FFCP PHASE1:Hg19::chr3:130613001..130613078,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:130613001..130613078,+ to FFCP PHASE1:Hg19::chr3:130613001..130613078,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27032 | |EntrezGene=27032 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13211 | |HGNC=13211 | ||
|TSSclassifier=strong | |||
|UniProt=D6RHV9 | |UniProt=D6RHV9 | ||
|association_with_transcript=0bp_to_ENST00000504948,ENST00000505072,ENST00000513801,uc003enk.2,uc003enl.2,uc003enm.2,uc003enn.2_5end | |||
|cluster_id=chr3:130613001..130613078,+ | |||
|description=CAGE_peak_1_at_ATP2C1_5end | |||
|id=chr3:130613001..130613078,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.42e-25!180;CL:0000057!9.10e-15!75;CL:0000359!8.68e-14!32;CL:0000220!1.31e-13!246;CL:0002321!1.95e-13!248;CL:0000192!3.30e-12!42;CL:0000514!3.30e-12!42;CL:0000680!3.53e-12!57;CL:0000056!3.53e-12!57;CL:0000355!3.53e-12!57;CL:0000187!5.64e-12!54;CL:0000393!1.28e-09!60;CL:0000211!1.28e-09!60;CL:0000183!2.77e-09!59;CL:0002620!9.83e-09!23;CL:0000222!1.25e-08!119;CL:0002494!3.33e-08!16;CL:0000548!9.94e-08!679;CL:0000004!9.94e-08!679;CL:0000255!9.94e-08!679;CL:0000144!1.75e-07!625;CL:0000012!4.10e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.89e-13;32!CL:0000192;3.18e-09;43!CL:0002620;9.63e-09;23!CL:0002494;3.29e-08;16!CL:0000187;7.79e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.65e-15,76;CL:0000359,8.68e-14,32;CL:0002321,2.50e-13,250;CL:0000192,2.11e-12,43;CL:0000514,2.11e-12,43;CL:0000680,2.22e-12,58;CL:0000056,2.22e-12,58;CL:0000355,2.22e-12,58;CL:0000187,3.54e-12,55;CL:0000393,8.13e-10,61;CL:0000211,8.13e-10,61;CL:0002620,9.83e-09,23;CL:0000222,1.77e-08,121;CL:0002494,3.33e-08,16 | |||
|ontology_enrichment_development_v019=CL:0000514;3.18e-09;43 | |||
|ontology_enrichment_disease=DOID:193!1.63e-10!29;DOID:120!1.45e-09!27;DOID:2394!2.04e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:193;1.51e-10;29!DOID:120;1.38e-09;27!DOID:2394;1.98e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:193,1.63e-10,29;DOID:120,1.45e-09,27;DOID:2394,2.04e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.94e-15!83;UBERON:0002329!2.94e-15!83;UBERON:0003077!2.94e-15!83;UBERON:0003059!2.94e-15!83;UBERON:0007282!2.94e-15!83;UBERON:0009618!2.94e-15!83;UBERON:0007285!2.94e-15!83;UBERON:0005256!1.26e-13!143;UBERON:0004290!1.18e-12!70;UBERON:0000486!9.66e-12!82;UBERON:0000475!1.41e-11!365;UBERON:0001134!8.30e-11!61;UBERON:0002036!8.30e-11!61;UBERON:0003082!8.30e-11!61;UBERON:0002100!8.50e-11!216;UBERON:0002385!1.11e-10!63;UBERON:0001015!1.11e-10!63;UBERON:0000383!1.11e-10!63;UBERON:0001637!1.19e-10!42;UBERON:0003509!1.19e-10!42;UBERON:0004572!1.19e-10!42;UBERON:0002097!1.20e-10!40;UBERON:0002199!1.83e-10!45;UBERON:0002416!1.83e-10!45;UBERON:0003102!4.27e-10!95;UBERON:0004872!5.90e-10!84;UBERON:0000483!1.65e-09!309;UBERON:0003914!2.07e-09!118;UBERON:0004573!2.20e-09!33;UBERON:0004571!2.20e-09!33;UBERON:0000119!3.22e-09!312;UBERON:0000481!1.52e-08!347;UBERON:0000490!3.56e-08!138;UBERON:0001981!4.88e-07!60;UBERON:0007500!4.88e-07!60;UBERON:0004537!4.88e-07!60;UBERON:0006965!4.88e-07!60;UBERON:0003104!5.07e-07!238;UBERON:0009142!5.07e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.92e-08;33!UBERON:0004571;1.92e-08;33!UBERON:0002097;2.68e-08;41!UBERON:0002199;1.32e-07;46!UBERON:0002416;1.32e-07;46!UBERON:0001637;2.40e-07;42!UBERON:0003509;2.40e-07;42!UBERON:0004572;2.40e