FFCP PHASE1:Mm9::chr19:4615518..4615539,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=225875 | |EntrezGene=225875 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q80XU8 | |UniProt=Q80XU8 | ||
|association_with_transcript=-16bp_to_ENSMUST00000053597,uc008gah.2_5end | |association_with_transcript=-16bp_to_ENSMUST00000053597,uc008gah.2_5end | ||
|cluster_id=chr19:4615518..4615539,- | |||
|description=CAGE_peak_5_at_Lrfn4_5end | |description=CAGE_peak_5_at_Lrfn4_5end | ||
|id=chr19:4615518..4615539,- | |id=chr19:4615518..4615539,- | ||
|ontology_enrichment_celltype=CL:0000055!1.15e-10!50;CL:0000221!1.29e-10!44;CL:0000133!1.29e-10!44;CL:0002319!3.21e-10!43;CL:0002321!1.19e-09!70;CL:0000220!1.19e-09!70;CL:0000393!3.61e-09!39;CL:0000211!3.61e-09!39;CL:0000540!5.60e-08!33;CL:0000047!5.60e-08!33;CL:0000031!5.60e-08!33;CL:0000404!5.60e-08!33 | |ontology_enrichment_celltype=CL:0000055!1.15e-10!50;CL:0000221!1.29e-10!44;CL:0000133!1.29e-10!44;CL:0002319!3.21e-10!43;CL:0002321!1.19e-09!70;CL:0000220!1.19e-09!70;CL:0000393!3.61e-09!39;CL:0000211!3.61e-09!39;CL:0000540!5.60e-08!33;CL:0000047!5.60e-08!33;CL:0000031!5.60e-08!33;CL:0000404!5.60e-08!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.26e-11,44;CL:0000133,1.26e-11,44;CL:0002321,3.10e-11,70;CL:0002319,3.39e-11,43;CL:0000393,5.97e-10,39;CL:0000211,5.97e-10,39;CL:0000540,8.83e-09,33;CL:0000047,8.83e-09,33;CL:0000031,8.83e-09,33;CL:0000404,8.83e-09,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.46e-15!75;UBERON:0001016!7.46e-15!75;UBERON:0004121!1.16e-14!102;UBERON:0000924!1.16e-14!102;UBERON:0006601!1.16e-14!102;UBERON:0001017!5.23e-14!73;UBERON:0005743!5.23e-14!73;UBERON:0002346!2.36e-10!71;UBERON:0003075!2.36e-10!71;UBERON:0007284!2.36e-10!71;UBERON:0002020!2.64e-10!34;UBERON:0001049!2.83e-10!52;UBERON:0005068!2.83e-10!52;UBERON:0006241!2.83e-10!52;UBERON:0007135!2.83e-10!52;UBERON:0003056!1.13e-09!49;UBERON:0002780!5.16e-09!39;UBERON:0001890!5.16e-09!39;UBERON:0006240!5.16e-09!39;UBERON:0003080!6.14e-09!40;UBERON:0000033!8.33e-09!63;UBERON:0002791!3.67e-08!29;UBERON:0003528!3.67e-08!29;UBERON:0001893!3.67e-08!29;UBERON:0000956!4.88e-08!21;UBERON:0001869!4.88e-08!21;UBERON:0000203!4.88e-08!21;UBERON:0000955!1.03e-07!50;UBERON:0006238!1.03e-07!50;UBERON:0002616!1.08e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.70e-15,75;UBERON:0004121,5.11e-15,95;UBERON:0000924,5.11e-15,95;UBERON:0006601,5.11e-15,95;UBERON:0001017,3.66e-14,73;UBERON:0010371,9.46e-12,73;UBERON:0002346,3.29e-11,64;UBERON:0003075,3.29e-11,64;UBERON:0007284,3.29e-11,64;UBERON:0002020,7.49e-11,34;UBERON:0001049,5.51e-10,52;UBERON:0005068,5.51e-10,52;UBERON:0006241,5.51e-10,52;UBERON:0007135,5.51e-10,52;UBERON:0003056,1.38e-09,49;UBERON:0000073,1.59e-09,54;UBERON:0002780,3.22e-09,39;UBERON:0001890,3.22e-09,39;UBERON:0006240,3.22e-09,39;UBERON:0003080,3.83e-09,40;UBERON:0010314,1.05e-08,92;UBERON:0003528,1.48e-08,29;UBERON:0002791,1.48e-08,29;UBERON:0001893,1.48e-08,29;UBERON:0000956,2.75e-08,21;UBERON:0001869,2.75e-08,21;UBERON:0000203,2.75e-08,21;UBERON:0000955,4.11e-08,47;UBERON:0006238,4.11e-08,47;UBERON:0002616,4.26e-08,46 | |||
