FFCP PHASE1:Hg19::chr19:6464243..6464325,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=92359 | |EntrezGene=92359 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20237 | |HGNC=20237 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BUF7 | |UniProt=Q9BUF7 | ||
|association_with_transcript=0bp_to_ENST00000308243,ENST00000356762,NM_139161,NM_174881,uc002mez.2,uc002mfa.2_5end | |association_with_transcript=0bp_to_ENST00000308243,ENST00000356762,NM_139161,NM_174881,uc002mez.2,uc002mfa.2_5end | ||
|cluster_id=chr19:6464243..6464325,+ | |||
|coexpression_cluster_id=C1334 | |||
|description=CAGE_peak_1_at_CRB3_5end | |description=CAGE_peak_1_at_CRB3_5end | ||
|id=chr19:6464243..6464325,+ | |id=chr19:6464243..6464325,+ | ||
|ontology_enrichment_celltype=CL:0000066!4.67e-33!254;CL:0000223!1.57e-17!59;CL:0002076!4.97e-16!43;CL:0002368!1.31e-07!13;CL:0002159!1.35e-07!13;CL:0002251!2.99e-07!21 | |ontology_enrichment_celltype=CL:0000066!4.67e-33!254;CL:0000223!1.57e-17!59;CL:0002076!4.97e-16!43;CL:0002368!1.31e-07!13;CL:0002159!1.35e-07!13;CL:0002251!2.99e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.92e-13;42!CL:0002368;7.39e-09;13!CL:1000507;2.67e-08;10!CL:1000494;2.67e-08;10!CL:0002159;6.80e-08;14!CL:0002251;1.04e-07;20!CL:0000039;6.80e-07;7!CL:0000586;6.80e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.28e-36,253;CL:0000223,2.64e-18,58;CL:0002076,1.76e-17,42;CL:0002368,7.96e-09,13;CL:1000507,2.87e-08,10;CL:1000494,2.87e-08,10;CL:0002159,6.45e-08,14;CL:0002251,1.00e-07,20;CL:0000039,6.56e-07,7;CL:0000586,6.56e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000223;3.70e-10;58!UBERON:0006595;3.25e-09;86!UBERON:0008947;3.39e-08;29 | |||
|ontology_enrichment_disease=DOID:305!1.48e-26!106;DOID:0050687!2.87e-16!143;DOID:1749!1.81e-09!14;DOID:299!6.32e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.69e-11;14!DOID:305;2.01e-09;106!DOID:299;3.86e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.96e-29,106;DOID:0050687,8.07e-19,143;DOID:1749,6.83e-11,14;DOID:299,3.63e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.58e-25!169;UBERON:0000925!3.58e-25!169;UBERON:0006595!3.58e-25!169;UBERON:0001007!2.13e-21!155;UBERON:0001555!2.13e-21!155;UBERON:0007026!2.13e-21!155;UBERON:0004921!4.05e-21!129;UBERON:0004185!4.05e-21!129;UBERON:0000077!9.39e-18!130;UBERON:0001004!9.28e-16!72;UBERON:0000466!5.13e-15!126;UBERON:0001041!9.21e-15!98;UBERON:0000464!6.04e-13!104;UBERON:0005911!2.90e-12!82;UBERON:0000065!3.41e-12!53;UBERON:0005177!3.00e-11!107;UBERON:0008947!4.78e-10!38;UBERON:0003258!4.78e-10!38;UBERON:0001008!4.71e-09!45;UBERON:0000072!6.39e-09!46;UBERON:0009569!6.51e-09!113;UBERON:0006554!1.02e-08!44;UBERON:0005153!1.29e-08!37;UBERON:0002530!5.12e-08!59;UBERON:0000161!1.58e-07!35;UBERON:0002553!2.27e-07!70;UBERON:0000058!3.37e-07!26;UBERON:0005181!4.75e-07!35;UBERON:0003064!5.51e-07!37;UBERON:0005178!7.15e-07!34;UBERON:0002224!7.15e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;1.60e-09;44!UBERON:0004921;6.69e-09;33!UBERON:0004211;2.67e-08;10!UBERON:0009773;2.67e-08;10!UBERON:0001231;2.67e-08;10!UBERON:0004810;2.67e-08;10!UBERON:0006554;2.86e-08;30!UBERON:0001008;2.86e-08;30!UBERON:0001004;1.06e-07;65!UBERON:0000072;1.37e-07;37!UBERON:0005178;4.80e-07;34!UBERON:0002224;4.80e-07;34!UBERON:0003101;7.28e-07;22!UBERON:0000079;7.28e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.46e-27,160;UBERON:0000925,1.46e-27,160;UBERON:0006595,1.46e-27,160;UBERON:0001007,6.39e-24,145;UBERON:0001555,6.39e-24,145;UBERON:0007026,6.39e-24,145;UBERON:0004921,4.48e-23,118;UBERON:0001041,1.47e-15,87;UBERON:0001004,7.42e-15,74;UBERON:0005911,6.19e-14,82;UBERON:0005177,1.75e-13,101;UBERON:0000065,1.29e-12,54;UBERON:0008947,1.47e-11,38;UBERON:0003258,1.47e-11,38;UBERON:0001008,3.00e-11,48