FFCP PHASE1:Hg19::chr3:12800751..12800777,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55287 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25620 | |||
|TSSclassifier=strong | |||
|UniProt=C9JID5 | |||
|association_with_transcript=0bp_to_ENST00000435218,ENST00000435575_5end | |||
|cluster_id=chr3:12800751..12800777,- | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_1_at_TMEM40_5end | |||
|id=chr3:12800751..12800777,- | |||
|ontology_enrichment_celltype=CL:0000066!1.13e-26!254;CL:0002076!3.07e-17!43;CL:0000223!5.52e-13!59;CL:0002368!6.63e-09!13;CL:0002251!3.55e-08!21;CL:0002159!1.46e-07!13;CL:0000076!5.47e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.56e-16;42!CL:0002368;1.34e-11;13!CL:0002251;3.08e-09;20!CL:0002159;4.22e-09;14!CL:0002202;1.14e-07;9!CL:0002632;1.14e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.46e-30,253;CL:0002076,6.75e-22,42;CL:0000223,2.91e-16,58;CL:0002368,1.26e-11,13;CL:0002251,3.04e-09,20;CL:0002159,4.50e-09,14;CL:0002202,1.08e-07,9;CL:0002632,1.08e-07,9;CL:0000076,1.83e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;2.67e-09;58!UBERON:0008947;8.93e-07;29 | |||
|ontology_enrichment_disease=DOID:305!1.30e-10!106;DOID:1749!3.76e-08!14;DOID:0050687!5.08e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.31e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.29e-12,106;DOID:1749,1.34e-10,14;DOID:0050687,1.85e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.51e-16!169;UBERON:0000925!3.51e-16!169;UBERON:0006595!3.51e-16!169;UBERON:0001004!8.29e-14!72;UBERON:0000077!2.75e-12!130;UBERON:0000065!1.97e-11!53;UBERON:0001007!4.65e-11!155;UBERON:0001555!4.65e-11!155;UBERON:0007026!4.65e-11!155;UBERON:0004921!2.39e-10!129;UBERON:0004185!2.39e-10!129;UBERON:0001041!4.56e-10!98;UBERON:0000464!5.50e-09!104;UBERON:0008947!1.68e-08!38;UBERON:0003258!1.68e-08!38;UBERON:0000072!3.42e-08!46;UBERON:0000161!6.04e-08!35;UBERON:0000466!5.35e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;1.05e-09;44!UBERON:0000178;1.96e-08;15!UBERON:0000179;1.96e-08;15!UBERON:0000463;1.96e-08;15!UBERON:0001004;5.02e-08;65!UBERON:0000072;1.81e-07;37!UBERON:0005910;2.66e-07;6!UBERON:0000486;2.92e-07;12!UBERON:0000365;7.31e-07;5!UBERON:0005178;8.64e-07;34!UBERON:0002224;8.64e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,9.45e-16,160;UBERON:0000925,9.45e-16,160;UBERON:0006595,9.45e-16,160;UBERON:0001004,1.26e-15,74;UBERON:0000065,7.83e-14,54;UBERON:0008947,5.60e-11,38;UBERON:0003258,5.60e-11,38;UBERON:0001007,6.55e-10,145;UBERON:0001555,6.55e-10,145;UBERON:0007026,6.55e-10,145;UBERON:0000072,1.19e-09,47;UBERON:0001041,3.35e-09,87;UBERON:0004921,6.64e-09,118;UBERON:0005631,1.60e-08,14;UBERON:0000158,1.60e-08,14;UBERON:0000178,1.83e-08,15;UBERON:0000179,1.83e-08,15;UBERON:0000463,1.83e-08,15;UBERON:0000161,2.86e-08,36;UBERON:0001008,4.21e-08,48;UBERON:0005177,8.04e-08,101;UBERON:0006554,1.18e-07,47;UBERON:0005153,1.70e-07,37;UBERON:0005178,1.79e-07,34;UBERON:0002224,1.79e-07,34;UBERON:0005910,2.58e-07,6;UBERON:0005181,4.30e-07,35;UBERON:0000365,7.20e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,9.82935746006035,8.37361401566913,13.1064823278103,13.4521158896511,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,7.47392126012918,5.75744097145819,2.16742572642506,146.187974692149,149.69934163279,87.6317004095287,0.0774672005803016,0,0,1.10799081706375,0.401088894940283,0,0.223915474239924,0,0,0,0,0,0.464858073811369,0,0,0,0,0.236482229888585,0,0,0,0,0,0.224723484445085,0.306083892370903,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0,0,7.26479403160043,0,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,5.46138611262132,0,0,1.60158394814405,5.74752439954483,0.661044872784862,0.954053754535364,0,0,0,6.60856642895129,7.28661131875997,1.58030450865046,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.301150238155546,0.383959833463255,1.24930726552346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.263504357079378,0.589405839739707,281.964553138428,148.684561556556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0.488124115096339,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,2.63560834872127,7.75560528296651,229.385471426973,0,0,0,0,0.354668382198357,0.560677600142307,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,4.56377457235559,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0.10075209822764,0.339121184620975,276.169759170351,232.652440863982,164.05222856251,0.365921118388786,0.132529768321485,0.116193942869518,2.48786532036889,0.504641701751257,0,1.56449532329816,1.92972281457866,1.38134921352481,0,0,3.54920400119532,3.37169380156203,1.68707720918437,2.97793726377464,2.39667388501647,3.08451804844426,3.91010793664477,3.53198637225623,1.53898862778556,0.738155454624648,0,0,0,0,0.982827216677626,0,0,6.51838724278502,0,213.135054263551,147.246296767482,153.608269844972,177.306872478584,0,0,0,0,0,0,0,0,2.37061319387782,4.29243081047436,0,0,0,355.251230809885,198.050929146455,162