|phase1_expression=2.08193501236232,0.348975407639361,0.454999239389536,0,0,2.18243053485457,1.40167584357315,0,0,0.234064526321993,0,0.159544317990673,0,0,0,0,0,0,0,0,0.595303031057488,0.695036658406197,0.783599367416806,0.95995453676044,1.14704640533585,0,0.430761996159075,0.430942465371778,0.760093677825496,1.76421090831952,3.32595765982957,1.27006134691926,3.69038872550742,0,1.73310971850765,1.16364251750945,3.06254034393554,0,0,0,0,0,0,3.02152363141385,2.83855407414641,2.20256102594018,1.56478268869608,4.36050312760893,1.97717564461025,1.55543919259427,1.81982348112971,2.87505128729943,0,0,0,4.3734104126111,2.29226751951005,0.515672092277442,6.67644320836673,1.5869729378161,3.1691570175309,3.38844532069132,0.889294796111139,1.3498495759221,1.97773272513395,1.4209602298922,1.49800055259202,4.2264013585371,4.04389488003063,4.99521971827255,3.78584930432488,3.14216082844184,3.75476519617743,3.79721477566358,4.12135525378416,1.83843757322004,0,1.14918604276669,1.68967186581868,3.95658863190582,4.48289453651807,6.77187381723788,0.558365998002762,0,1.06958773443767,3.53554302568401,2.84743361598206,3.16879057903011,3.18050011999373,3.02286240427142,0.869593466105033,0,0,0,0,0,0.421333260395256,6.47635225796619,7.01422212427746,6.36011234118612,3.09855523508697,6.41632387071589,7.64415719119937,7.11066703153331,3.24736561516821,3.29367825117628,3.0331466700887,0.11418387971906,0,0.29688427812965,1.90833859442749,1.21786191324856,1.15307748628029,0.301445281105245,1.76383060703557,0.628332956648377,0.988779870937496,0.289198713839823,0,1.7794353494215,0.220841518460394,1.45462575940567,1.86391761218122,0.878342391034642,1.8850203613211,1.02182822083437,0.958520996047362,0.599902730993408,0.381210681219194,1.49790639404823,1.37250180845588,6.03140890141749,3.12883776346098,4.34716277461562,0.83115217823824,2.75810147215188,1.73126918545538,0.622034853050465,0.505445516867349,0.631325567659422,2.21204753036596,2.06911893990126,1.44049703844279,1.9591626318643,3.53789795586905,2.17793324484245,2.52994656311268,0.776110112217047,2.37124792226126,3.02569728268511,2.28736461413134,2.41115305670332,1.94633074457919,1.74126083261083,1.64625709126355,1.19420560091096,0.702213187313235,0.772043721344145,0.852490498186778,1.86413195281952,0.938104239924385,1.08037236876609,1.65721314909647,1.57411385397923,1.07986979021165,1.62773761325285,0.536546802799238,0.934122738937356,1.31647879930784,1.14917224855367,0.486412857275134,1.60819986167866,1.97595103761946,1.34206418760372,5.04695876553905,8.64398743985989,0,0,2.13288250535234,1.62565670302307,2.44848176511977,1.61346819698674,2.00140239460383,2.66315876557583,0.474529061544512,0.658795818896044,1.75934646160189,0.596869416123452,1.9496408711912,0,0.864552199498777,1.1948476395262,3.98302592001472,1.94222471436539,0,3.86937522906097,2.52138233317913,2.87556861550306,2.33975187359752,0.442830443938806,0.470996183524124,0.616985819609003,0,0.500535317148282,0.786235980452812,0,0.202860121388503,0,0.25462585178142,0,0.324270453550071,0,0,0.372140947668503,0,0.505157755894224,0,0,0.739012760666419,1.89491411770485,2.44447464663039,2.20668611507745,0.938760993154008,1.84256883185997,0.952174563544055,1.17080188714679,0.315270288212382,2.87904096543407,1.11618338060241,1.47476983244164,0.172684981865896,0.433947175744535,0,0.54390568381871,0.491764273019036,1.93155722413313,0.481651769963376,0.937693492737625,3.44263385291018,0.252470927204373,2.83957397474631,1.17131623288992,3.23135096599198,1.91175038362042,4.67877215573028,2.83076530788832,2.42