FFCP PHASE1:Hg19::chr4:109086321..109086357,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000509428_5end | |association_with_transcript=0bp_to_ENST00000509428_5end | ||
|cluster_id=chr4:109086321..109086357,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_16_at_LEF1_5end | |description=CAGE_peak_16_at_LEF1_5end | ||
|id=chr4:109086321..109086357,- | |id=chr4:109086321..109086357,- | ||
|ontology_enrichment_celltype=CL:0000084!3.84e-25!25;CL:0000827!3.84e-25!25;CL:0000791!3.31e-24!18;CL:0000789!3.31e-24!18;CL:0002420!3.31e-24!18;CL:0002419!3.31e-24!18;CL:0000790!3.31e-24!18;CL:0000542!1.37e-23!53;CL:0000051!1.37e-23!53;CL:0000838!2.97e-22!52;CL:0000624!3.18e-15!6;CL:0000625!3.73e-13!11;CL:0002087!1.15e-11!119;CL:0000738!2.12e-10!140;CL:0000898!3.04e-08!3;CL:0000842!4.16e-08!3;CL:0000623!1.55e-07!3;CL:0000825!1.55e-07!3;CL:0002031!1.55e-07!124;CL:0000037!5.86e-07!172;CL:0000566!5.86e-07!172 | |ontology_enrichment_celltype=CL:0000084!3.84e-25!25;CL:0000827!3.84e-25!25;CL:0000791!3.31e-24!18;CL:0000789!3.31e-24!18;CL:0002420!3.31e-24!18;CL:0002419!3.31e-24!18;CL:0000790!3.31e-24!18;CL:0000542!1.37e-23!53;CL:0000051!1.37e-23!53;CL:0000838!2.97e-22!52;CL:0000624!3.18e-15!6;CL:0000625!3.73e-13!11;CL:0002087!1.15e-11!119;CL:0000738!2.12e-10!140;CL:0000898!3.04e-08!3;CL:0000842!4.16e-08!3;CL:0000623!1.55e-07!3;CL:0000825!1.55e-07!3;CL:0002031!1.55e-07!124;CL:0000037!5.86e-07!172;CL:0000566!5.86e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000084;1.19e-30;25!CL:0000624;4.32e-28;6!CL:0000791;9.46e-23;18!CL:0000789;9.46e-23;18!CL:0002419;9.46e-23;18!CL:0000815;1.47e-14;2!CL:0000792;1.47e-14;2!CL:0002677;1.47e-14;2!CL:0000898;5.24e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.67e-30,25;CL:0000827,1.67e-30,25;CL:0000624,4.85e-28,6;CL:0000791,1.15e-22,18;CL:0000789,1.15e-22,18;CL:0002420,1.15e-22,18;CL:0002419,1.15e-22,18;CL:0000790,1.15e-22,18;CL:0000815,1.47e-14,2;CL:0000792,1.47e-14,2;CL:0002677,1.47e-14,2;CL:0000838,1.20e-13,52;CL:0000542,2.37e-13,53;CL:0000051,2.37e-13,53;CL:0000898,5.24e-10,3;CL:0002087,3.00e-07,115;CL:0000738,7.76e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;9.46e-23;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.62e-09!15;UBERON:0000179!5.62e-09!15;UBERON:0000463!5.62e-09!15;UBERON:0004177!1.51e-08!7 | |ontology_enrichment_uberon=UBERON:0000178!5.62e-09!15;UBERON:0000179!5.62e-09!15;UBERON:0000463!5.62e-09!15;UBERON:0004177!1.51e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.80e-15;2!UBERON:0005058;2.80e-15;2!UBERON:0009113;2.80e-15;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.56e-08,4;UBERON:0005058,4.56e-08,4;UBERON:0009113,4.56e-08,4;UBERON:0003295,4.56e-08,4;UBERON:0005562,4.56e-08,4;UBERON:0000974,8.91e-07,10 | |||
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| ||
|short_description=p16@LEF1 | |short_description=p16@LEF1 | ||
}} | }} |
Latest revision as of 08:57, 20 September 2015
Short description: | p16@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_LEF1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000509428_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.67e-30 | 25 |
pro-T cell | 1.67e-30 | 25 |
CD4-positive, alpha-beta T cell | 4.85e-28 | 6 |
mature alpha-beta T cell | 1.15e-22 | 18 |
alpha-beta T cell | 1.15e-22 | 18 |
immature T cell | 1.15e-22 | 18 |
mature T cell | 1.15e-22 | 18 |
immature alpha-beta T cell | 1.15e-22 | 18 |
regulatory T cell | 1.47e-14 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.47e-14 | 2 |
naive regulatory T cell | 1.47e-14 | 2 |
lymphoid lineage restricted progenitor cell | 1.20e-13 | 52 |
lymphocyte | 2.37e-13 | 53 |
common lymphoid progenitor | 2.37e-13 | 53 |
naive T cell | 5.24e-10 | 3 |
nongranular leukocyte | 3.00e-07 | 115 |
leukocyte | 7.76e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.56e-08 | 4 |
hemolymphoid system gland | 4.56e-08 | 4 |
thymic region | 4.56e-08 | 4 |
pharyngeal gland | 4.56e-08 | 4 |
thymus primordium | 4.56e-08 | 4 |
neck | 8.91e-07 | 10 |