FFCP PHASE1:Hg19::chr1:212965197..212965274,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=128387 | |EntrezGene=128387 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27010 | |HGNC=27010 | ||
|TSSclassifier=strong | |||
|UniProt=Q17R31,E9PNH3,E9PP81,E9PJE5,E9PQP8 | |UniProt=Q17R31,E9PNH3,E9PP81,E9PJE5,E9PQP8 | ||
|association_with_transcript=0bp_to_ENST00000366973,ENST00000488246,ENST00000525574,ENST00000526641,ENST00000526997,ENST00000531963,ENST00000532433,ENST00000533650_5end | |association_with_transcript=0bp_to_ENST00000366973,ENST00000488246,ENST00000525574,ENST00000526641,ENST00000526997,ENST00000531963,ENST00000532433,ENST00000533650_5end | ||
|cluster_id=chr1:212965197..212965274,+ | |||
|description=CAGE_peak_1_at_TATDN3_5end | |description=CAGE_peak_1_at_TATDN3_5end | ||
|id=chr1:212965197..212965274,+ | |id=chr1:212965197..212965274,+ | ||
|ontology_enrichment_celltype=CL:0002087!1.69e-15!119;CL:0000738!1.71e-15!140;CL:0000037!2.62e-15!172;CL:0000566!2.62e-15!172;CL:0002031!4.26e-14!124;CL:0002032!4.60e-14!165;CL:0000837!4.60e-14!165;CL:0000988!4.75e-13!182;CL:0000945!1.60e-09!24;CL:0000826!1.60e-09!24;CL:0000542!1.72e-09!53;CL:0000051!1.72e-09!53;CL:0000838!5.15e-09!52;CL:0002194!4.47e-07!63;CL:0000576!4.47e-07!63;CL:0000040!4.47e-07!63;CL:0000559!4.47e-07!63;CL:0000839!5.54e-07!70 | |ontology_enrichment_celltype=CL:0002087!1.69e-15!119;CL:0000738!1.71e-15!140;CL:0000037!2.62e-15!172;CL:0000566!2.62e-15!172;CL:0002031!4.26e-14!124;CL:0002032!4.60e-14!165;CL:0000837!4.60e-14!165;CL:0000988!4.75e-13!182;CL:0000945!1.60e-09!24;CL:0000826!1.60e-09!24;CL:0000542!1.72e-09!53;CL:0000051!1.72e-09!53;CL:0000838!5.15e-09!52;CL:0002194!4.47e-07!63;CL:0000576!4.47e-07!63;CL:0000040!4.47e-07!63;CL:0000559!4.47e-07!63;CL:0000839!5.54e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.22e-09;24 | |ontology_enrichment_celltype_v019=CL:0000945;1.22e-09;24 | ||
|ontology_enrichment_celltype_v019_2=CL:0002087,1.03e-15,115;CL:0000738,1.20e-15,136;CL:0000037,2.15e-15,168;CL:0002031,2.88e-14,120;CL:0002032,3.81e-14,161;CL:0000837,3.81e-14,161;CL:0000988,1.70e-13,177;CL:0000945,1.60e-09,24;CL:0000826,1.60e-09,24;CL:0000542,1.72e-09,53;CL:0000051,1.72e-09,53;CL:0000838,5.15e-09,52;CL:0002194,2.98e-07,59;CL:0000576,2.98e-07,59;CL:0000040,2.98e-07,59;CL:0000559,2.98e-07,59;CL:0000839,3.99e-07,66 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.14e-16!82;UBERON:0007023!8.46e-16!115;UBERON:0000073!9.52e-16!94;UBERON:0001016!9.52e-16!94;UBERON:0005743!1.54e-15!86;UBERON:0001049!2.31e-15!57;UBERON:0005068!2.31e-15!57;UBERON:0006241!2.31e-15!57;UBERON:0007135!2.31e-15!57;UBERON:0002780!3.66e-15!41;UBERON:0001890!3.66e-15!41;UBERON:0006240!3.66e-15!41;UBERON:0003080!3.29e-14!42;UBERON:0000955!2.89e-13!69;UBERON:0006238!2.89e-13!69;UBERON:0002616!4.38e-13!59;UBERON:0001893!2.87e-12!34;UBERON:0002020!5.66e-12!34;UBERON:0003528!5.66e-12!34;UBERON:0002791!1.02e-11!33;UBERON:0001869!1.68e-11!32;UBERON:0002619!9.77e-10!22;UBERON:0001950!2.16e-09!20;UBERON:0002346!1.88e-08!90;UBERON:0000956!4.55e-08!25;UBERON:0000203!4.55e-08!25;UBERON:0002390!5.13e-08!102;UBERON:0003061!5.13e-08!102;UBERON:0003075!8.00e-08!86;UBERON:0007284!8.00e-08!86;UBERON:0003056!2.27e-07!61 | |ontology_enrichment_uberon=UBERON:0001017!8.14e-16!82;UBERON:0007023!8.46e-16!115;UBERON:0000073!9.52e-16!94;UBERON:0001016!9.52e-16!94;UBERON:0005743!1.54e-15!86;UBERON:0001049!2.31e-15!57;UBERON:0005068!2.31e-15!57;UBERON:0006241!2.31e-15!57;UBERON:0007135!2.31e-15!57;UBERON:0002780!3.66e-15!41;UBERON:0001890!3.66e-15!41;UBERON:0006240!3.66e-15!41;UBERON:0003080!3.29e-14!42;UBERON:0000955!2.89e-13!69;UBERON:0006238!2.89e-13!69;UBERON:0002616!4.38e-13!59;UBERON:0001893!2.87e-12!34;UBERON:0002020!5.66e-12!34;UBERON:0003528!5.66e-12!34;UBERON:0002791!1.02e-11!33;UBERON:0001869!1.68e-11!32;UBERON:0002619!9.77e-10!22;UBERON:0001950!2.16e-09!20;UBERON:0002346!1.88e-08!90;UBERON:0000956!4.55e-08!25;UBERON:0000203!4.55e-08!25;UBERON:0002390!5.13e-08!102;UBERON:0003061!5.13e-08!102;UBERON:0003075!8.00e-08!86;UBERON:0007284!8.00e-08!86;UBERON:0003056!2.27e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.83e-11;41!UBERON:0001890;5.83e-11;41!UBERON:0001893;1.15e-10;34!UBERON:0003528;2.36e-10;34!UBERON:0002020;2.36e-10;34!UBERON:0001869;2.36e-10;32!UBERON:0002791;3.73e-10;32!UBERON:0002619;9.48e-10;22!UBERON:0000073;1.28e-09;53!UBERON:0002616;1.28e-09;53!UBERON:0001950;1.85e-09;20!UBERON:0000956;4.72e-08;25!UBERON:0000203;4.72e-08;25!UBERON:0000955;2.94e-07;68!UBERON:0001017;6.99e-07;75!UBERON:0001016;8.80e-07;83 | |ontology_enrichment_uberon_v019=UBERON:0002780;5.83e-11;41!UBERON:0001890;5.83e-11;41!UBERON:0001893;1.15e-10;34!UBERON:0003528;2.36e-10;34!UBERON:0002020;2.36e-10;34!UBERON:0001869;2.36e-10;32!UBERON:0002791;3.73e-10;32!UBERON:0002619;9.48e-10;22!UBERON:0000073;1.28e-09;53!UBERON:0002616;1.28e-09;53!UBERON:0001950;1.85e-09;20!UBERON:0000956;4.72e-08;25!UBERON:0000203;4.72e-08;25!UBERON:0000955;2.94e-07;68!UBERON:0001017;6.99e-07;75!UBERON:0001016;8.80e-07;83 | ||
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| ||
|short_description=p1@TATDN3 | |short_description=p1@TATDN3 | ||
}} | }} |
Latest revision as of 00:51, 25 September 2015
Short description: | p1@TATDN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TATDN3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000366973, ENST00000488246, ENST00000525574, ENST00000526641, ENST00000526997, ENST00000531963, ENST00000532433, ENST00000533650_5end |
EntrezGene: | TATDN3 |
HGNC: | 27010 |
UniProt: | Q17R31E9PNH3E9PP81E9PJE5E9PQP8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 1.03e-15 | 115 |
leukocyte | 1.20e-15 | 136 |
hematopoietic stem cell | 2.15e-15 | 168 |
hematopoietic lineage restricted progenitor cell | 2.88e-14 | 120 |
hematopoietic oligopotent progenitor cell | 3.81e-14 | 161 |
hematopoietic multipotent progenitor cell | 3.81e-14 | 161 |
hematopoietic cell | 1.70e-13 | 177 |
lymphocyte of B lineage | 1.60e-09 | 24 |
pro-B cell | 1.60e-09 | 24 |
lymphocyte | 1.72e-09 | 53 |
common lymphoid progenitor | 1.72e-09 | 53 |
lymphoid lineage restricted progenitor cell | 5.15e-09 | 52 |
monopoietic cell | 2.98e-07 | 59 |
monocyte | 2.98e-07 | 59 |
monoblast | 2.98e-07 | 59 |
promonocyte | 2.98e-07 | 59 |
myeloid lineage restricted progenitor cell | 3.99e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.30e-16 | 89 |
central nervous system | 1.75e-16 | 81 |
neural tube | 3.44e-16 | 56 |
neural rod | 3.44e-16 | 56 |
future spinal cord | 3.44e-16 | 56 |
neural keel | 3.44e-16 | 56 |
adult organism | 1.65e-15 | 114 |
regional part of nervous system | 1.98e-15 | 53 |
regional part of brain | 1.98e-15 | 53 |
regional part of forebrain | 3.66e-15 | 41 |
forebrain | 3.66e-15 | 41 |
anterior neural tube | 3.66e-15 | 41 |
future forebrain | 3.66e-15 | 41 |
brain | 6.36e-14 | 68 |
future brain | 6.36e-14 | 68 |
telencephalon | 2.87e-12 | 34 |
brain grey matter | 5.66e-12 | 34 |
gray matter | 5.66e-12 | 34 |
cerebral hemisphere | 1.68e-11 | 32 |
regional part of telencephalon | 3.03e-11 | 32 |
regional part of cerebral cortex | 9.77e-10 | 22 |
neocortex | 2.16e-09 | 20 |
neurectoderm | 2.29e-09 | 86 |
neural plate | 1.03e-08 | 82 |
presumptive neural plate | 1.03e-08 | 82 |
hematopoietic system | 4.19e-08 | 98 |
blood island | 4.19e-08 | 98 |
cerebral cortex | 4.55e-08 | 25 |
pallium | 4.55e-08 | 25 |
pre-chordal neural plate | 6.44e-08 | 61 |