886421004937,3.50707029493574,1.58115111178609,1.60660658210904,0.709700426041343,3.5613120733451,1.30309567482861,0.494910368917606,0,2.18502572539483,1.51161778482376,1.50884063804718,1.47650946440386,1.53717573971964,1.80899805217755,0.363533729477506,2.13898427030833,0.632073515871632,1.05418608574999,0,1.02131881726136,2.16073312837572,2.71653235943784,1.07168517515796,1.41872186913819,3.21063871683727,2.13913726782757,3.34911444026059,0.23467170806371,0.63549621259146,0.882113592219848,0.8244312647074,1.77610869365496,2.35220407219808,1.79058516004705,2.1338316966858,0.582961673259701,1.11255181206306,0.170870880797853,1.03193433981611,0.740778109478847,0.188368457004691,0.136694227721025,0.228778173206523,0.339956859987711,0.559805809294632,0.829199842826543,0.954670618015114,2.05618395827738,1.01659733563424,2.05210147561422,1.25452977608681,0.655087691238533,1.61837215661785,2.56225712748541,1.83229159388821,1.55537967950151,1.24267862617385,0,2.69129782879162,1.82004339502807,1.55560950675238,2.19571699912143,1.18269287843545,1.64300134104056,2.0832701575032,0.734015410979976,0,0,0,1.01362607645082,1.54066435747241,0.649604114888975,1.07416017400489,0.198681354781265,0.240390899039938,0.295379054349154,0.100966449948148,0.15241361331,0,0.194915761479505,0.288635524920988,0.116876902181569,0.906921534460845,0,0,0,0.579568782096571,1.68914227906064,0.36630324853453,1.92931541171159,0.501572104035363,3.3885110557024,1.84130094602871,1.71868654031819,3.09335728218638,0.685082519770642,4.5323633843382,3.37511250115903,2.70192721934532,3.17199686288943,2.5888015587591,0.830298780673413,3.59122386060928,1.87806966329548,3.16038732188782,1.25767897576789,0.735374033800057,1.11123363900808,0.824140228955577,1.92551525755089,0.505394423527595,1.77435509923168,1.32038438970253,1.21733959710847,1.40855335290712,1.14870937911227,1.42888107384922,1.97003354106254,1.35036454324594,0.824171801606613,1.32479028120958,1.37147700954166,1.06485483695602,1.43061713968393,1.74415699958794,1.12931256498397,1.35383372626682,0.182927972872773,1.8414879800649,0.679020569229309,1.68342681497322,1.30498519936592,1.57607171800902,2.45538625901814,1.54936841185966,2.70069255373598,4.49659040288303,1.63752125911786,3.00819475667618,1.91288332068843,1.54413993383661,0.927471342481686 | |phase1_expression=2.08193501236232,0.348975407639361,0.454999239389536,0,0,2.18243053485457,1.40167584357315,0,0,0.234064526321993,0,0.159544317990673,0,0,0,0,0,0,0,0,0.595303031057488,0.695036658406197,0.783599367416806,0.95995453676044,1.14704640533585,0,0.430761996159075,0.430942465371778,0.760093677825496,1.76421090831952,3.32595765982957,1.27006134691926,3.69038872550742,0,1.73310971850765,1.16364251750945,3.06254034393554,0,0,0,0,0,0,3.02152363141385,2.83855407414641,2.20256102594018,1.56478268869608,4.36050312760893,1.97717564461025,1.55543919259427,1.81982348112971,2.87505128729943,0,0,0,4.3734104126111,2.29226751951005,0.515672092277442,6.67644320836673,1.5869729378161,3.1691570175309,3.38844532069132,0.889294796111139,1.3498495759221,1.97773272513395,1.4209602298922,1.49800055259202,4.2264013585371,4.04389488003063,4.99521971827255,3.78584930432488,3.14216082844184,3.75476519617743,3.79721477566358,4.12135525378416,1.83843757322004,0,1.14918604276669,1.68967186581868,3.95658863190582,4.48289453651807,6.77