FFCP PHASE1:Hg19::chr12:66218469..66218477,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-113bp_to_ENST00000545998_5end | |association_with_transcript=-113bp_to_ENST00000545998_5end | ||
|cluster_id=chr12:66218469..66218477,+ | |||
|coexpression_cluster_id=C749 | |||
|description=CAGE_peak_16_at_HMGA2_5end | |description=CAGE_peak_16_at_HMGA2_5end | ||
|id=chr12:66218469..66218477,+ | |id=chr12:66218469..66218477,+ | ||
|ontology_enrichment_celltype=CL:0002321!3.28e-23!248;CL:0000220!1.67e-22!246;CL:0000055!1.25e-21!180;CL:0000548!2.53e-19!679;CL:0000004!2.53e-19!679;CL:0000255!2.53e-19!679;CL:0000012!9.36e-19!682;CL:0002371!1.31e-16!591;CL:0000144!1.89e-14!625;CL:0000680!4.06e-13!57;CL:0000056!4.06e-13!57;CL:0000355!4.06e-13!57;CL:0000066!1.50e-12!254;CL:0000393!2.36e-12!60;CL:0000211!2.36e-12!60;CL:0000183!3.28e-12!59;CL:0000187!5.41e-12!54;CL:0000003!8.56e-12!722;CL:0000192!3.57e-10!42;CL:0000514!3.57e-10!42;CL:0000222!1.79e-09!119;CL:0000359!1.98e-09!32;CL:0000057!2.93e-08!75;CL:0000223!5.47e-08!59;CL:0002368!3.93e-07!13;CL:0002076!4.84e-07!43 | |ontology_enrichment_celltype=CL:0002321!3.28e-23!248;CL:0000220!1.67e-22!246;CL:0000055!1.25e-21!180;CL:0000548!2.53e-19!679;CL:0000004!2.53e-19!679;CL:0000255!2.53e-19!679;CL:0000012!9.36e-19!682;CL:0002371!1.31e-16!591;CL:0000144!1.89e-14!625;CL:0000680!4.06e-13!57;CL:0000056!4.06e-13!57;CL:0000355!4.06e-13!57;CL:0000066!1.50e-12!254;CL:0000393!2.36e-12!60;CL:0000211!2.36e-12!60;CL:0000183!3.28e-12!59;CL:0000187!5.41e-12!54;CL:0000003!8.56e-12!722;CL:0000192!3.57e-10!42;CL:0000514!3.57e-10!42;CL:0000222!1.79e-09!119;CL:0000359!1.98e-09!32;CL:0000057!2.93e-08!75;CL:0000223!5.47e-08!59;CL:0002368!3.93e-07!13;CL:0002076!4.84e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0000359;7.00e-10;32!CL:0000192;6.31e-08;43!CL:0002551;9.25e-08;6!CL:0002539;1.97e-07;10!CL:0000187;2.83e-07;55!CL:0002540;4.85e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.10e-15,250;CL:0000680,7.22e-13,58;CL:0000056,7.22e-13,58;CL:0000355,7.22e-13,58;CL:0000393,4.99e-12,61;CL:0000211,4.99e-12,61;CL:0000187,2.17e-11,55;CL:0000359,3.44e-10,32;CL:0000192,8.72e-10,43;CL:0000514,8.72e-10,43;CL:0000222,8.72e-08,121;CL:0002551,1.49e-07,6;CL:0002539,4.62e-07,10;CL:0002540,5.04e-07,6;CL:0000066,8.91e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000514;6.31e-08;43!CL:0000355;1.25e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000019;2.06e-09;19!UBERON:0000047;2.06e-09;19!UBERON:0004088;2.06e-09;19!UBERON:0010230;2.06e-09;19!UBERON:0001801;7.78e-09;14!UBERON:0000970;9.90e-09;20!UBERON:0002104;4.06e-08;21!UBERON:0001456;4.06e-08;21!UBERON:0004237;1.97e-07;10!UBERON:0004695;1.97e-07;10!UBERON:0002111;1.97e-07;10!UBERON:0004178;1.97e-07;10!UBERON:0002385;2.50e-07;31!UBERON:0001015;2.50e-07;31!UBERON:0000383;2.50e-07;31!UBERON:0000020;4.61e-07;23 | |||
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| ||
|short_description=p16@HMGA2 | |short_description=p16@HMGA2 | ||
}} | }} |
Latest revision as of 23:25, 19 September 2015
Short description: | p16@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | -113bp_to_ENST00000545998_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.10e-15 | 250 |
muscle precursor cell | 7.22e-13 | 58 |
myoblast | 7.22e-13 | 58 |
multi-potent skeletal muscle stem cell | 7.22e-13 | 58 |
electrically responsive cell | 4.99e-12 | 61 |
electrically active cell | 4.99e-12 | 61 |
muscle cell | 2.17e-11 | 55 |
vascular associated smooth muscle cell | 3.44e-10 | 32 |
smooth muscle cell | 8.72e-10 | 43 |
smooth muscle myoblast | 8.72e-10 | 43 |
mesodermal cell | 8.72e-08 | 121 |
fibroblast of dermis | 1.49e-07 | 6 |
aortic smooth muscle cell | 4.62e-07 | 10 |
mesenchymal stem cell of the bone marrow | 5.04e-07 | 6 |
epithelial cell | 8.91e-07 | 253 |