FFCP PHASE1:Hg19::chr5:134871742..134871748,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4762 | |EntrezGene=4762 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7764 | |HGNC=7764 | ||
|TSSclassifier=strong | |||
|UniProt=Q92886,F1T0H3 | |UniProt=Q92886,F1T0H3 | ||
|association_with_transcript=-103bp_to_ENST00000314744,NM_006161,uc003lax.2_5end | |association_with_transcript=-103bp_to_ENST00000314744,NM_006161,uc003lax.2_5end | ||
|cluster_id=chr5:134871742..134871748,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_2_at_NEUROG1_5end | |description=CAGE_peak_2_at_NEUROG1_5end | ||
|id=chr5:134871742..134871748,- | |id=chr5:134871742..134871748,- | ||
|ontology_enrichment_celltype=CL:0000243!8.59e-07!15;CL:0000125!8.59e-07!15;CL:0000030!8.59e-07!15;CL:0000339!8.59e-07!15 | |ontology_enrichment_celltype=CL:0000243!8.59e-07!15;CL:0000125!8.59e-07!15;CL:0000030!8.59e-07!15;CL:0000339!8.59e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0000243;2.70e-10;15!CL:0000125;2.70e-10;15!CL:0000095;2.56e-09;17!CL:0002319;7.67e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,2.70e-10,15;CL:0000125,2.70e-10,15;CL:0000030,2.70e-10,15;CL:0000339,2.70e-10,15;CL:0000095,2.56e-09,17;CL:0000123,2.56e-09,17;CL:0002319,7.67e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006238;2.51e-15;10!UBERON:0003056;2.09e-14;3!CL:0000339;2.70e-10;15 | |||
|ontology_enrichment_disease=DOID:3093!3.01e-09!11;DOID:5409!1.40e-07!4 | |ontology_enrichment_disease=DOID:3093!3.01e-09!11;DOID:5409!1.40e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:3093;3.84e-14;11!DOID:5409;2.94e-11;4!DOID:1325;5.54e-07;7!DOID:3904;5.54e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,3.84e-14,11;DOID:5409,2.80e-11,4;DOID:1325,5.38e-07,7;DOID:3904,5.38e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0001905!1.14e-50!2;UBERON:0002757!1.14e-50!2;UBERON:0010134!1.14e-50!2;UBERON:0002784!1.14e-50!2;UBERON:0005408!1.14e-50!2;UBERON:0001899!1.14e-50!2;UBERON:0003296!5.94e-26!4;UBERON:0010133!5.94e-26!4;UBERON:0000966!1.21e-20!5;UBERON:0005388!1.21e-20!5;UBERON:0001802!1.21e-20!5;UBERON:0001894!2.65e-15!7;UBERON:0006222!2.65e-15!7;UBERON:0005743!2.77e-07!86;UBERON:0003056!7.88e-07!61 | |ontology_enrichment_uberon=UBERON:0001905!1.14e-50!2;UBERON:0002757!1.14e-50!2;UBERON:0010134!1.14e-50!2;UBERON:0002784!1.14e-50!2;UBERON:0005408!1.14e-50!2;UBERON:0001899!1.14e-50!2;UBERON:0003296!5.94e-26!4;UBERON:0010133!5.94e-26!4;UBERON:0000966!1.21e-20!5;UBERON:0005388!1.21e-20!5;UBERON:0001802!1.21e-20!5;UBERON:0001894!2.65e-15!7;UBERON:0006222!2.65e-15!7;UBERON:0005743!2.77e-07!86;UBERON:0003056!7.88e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.28e-79;2!UBERON:0002757;1.28e-79;2!UBERON:0010134;1.28e-79;2!UBERON:0005408;1.28e-79;2!UBERON:0001899;1.28e-79;2!UBERON:0003296;1.64e-40;4!UBERON:0010133;1.64e-40;4!UBERON:0002784;1.64e-40;4!UBERON:0001894;1.08e-23;7!UBERON:0000966;3.49e-09;5!UBERON:0005388;3.49e-09;5!UBERON:0001802;3.49e-09;5!UBERON:0000955;3.51e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.56e-79,2;UBERON:0002757,1.56e-79,2;UBERON:0010134,1.56e-79,2;UBERON:0005408,1.56e-79,2;UBERON:0001899,1.56e-79,2;UBERON:0003296,1.81e-40,4;UBERON:0010133,1.81e-40,4;UBERON:0002784,1.81e-40,4;UBERON:0001894,1.14e-23,7;UBERON:0006222,1.14e-23,7;UBERON:0000955,1.01e-09,68;UBERON:0006238,1.01e-09,68;UBERON:0001017,2.69e-08,81;UBERON:0000966,7.25e-08,6;UBERON:0005388,7.25e-08,6;UBERON:0001802,7.25e-08,6;UBERON:0001016,1.53e-07,89 | |||
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|short_description=p2@NEUROG1 | |short_description=p2@NEUROG1 | ||
}} | }} |
Latest revision as of 18:31, 24 September 2015
Short description: | p2@NEUROG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NEUROG1_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -103bp_to_ENST00000314744, NM_006161, uc003lax.2_5end |
EntrezGene: | NEUROG1 |
HGNC: | 7764 |
UniProt: | Q92886F1T0H3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 2.70e-10 | 15 |
glial cell | 2.70e-10 | 15 |
glioblast | 2.70e-10 | 15 |
glioblast (sensu Vertebrata) | 2.70e-10 | 15 |
neuron associated cell | 2.56e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.56e-09 | 17 |
neural cell | 7.67e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.56e-79 | 2 |
regional part of epithalamus | 1.56e-79 | 2 |
secretory circumventricular organ | 1.56e-79 | 2 |
circumventricular organ | 1.56e-79 | 2 |
epithalamus | 1.56e-79 | 2 |
gland of diencephalon | 1.81e-40 | 4 |
neuroendocrine gland | 1.81e-40 | 4 |
regional part of diencephalon | 1.81e-40 | 4 |
diencephalon | 1.14e-23 | 7 |
future diencephalon | 1.14e-23 | 7 |
brain | 1.01e-09 | 68 |
future brain | 1.01e-09 | 68 |
central nervous system | 2.69e-08 | 81 |
retina | 7.25e-08 | 6 |
photoreceptor array | 7.25e-08 | 6 |
posterior segment of eyeball | 7.25e-08 | 6 |
nervous system | 1.53e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 3.84e-14 | 11 |
lung small cell carcinoma | 2.80e-11 | 4 |
bronchus cancer | 5.38e-07 | 7 |
bronchogenic carcinoma | 5.38e-07 | 7 |