187381723788,0.558365998002762,0,1.06958773443767,3.53554302568401,2.84743361598206,3.16879057903011,3.18050011999373,3.02286240427142,0.869593466105033,0,0,0,0,0,0.421333260395256,6.47635225796619,7.01422212427746,6.36011234118612,3.09855523508697,6.41632387071589,7.64415719119937,7.11066703153331,3.24736561516821,3.29367825117628,3.0331466700887,0.11418387971906,0,0.29688427812965,1.90833859442749,1.21786191324856,1.15307748628029,0.301445281105245,1.76383060703557,0.628332956648377,0.988779870937496,0.289198713839823,0,1.7794353494215,0.220841518460394,1.45462575940567,1.86391761218122,0.878342391034642,1.8850203613211,1.02182822083437,0.958520996047362,0.599902730993408,0.381210681219194,1.49790639404823,1.37250180845588,6.03140890141749,3.12883776346098,4.34716277461562,0.83115217823824,2.75810147215188,1.73126918545538,0.622034853050465,0.505445516867349,0.631325567659422,2.21204753036596,2.06911893990126,1.44049703844279,1.9591626318643,3.53789795586905,2.17793324484245,2.52994656311268,0.776110112217047,2.37124792226126,3.02569728268511,2.28736461413134,2.41115305670332,1.94633074457919,1.74126083261083,1.64625709126355,1.19420560091096,0.702213187313235,0.772043721344145,0.852490498186778,1.86413195281952,0.938104239924385,1.08037236876609,1.65721314909647,1.57411385397923,1.07986979021165,1.62773761325285,0.536546802799238,0.934122738937356,1.31647879930784,1.14917224855367,0.486412857275134,1.60819986167866,1.97595103761946,1.34206418760372,5.04695876553905,8.64398743985989,0,0,2.13288250535234,1.62565670302307,2.44848176511977,1.61346819698674,2.00140239460383,2.66315876557583,0.474529061544512,0.658795818896044,1.75934646160189,0.596869416123452,1.9496408711912,0,0.864552199498777,1.1948476395262,3.98302592001472,1.94222471436539,0,3.86937522906097,2.52138233317913,2.87556861550306,2.33975187359752,0.442830443938806,0.470996183524124,0.616985819609003,0,0.500535317148282,0.786235980452812,0,0.202860121388503,0,0.25462585178142,0,0.324270453550071,0,0,0.372140947668503,0,0.505157755894224,0,0,0.739012760666419,1.89491411770485,2.44447464663039,2.20668611507745,0.938760993154008,1.84256883185997,0.952174563544055,1.17080188714679,0.315270288212382,2.87904096543407,1.11618338060241,1.47476983244164,0.172684981865896,0.433947175744535,0,0.54390568381871,0.491764273019036,1.93155722413313,0.481651769963376,0.937693492737625,3.44263385291018,0.252470927204373,2.83957397474631,1.17131623288992,3.23135096599198,1.91175038362042,4.67877215573028,2.83076530788832,2.42886421004937,3.50707029493574,1.58115111178609,1.60660658210904,0.709700426041343,3.5613120733451,1.30309567482861,0.494910368917606,0,2.18502572539483,1.51161778482376,1.50884063804718,1.47650946440386,1.53717573971964,1.80899805217755,0.363533729477506,2.13898427030833,0.632073515871632,1.05418608574999,0,1.02131881726136,2.16073312837572,2.71653235943784,1.07168517515796,1.41872186913819,3.21063871683727,2.13913726782757,3.34911444026059,0.23467170806371,0.63549621259146,0.882113592219848,0.8244312647074,1.77610869365496,2.35220407219808,1.79058516004705,2.1338316966858,0.582961673259701,1.11255181206306,0.170870880797853,1.03193433981611,0.740778109478847,0.188368457004691,0.136694227721025,0.228778173206523,0.339956859987711,0.559805809294632,0.829199842826543,0.954670618015114,2.05618395827738,1.01659733