;UBERON:0006554,7.51e-11,47;UBERON:0009569,1.32e-10,112;UBERON:0005153,4.06e-10,37;UBERON:0000072,6.04e-09,47;UBERON:0004810,2.87e-08,10;UBERON:0005157,3.93e-08,47;UBERON:0005178,4.82e-08,34;UBERON:0002224,4.82e-08,34;UBERON:0000161,1.04e-07,36;UBERON:0005181,1.27e-07,35;UBERON:0002530,1.48e-07,59;UBERON:0005172,3.36e-07,54;UBERON:0005173,3.36e-07,54;UBERON:0003929,6.62e-07,54;UBERON:0001048,6.71e-07,160;UBERON:0003101,7.16e-07,22;UBERON:0000079,7.16e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,22.3617882216373,117.230596219368,0.873765488520689,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.1466881630153,6.32532429434325,17.378438477839,0,0,0,0,0.200544447470142,0.434021741431704,0,0.647787332037959,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,1.20118796110804,0,0,0,0.569212969109448,1.76171156811282,1.52909291250092,1.32171328579026,0.560508562981536,0,2.16380747125216,3.93010762749165,1.23360899399706,0.668745981562712,4.56291173287027,5.20792586308207,3.89653456815823,0,0,0.443067789167242,0.270803863765016,1.15282187753108,0.130059347559878,0,0,0,3.26230438956533,1.87278579662799,3.1360657141493,0.113309342697566,1.53288197440768,2.06176467289578,0.506039384039006,0.637130828648193,0,0,1.50575119077773,1.66382594500744,2.49861453104692,0.710331756132051,0.821127996921047,1.61285394579786,1.06976078313403,1.30341963494519,0,0,0,0,0,0,0,0,0,0,0,5.82856885964821,15.6646973965793,16.6852999252993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.15797509499322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3349988682675,6.2731607735892,7.1701148847251,9.87987019649723,12.1927386855766,12.781333715647,10.366105501537,13.6253259472839,9.12443397689575,0,0,0,0,0,5.44211280183282,3.37169380156203,1.92808823906786,2.42646740011267,2.39667388501647,2.60997681022206,4.1797705529651,3.72820783738158,3.46272441251751,0,0,0,0,13.9430538304014,4.91413608338813,10.6342183202653,0,15.8655085720616,0,12.4017822511747,13.4882103909143,12.1640056618073,5.74048359982883,0,0,0,0,0,0,0,0,11.8530659693891,9.4433477830436,0,0,0,22.4961201568265,8.7350706663407,10.7749073904214,5.0152772713595,5.23141089325132,12.651628412452,0,0,0.414656231081544,0.144119953416961,0.12624243342638,0,0,0,3.4214489204541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0.646882724578552,0.898401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0.206768026122887,1.94142780736755,1.38745825144478,4.24378600024763,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,14.0196961526282,14.8374788024431,28.3609445922561,0,0,0,17.5967849033891,9.85796314936509,10.980896768476,11.6911379722609,3.37765212457202,0,0,0.431831832204279,0,3.25135725052623,9.03041592938736,13.253566198342,44.0470284732224,5.37299411333228,0,0,4.87255237721139,0.984043937099117,3.25378394664303,8.14023992017006,0,0,4.59412430396938,9.1008434445113,0,0,0,0,0,0,0,0,0,12.2310837367124,9.2251232335251,1.27612712494584,20.23155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.71843338527672,8.71392958196524,6.53345909167936,7.81393546447267,9.47111819876706,18.5318623234388,11.9726141454902,6.20253180558791,0,0.764637207142375,0,0.476463550915578,0.411362273086194,0,0.540031437238115,1.58625035258854,0,0,21.0734585743687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.345524313474,0,0,0,0,9.5497793895076,5.64232893582013,3.68592842519078,0,0,0,0,2.53350489753592,1.59398390600856,3.03912307084262,11.840839149151,0,0.738508832766417,0,11.5930172980052,10.7412704805365,0,1.28236427328014,0,0,0,0,0,8.5941161158127,14.6058199993647,1.44999915086959,6.37243310398798,6.10208760702639,6.14607972596635,0,0,0,0,0,0,0,0,0.219385397153973,0,18.8222054776114,3.30886111566327,0,10.1448117930746,9.15527972979676,12.820389886797,4.78501