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,7.40e-13,71;UBERON:0003059,7.40e-13,71;UBERON:0007282,7.40e-13,71;UBERON:0004290,7.40e-13,71;UBERON:0009618,7.40e-13,71;UBERON:0003077,1.46e-12,72;UBERON:0007285,1.46e-12,72;UBERON:0007524,1.55e-12,73;UBERON:0000486,6.10e-12,83;UBERON:0003104,2.26e-11,160;UBERON:0009142,2.26e-11,160;UBERON:0003102,3.52e-11,99;UBERON:0001134,5.24e-11,62;UBERON:0002036,5.24e-11,62;UBERON:0003082,5.24e-11,62;UBERON:0002385,7.04e-11,64;UBERON:0001015,7.04e-11,64;UBERON:0000383,7.04e-11,64;UBERON:0002097,9.47e-11,41;UBERON:0007503,1.14e-10,78;UBERON:0001637,1.19e-10,42;UBERON:0003509,1.19e-10,42;UBERON:0004572,1.19e-10,42;UBERON:0002199,1.42e-10,46;UBERON:0002416,1.42e-10,46;UBERON:0000483,6.58e-10,306;UBERON:0000490,7.19e-10,148;UBERON:0005256,8.24e-10,122;UBERON:0000119,1.31e-09,309;UBERON:0004872,1.60e-09,83;UBERON:0004573,2.20e-09,33;UBERON:0004571,2.20e-09,33;UBERON:0003914,3.11e-09,117;UBERON:0002100,1.81e-08,199 | |||
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| ||
|short_description=p1@ATP2C1 | |||
}} | }} |
Latest revision as of 19:10, 24 September 2015
Short description: | p1@ATP2C1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATP2C1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000504948, ENST00000505072, ENST00000513801, uc003enk.2, uc003enl.2, uc003enm.2, uc003enn.2_5end |
EntrezGene: | ATP2C1 |
HGNC: | 13211 |
UniProt: | D6RHV9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.65e-15 | 76 |
vascular associated smooth muscle cell | 8.68e-14 | 32 |
embryonic cell | 2.50e-13 | 250 |
smooth muscle cell | 2.11e-12 | 43 |
smooth muscle myoblast | 2.11e-12 | 43 |
muscle precursor cell | 2.22e-12 | 58 |
myoblast | 2.22e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.22e-12 | 58 |
muscle cell | 3.54e-12 | 55 |
electrically responsive cell | 8.13e-10 | 61 |
electrically active cell | 8.13e-10 | 61 |
skin fibroblast | 9.83e-09 | 23 |
mesodermal cell | 1.77e-08 | 121 |
cardiocyte | 3.33e-08 | 16 |
Ontology term | p-value | n |
---|---|---|
somite | 7.40e-13 | 71 |
presomitic mesoderm | 7.40e-13 | 71 |
presumptive segmental plate | 7.40e-13 | 71 |
dermomyotome | 7.40e-13 | 71 |
trunk paraxial mesoderm | 7.40e-13 | 71 |
paraxial mesoderm | 1.46e-12 | 72 |
presumptive paraxial mesoderm | 1.46e-12 | 72 |
dense mesenchyme tissue | 1.55e-12 | 73 |
multilaminar epithelium | 6.10e-12 | 83 |
mesenchyme | 2.26e-11 | 160 |
entire embryonic mesenchyme | 2.26e-11 | 160 |
surface structure | 3.52e-11 | 99 |
skeletal muscle tissue | 5.24e-11 | 62 |
striated muscle tissue | 5.24e-11 | 62 |
myotome | 5.24e-11 | 62 |
muscle tissue | 7.04e-11 | 64 |
musculature | 7.04e-11 | 64 |
musculature of body | 7.04e-11 | 64 |
skin of body | 9.47e-11 | 41 |
epithelial vesicle | 1.14e-10 | 78 |
artery | 1.19e-10 | 42 |
arterial blood vessel | 1.19e-10 | 42 |
arterial system | 1.19e-10 | 42 |
integument | 1.42e-10 | 46 |
integumental system | 1.42e-10 | 46 |
epithelium | 6.58e-10 | 306 |
unilaminar epithelium | 7.19e-10 | 148 |
trunk mesenchyme | 8.24e-10 | 122 |
cell layer | 1.31e-09 | 309 |
splanchnic layer of lateral plate mesoderm | 1.60e-09 | 83 |
systemic artery | 2.20e-09 | 33 |
systemic arterial system | 2.20e-09 | 33 |
epithelial tube | 3.11e-09 | 117 |
trunk | 1.81e-08 | 199 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 1.63e-10 | 29 |
female reproductive organ cancer | 1.45e-09 | 27 |
ovarian cancer | 2.04e-09 | 14 |