563424,2.05210147561422,1.25452977608681,0.655087691238533,1.61837215661785,2.56225712748541,1.83229159388821,1.55537967950151,1.24267862617385,0,2.69129782879162,1.82004339502807,1.55560950675238,2.19571699912143,1.18269287843545,1.64300134104056,2.0832701575032,0.734015410979976,0,0,0,1.01362607645082,1.54066435747241,0.649604114888975,1.07416017400489,0.198681354781265,0.240390899039938,0.295379054349154,0.100966449948148,0.15241361331,0,0.194915761479505,0.288635524920988,0.116876902181569,0.906921534460845,0,0,0,0.579568782096571,1.68914227906064,0.36630324853453,1.92931541171159,0.501572104035363,3.3885110557024,1.84130094602871,1.71868654031819,3.09335728218638,0.685082519770642,4.5323633843382,3.37511250115903,2.70192721934532,3.17199686288943,2.5888015587591,0.830298780673413,3.59122386060928,1.87806966329548,3.16038732188782,1.25767897576789,0.735374033800057,1.11123363900808,0.824140228955577,1.92551525755089,0.505394423527595,1.77435509923168,1.32038438970253,1.21733959710847,1.40855335290712,1.14870937911227,1.42888107384922,1.97003354106254,1.35036454324594,0.824171801606613,1.32479028120958,1.37147700954166,1.06485483695602,1.43061713968393,1.74415699958794,1.12931256498397,1.35383372626682,0.182927972872773,1.8414879800649,0.679020569229309,1.68342681497322,1.30498519936592,1.57607171800902,2.45538625901814,1.54936841185966,2.70069255373598,4.49659040288303,1.63752125911786,3.00819475667618,1.91288332068843,1.54413993383661,0.927471342481686 | ||
|short_description=p5@Lrfn4 | |short_description=p5@Lrfn4 | ||
}} | }} |
Latest revision as of 20:56, 25 September 2015
Short description: | p5@Lrfn4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lrfn4_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_ENSMUST00000053597, uc008gah.2_5end |
EntrezGene: | Lrfn4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.26e-11 | 44 |
neurectodermal cell | 1.26e-11 | 44 |
embryonic cell | 3.10e-11 | 70 |
neural cell | 3.39e-11 | 43 |
electrically responsive cell | 5.97e-10 | 39 |
electrically active cell | 5.97e-10 | 39 |
neuron | 8.83e-09 | 33 |
neuronal stem cell | 8.83e-09 | 33 |
neuroblast | 8.83e-09 | 33 |
electrically signaling cell | 8.83e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.70e-15 | 75 |
ectoderm-derived structure | 5.11e-15 | 95 |
ectoderm | 5.11e-15 | 95 |
presumptive ectoderm | 5.11e-15 | 95 |
central nervous system | 3.66e-14 | 73 |
ecto-epithelium | 9.46e-12 | 73 |
neurectoderm | 3.29e-11 | 64 |
neural plate | 3.29e-11 | 64 |
presumptive neural plate | 3.29e-11 | 64 |
gray matter | 7.49e-11 | 34 |
neural tube | 5.51e-10 | 52 |
neural rod | 5.51e-10 | 52 |
future spinal cord | 5.51e-10 | 52 |
neural keel | 5.51e-10 | 52 |
pre-chordal neural plate | 1.38e-09 | 49 |
regional part of nervous system | 1.59e-09 | 54 |
regional part of forebrain | 3.22e-09 | 39 |
forebrain | 3.22e-09 | 39 |
future forebrain | 3.22e-09 | 39 |
anterior neural tube | 3.83e-09 | 40 |
structure with developmental contribution from neural crest | 1.05e-08 | 92 |
brain grey matter | 1.48e-08 | 29 |
regional part of telencephalon | 1.48e-08 | 29 |
telencephalon | 1.48e-08 | 29 |
cerebral cortex | 2.75e-08 | 21 |
cerebral hemisphere | 2.75e-08 | 21 |
pallium | 2.75e-08 | 21 |
brain | 4.11e-08 | 47 |
future brain | 4.11e-08 | 47 |
regional part of brain | 4.26e-08 | 46 |