739597879,8.33538099956947,9.59462596833542,0,0,0,0,0,0,0,0,4.64195741961659,19.2614713627794,14.5593663576959,0,16.9194528283346,10.2610774823873,12.2206028986725,0,0,0,0.134802265961354,0.802577647298789,0,0,5.47860933009851,0,19.3346357396201,4.83962864194656,0.30607276163049,0.063186579628488,0,0,0,0,0,0,5.97680046662565,0,30.546513946983,7.05545261383519,11.0565192357111,11.1825067674899,0,2.22539561964896,1.90032224424082,2.21711734043665,11.1537368961682,0,2.48578814858586,0,0,0,15.6441106187842,2.80555870880368,9.17847877379216,0,11.8154142066367,0,0,7.92301388934823,0,9.19206735005502,0,0,0,0,0,0,0,0,0,0,0,0,5.19165401297377,0.429226048136571,0,0,0,15.144473438569,4.09672547997563,5.43944665315699,4.58344098208457,0.492137407573744,0,0,0.136203406111576,8.84142316557605,11.0031549277787,8.72424709861289,2.0247650239635,15.476039091159,0,12.0756487535736,13.8698044846589,12.5366465642645,0.528001682597033,0,13.2421486150417,0,0,0,0,0,0,0,0.082092520749339,0,0,12.0172831616028,5.30027555648885,0,0,2.39521573038061,13.3914854240168,11.533040557311,5.81655928868764,12.4271716604159,0.992332043623902,0,1.94868157409433,7.021753835472,0,0,0,0,6.28216385000937,0,0,0,2.29363678276028,0.665574309221114,0.0620964029413835,0,0,0,0,0,2.81000943484129,3.91286777249228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.71771501024837,0,0,0,0,0,1.54400723580486,0.438568099157414,0,0,0,2.56241518587947,0,0,0,0,0,0.327130788511688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| ||
|short_description=p1@CRB3 | |short_description=p1@CRB3 | ||
}} | }} |
Latest revision as of 16:16, 24 September 2015
Short description: | p1@CRB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CRB3_5end |
Coexpression cluster: | C1334_Alveolar_gall_Renal_nasal_Prostate_signet_colon |
Association with transcript: | 0bp_to_ENST00000308243, ENST00000356762, NM_139161, NM_174881, uc002mez.2, uc002mfa.2_5end |
EntrezGene: | CRB3 |
HGNC: | 20237 |
UniProt: | Q9BUF7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.28e-36 | 253 |
endodermal cell | 2.64e-18 | 58 |
endo-epithelial cell | 1.76e-17 | 42 |
respiratory epithelial cell | 7.96e-09 | 13 |
kidney tubule cell | 2.87e-08 | 10 |
nephron tubule epithelial cell | 2.87e-08 | 10 |
general ecto-epithelial cell | 6.45e-08 | 14 |
epithelial cell of alimentary canal | 1.00e-07 | 20 |
germ line cell | 6.56e-07 | 7 |
germ cell | 6.56e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.46e-27 | 160 |
endoderm | 1.46e-27 | 160 |
presumptive endoderm | 1.46e-27 | 160 |
digestive system | 6.39e-24 | 145 |
digestive tract | 6.39e-24 | 145 |
primitive gut | 6.39e-24 | 145 |
subdivision of digestive tract | 4.48e-23 | 118 |
foregut | 1.47e-15 | 87 |
respiratory system | 7.42e-15 | 74 |
endo-epithelium | 6.19e-14 | 82 |
trunk region element | 1.75e-13 | 101 |
respiratory tract | 1.29e-12 | 54 |
respiratory primordium | 1.47e-11 | 38 |
endoderm of foregut | 1.47e-11 | 38 |
renal system | 3.00e-11 | 48 |
urinary system structure | 7.51e-11 | 47 |
subdivision of trunk | 1.32e-10 | 112 |
epithelial bud | 4.06e-10 | 37 |
segment of respiratory tract | 6.04e-09 | 47 |
nephron tubule epithelium | 2.87e-08 | 10 |
epithelial fold | 3.93e-08 | 47 |
thoracic cavity element | 4.82e-08 | 34 |
thoracic cavity | 4.82e-08 | 34 |
orifice | 1.04e-07 | 36 |
thoracic segment organ | 1.27e-07 | 35 |
gland | 1.48e-07 | 59 |
abdomen element | 3.36e-07 | 54 |
abdominal segment element | 3.36e-07 | 54 |
gut epithelium | 6.62e-07 | 54 |
primordium | 6.71e-07 | 160 |
male organism | 7.16e-07 | 22 |
male reproductive system | 7.16e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.96e-29 | 106 |
cell type cancer | 8.07e-19 | 143 |
squamous cell carcinoma | 6.83e-11 | 14 |
adenocarcinoma | 3.63e-08 | 25 |