FFCP PHASE1:Hg19::chr11:115064814..115064839,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:115064814..115064839,- to FFCP PHASE1:Hg19::chr11:115064814..115064839,-: NSchange) |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23705 | |EntrezGene=23705 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5951 | |HGNC=5951 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000543375_5end | |||
|cluster_id=chr11:115064814..115064839,- | |||
|description=CAGE_peak_4_at_CADM1_5end | |||
|id=chr11:115064814..115064839,- | |||
|ontology_enrichment_celltype=CL:0002620!4.20e-14!23;CL:0000838!7.77e-10!52;CL:0000542!1.35e-09!53;CL:0000051!1.35e-09!53;CL:0000945!3.68e-07!24;CL:0000826!3.68e-07!24;CL:0000080!9.27e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000785;3.44e-12;1!CL:0000819;3.44e-12;1!CL:0000084;2.86e-07;25!CL:0000542;3.18e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,3.08e-12,1;CL:0000838,8.27e-10,52;CL:0000542,1.30e-09,53;CL:0000051,1.30e-09,53;CL:0000084,2.70e-07,25;CL:0000827,2.70e-07,25;CL:0000785,9.54e-07,2;CL:0000955,9.54e-07,2;CL:0000818,9.54e-07,2;CL:0000954,9.54e-07,2;CL:0000816,9.54e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004140;9.37e-13;1!CL:0000051;3.18e-07;53 | |||
|ontology_enrichment_disease=DOID:0060058!4.85e-14!10;DOID:17!4.79e-07!5;DOID:450!4.79e-07!5;DOID:66!4.79e-07!5;DOID:423!4.79e-07!5;DOID:0080000!4.79e-07!5;DOID:11722!4.79e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.81e-27;10!DOID:4960;1.57e-12;1!DOID:0070004;1.57e-12;1!DOID:0060060;3.44e-12;1!DOID:0060073;3.44e-12;1!DOID:0060061;3.44e-12;1!DOID:8675;3.44e-12;1!DOID:8691;3.44e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.45e-27,10;DOID:4960,1.57e-12,1;DOID:0070004,1.57e-12,1;DOID:0060060,2.46e-12,1;DOID:0060061,2.46e-12,1;DOID:8691,2.46e-12,1;DOID:0060073,3.08e-12,1;DOID:8675,3.08e-12,1;DOID:2531,5.16e-10,51;DOID:0060083,5.16e-10,51 | |||
|ontology_enrichment_uberon=UBERON:0002097!2.62e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0007195;2.08e-12;1!UBERON:0002146;3.44e-12;1!UBERON:0005623;3.44e-12;1!UBERON:0002331;9.08e-11;10!UBERON:0002390;1.17e-08;32!UBERON:0000178;2.40e-07;15!UBERON:0000179;2.40e-07;15!UBERON:0000463;2.40e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007195,2.20e-12,1;UBERON:0002146,4.31e-12,1;UBERON:0005623,4.31e-12,1;UBERON:0002331,9.23e-11,10;UBERON:0000358,9.23e-11,10;UBERON:0000307,9.23e-11,10;UBERON:0000091,9.23e-11,10;UBERON:0000087,9.23e-11,10;UBERON:0007010,9.23e-11,10;UBERON:0007806,9.23e-11,10;UBERON:0008780,9.23e-11,10;UBERON:0005728,9.23e-11,10;UBERON:0000178,2.43e-07,15;UBERON:0000179,2.43e-07,15;UBERON:0000463,2.43e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.809364721840658,0.280901613404497,0,0,0,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0,0,0,0.427114777637135,0.211931901159562,0,0.103052529238439,0,0,0,0,1.00973509697646,1.56484827691909,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22587722705226,0,0,0,0,0,0,0,6.26254722061686,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.93042257361244,7.04314451995066,9.08470960697462,0,0,0,1.45963831372533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89176089707246,0,1.14580212005842,0,0,0,0.223171457441873,9.4728696206284,0,1.16495949527454,0,0,0,0,0.508039992394707,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0.414239055347196,0.496166021811951,13.8328142328561,10.1087856656144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,1.9998739585493,0,4.99423441016365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01925687133347,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0.672791175483681,0,0.202117188958219,0.217716747896961,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.809364721840658,0.280901613404497,0,0,0,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0,0,0,0.427114777637135,0.211931901159562,0,0.103052529238439,0,0,0,0,1.00973509697646,1.56484827691909,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22587722705226,0,0,0,0,0,0,0,6.26254722061686,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.93042257361244,7.04314451995066,9.08470960697462,0,0,0,1.45963831372533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89176089707246,0,1.14580212005842,0,0,0,0.223171457441873,9.4728696206284,0,1.16495949527454,0,0,0,0,0.508039992394707,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0.414239055347196,0.496166021811951,13.8328142328561,10.1087856656144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,1.9998739585493,0,4.99423441016365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01925687133347,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0.672791175483681,0,0.202117188958219,0.217716747896961,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p4@CADM1 | |||
}} | }} |
Latest revision as of 07:37, 25 September 2015
Short description: | p4@CADM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CADM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000543375_5end |
EntrezGene: | CADM1 |
HGNC: | 5951 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 3.08e-12 | 1 |
lymphoid lineage restricted progenitor cell | 8.27e-10 | 52 |
lymphocyte | 1.30e-09 | 53 |
common lymphoid progenitor | 1.30e-09 | 53 |
T cell | 2.70e-07 | 25 |
pro-T cell | 2.70e-07 | 25 |
mature B cell | 9.54e-07 | 2 |
pre-B-II cell | 9.54e-07 | 2 |
transitional stage B cell | 9.54e-07 | 2 |
small pre-B-II cell | 9.54e-07 | 2 |
immature B cell | 9.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
stroma of bone marrow | 2.20e-12 | 1 |
pulmonary valve | 4.31e-12 | 1 |
semi-lunar valve | 4.31e-12 | 1 |
umbilical cord | 9.23e-11 | 10 |
blastocyst | 9.23e-11 | 10 |
blastula | 9.23e-11 | 10 |
bilaminar disc | 9.23e-11 | 10 |
inner cell mass | 9.23e-11 | 10 |
cleaving embryo | 9.23e-11 | 10 |
connecting stalk | 9.23e-11 | 10 |
inner cell mass derived epiblast | 9.23e-11 | 10 |
extraembryonic mesoderm | 9.23e-11 | 10 |
blood | 2.43e-07 | 15 |
haemolymphatic fluid | 2.43e-07 | 15 |
organism substance | 2.43e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.45e-27 | 10 |
bone marrow cancer | 1.57e-12 | 1 |
myeloma | 1.57e-12 | 1 |
non-Hodgkin lymphoma | 2.46e-12 | 1 |
cutaneous T cell lymphoma | 2.46e-12 | 1 |
mycosis fungoides | 2.46e-12 | 1 |
lymphatic system cancer | 3.08e-12 | 1 |
lymphosarcoma | 3.08e-12 | 1 |
hematologic cancer | 5.16e-10 | 51 |
immune system cancer | 5.16e-10 | 51 |