
somatic stem cell | 1.23e-22 | 433 |
mesodermal cell | 7.92e-19 | 121 |
muscle precursor cell | 2.14e-16 | 58 |
myoblast | 2.14e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.14e-16 | 58 |
smooth muscle cell | 4.60e-16 | 43 |
smooth muscle myoblast | 4.60e-16 | 43 |
embryonic cell | 6.98e-16 | 250 |
electrically responsive cell | 9.34e-16 | 61 |
electrically active cell | 9.34e-16 | 61 |
muscle cell | 9.36e-16 | 55 |
vascular associated smooth muscle cell | 3.51e-12 | 32 |
connective tissue cell | 6.51e-10 | 361 |
mesenchymal cell | 7.59e-09 | 354 |
motile cell | 6.74e-07 | 386 |