.19071124529,101.828040313139,82.8306724764792,93.1619910371463,0,0,0,0,0,0.126995788584338,0,0,5.13217338068116,0,0,0,0.897048674762886,0,0.36669142910475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49404214368309,8.97484377612075,11.189218862773,0,0,0,1.45579603071565,2.49800584316026,6.62350143142526,0.702848489956279,0,0,0,0.664225598535437,0.184369168541703,0.0868836144680828,0.783204629850962,0,7.85718499266972,6.90285442619574,2.77491650288955,3.94065842880137,24.9653159265746,1.20956117331872,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,1.81289174387433,256.447775517901,80.2946223521016,0,0,0.393373244878272,24.3647790970002,20.0239876471478,3.13739907670742,1.46139224653261,6.33309773357254,0,0,0,0,0,1.50506932156456,25.4876273045038,9.14183609821597,5.1491193586101,2.85037839639715,3.39866086332371,0,0,0,25.5541708886351,0,0,160.794350638928,92.308554937186,0,0,0,0,0,0,0,0.0852266274161009,0,190.242937580486,115.890610621159,76.0571766467721,59.9865640473411,0,0,0,0,0.532306030317022,0,0,0,0,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.6196469961995,0,0,0,0,0,0,0,0.379473173765715,0,162.711592618841,147.466500617873,118.691173498842,25.0422510066233,315.990943540683,252.707213501438,229.696819531998,270.843888844005,86.773541178701,74.9344462999528,71.2058983967703,37.8788522977884,48.1293859510847,86.2469503886314,78.8445898367648,73.7606413953671,0.213648142254946,0,34.7957106693065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97501246323581,0,0,0,0,0,0.891547074219827,0,47.2714079780626,35.9327263807493,73.1042470996172,0,0.140669416410513,0,0,0,0.996239941255349,0,0,2.86352311006033,0,0,0.898683511473268,2.86433879480975,0,19.5313943161129,31.1328020051022,0,0,0,0,4.16684417736373,3.06109999986685,0,18.2069517256799,3.55955110409873,10.1646703160213,13.1002481831757,0,0,0,0,0,0,0,0,0.10893846351899,101.77933332338,16.698206095324,0,0.922255617552241,14.181707816744,4.78048436456836,42.1081530846134,10.2589304610086,43.708851633528,0,0,0,0,0,0,0,0,9.28391483923319,2.77495773870551,0.848118428603645,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,58.5037210606948,2.42780379534093,1.18375320854817,0,0.91821828489147,0.189559738885464,0.150323419414493,0.103688191397247,3.32326936353593,1.98595173525299,1.88359751044335,1.19472429772959,2.56148591426813,1.94144542218394,15.6203764501618,14.4048824199135,32.1248472281685,1.04836000945218,0,0,0,0,86.1262466417164,0,5.64951851951331,0,0.397429223405979,0,12.1241857295578,3.36667045056442,0,3.59657297247834,0,0.114536596165916,0,0,5.46711156487903,8.48498524620464,1.08723364858891,1.98745407993433,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0.458320848023367,0,9.58459202395157,0.858452096273142,0.669514372325618,1.2764859772478,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,8.99895566206002,51.8447309553826,0.0607495566580247,8.05043250238239,0.394028536495991,0.8917279982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| |||
|short_description=p1@TMEM40 | |||
}} |
Latest revision as of 06:38, 20 September 2015
Short description: | p1@TMEM40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM40_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 0bp_to_ENST00000435218, ENST00000435575_5end |
EntrezGene: | TMEM40 |
HGNC: | 25620 |
UniProt: | C9JID5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.46e-30 | 253 |
endo-epithelial cell | 6.75e-22 | 42 |
endodermal cell | 2.91e-16 | 58 |
respiratory epithelial cell | 1.26e-11 | 13 |
epithelial cell of alimentary canal | 3.04e-09 | 20 |
general ecto-epithelial cell | 4.50e-09 | 14 |
epithelial cell of tracheobronchial tree | 1.08e-07 | 9 |
epithelial cell of lower respiratory tract | 1.08e-07 | 9 |
squamous epithelial cell | 1.83e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 9.45e-16 | 160 |
endoderm | 9.45e-16 | 160 |
presumptive endoderm | 9.45e-16 | 160 |
respiratory system | 1.26e-15 | 74 |
respiratory tract | 7.83e-14 | 54 |
respiratory primordium | 5.60e-11 | 38 |
endoderm of foregut | 5.60e-11 | 38 |
digestive system | 6.55e-10 | 145 |
digestive tract | 6.55e-10 | 145 |
primitive gut | 6.55e-10 | 145 |
segment of respiratory tract | 1.19e-09 | 47 |
foregut | 3.35e-09 | 87 |
subdivision of digestive tract | 6.64e-09 | 118 |
extraembryonic membrane | 1.60e-08 | 14 |
membranous layer | 1.60e-08 | 14 |
blood | 1.83e-08 | 15 |
haemolymphatic fluid | 1.83e-08 | 15 |
organism substance | 1.83e-08 | 15 |
orifice | 2.86e-08 | 36 |
renal system | 4.21e-08 | 48 |
trunk region element | 8.04e-08 | 101 |
urinary system structure | 1.18e-07 | 47 |
epithelial bud | 1.70e-07 | 37 |
thoracic cavity element | 1.79e-07 | 34 |
thoracic cavity | 1.79e-07 | 34 |
transitional epithelium | 2.58e-07 | 6 |
thoracic segment organ | 4.30e-07 | 35 |
urothelium | 7.20e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.29e-12 | 106 |
squamous cell carcinoma | 1.34e-10 | 14 |
cell type cancer | 1.85e-08 | 143 |