FFCP PHASE1:Mm9::chr7:137836046..137836089,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=57752 | |EntrezGene=57752 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |MCL_coexpression_id=22 | ||
|TSSclassifier=NA | |||
|UniProt=E9QL08,Q9JJG0 | |UniProt=E9QL08,Q9JJG0 | ||
|association_with_transcript=0bp_to_ENSMUST00000033141,NM_021314,uc009kak.1,uc009kal.1,uc009kam.1_5end | |association_with_transcript=0bp_to_ENSMUST00000033141,NM_021314,uc009kak.1,uc009kal.1,uc009kam.1_5end | ||
|cluster_id=chr7:137836046..137836089,+ | |||
|description=CAGE_peak_5_at_Tacc2_5end | |description=CAGE_peak_5_at_Tacc2_5end | ||
|id=chr7:137836046..137836089,+ | |id=chr7:137836046..137836089,+ | ||
|ontology_enrichment_celltype=CL:0000540!2.66e-11!33;CL:0000047!2.66e-11!33;CL:0000031!2.66e-11!33;CL:0000404!2.66e-11!33;CL:0000393!5.39e-09!39;CL:0000211!5.39e-09!39;CL:0002319!7.30e-09!43;CL:0000221!1.08e-08!44;CL:0000133!1.08e-08!44;CL:0000117!6.07e-08!23;CL:0000337!6.07e-08!23;CL:0000055!8.39e-07!50 | |ontology_enrichment_celltype=CL:0000540!2.66e-11!33;CL:0000047!2.66e-11!33;CL:0000031!2.66e-11!33;CL:0000404!2.66e-11!33;CL:0000393!5.39e-09!39;CL:0000211!5.39e-09!39;CL:0002319!7.30e-09!43;CL:0000221!1.08e-08!44;CL:0000133!1.08e-08!44;CL:0000117!6.07e-08!23;CL:0000337!6.07e-08!23;CL:0000055!8.39e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.75e-12,33;CL:0000047,3.75e-12,33;CL:0000031,3.75e-12,33;CL:0000404,3.75e-12,33;CL:0000393,1.01e-08,39;CL:0000211,1.01e-08,39;CL:0000117,2.26e-08,23;CL:0000337,2.26e-08,23;CL:0002319,2.99e-08,43;CL:0000221,8.88e-08,44;CL:0000133,8.88e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.13e-21!73;UBERON:0005743!6.13e-21!73;UBERON:0000073!1.11e-19!75;UBERON:0001016!1.11e-19!75;UBERON:0002346!1.44e-16!71;UBERON:0003075!1.44e-16!71;UBERON:0007284!1.44e-16!71;UBERON:0004121!1.57e-16!102;UBERON:0000924!1.57e-16!102;UBERON:0006601!1.57e-16!102;UBERON:0001049!4.08e-16!52;UBERON:0005068!4.08e-16!52;UBERON:0006241!4.08e-16!52;UBERON:0007135!4.08e-16!52;UBERON:0003056!8.00e-16!49;UBERON:0000153!6.43e-15!94;UBERON:0000033!1.30e-14!63;UBERON:0003080!3.92e-14!40;UBERON:0000955!4.11e-14!50;UBERON:0006238!4.11e-14!50;UBERON:0002780!5.14e-14!39;UBERON:0001890!5.14e-14!39;UBERON:0006240!5.14e-14!39;UBERON:0002616!1.71e-13!49;UBERON:0007811!3.73e-13!86;UBERON:0002020!5.14e-13!34;UBERON:0002791!1.49e-11!29;UBERON:0003528!1.49e-11!29;UBERON:0001893!1.49e-11!29;UBERON:0000956!1.09e-09!21;UBERON:0001869!1.09e-09!21;UBERON:0000203!1.09e-09!21;UBERON:0000468!3.31e-08!333;UBERON:0002619!3.46e-07!17 | |ontology_enrichment_uberon=UBERON:0001017!6.13e-21!73;UBERON:0005743!6.13e-21!73;UBERON:0000073!1.11e-19!75;UBERON:0001016!1.11e-19!75;UBERON:0002346!1.44e-16!71;UBERON:0003075!1.44e-16!71;UBERON:0007284!1.44e-16!71;UBERON:0004121!1.57e-16!102;UBERON:0000924!1.57e-16!102;UBERON:0006601!1.57e-16!102;UBERON:0001049!4.08e-16!52;UBERON:0005068!4.08e-16!52;UBERON:0006241!4.08e-16!52;UBERON:0007135!4.08e-16!52;UBERON:0003056!8.00e-16!49;UBERON:0000153!6.43e-15!94;UBERON:0000033!1.30e-14!63;UBERON:0003080!3.92e-14!40;UBERON:0000955!4.11e-14!50;UBERON:0006238!4.11e-14!50;UBERON:0002780!5.14e-14!39;UBERON:0001890!5.14e-14!39;UBERON:0006240!5.14e-14!39;UBERON:0002616!1.71e-13!49;UBERON:0007811!3.73e-13!86;UBERON:0002020!5.14e-13!34;UBERON:0002791!1.49e-11!29;UBERON:0003528!1.49e-11!29;UBERON:0001893!1.49e-11!29;UBERON:0000956!1.09e-09!21;UBERON:0001869!1.09e-09!21;UBERON:0000203!1.09e-09!21;UBERON:0000468!3.31e-08!333;UBERON:0002619!3.46e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.57e-20,73;UBERON:0001016,4.94e-19,75;UBERON:0002346,3.09e-18,64;UBERON:0003075,3.09e-18,64;UBERON:0007284,3.09e-18,64;UBERON:0003056,4.99e-16,49;UBERON:0001049,9.19e-16,52;UBERON:0005068,9.19e-16,52;UBERON:0006241,9.19e-16,52;UBERON:0007135,9.19e-16,52;UBERON:0004121,2.06e-15,95;UBERON:0000924,2.06e-15,95;UBERON:0006601,2.06e-15,95;UBERON:0000073,1.23e-14,54;UBERON:0000955,1.29e-14,47;UBERON:0006238,1.29e-14,47;UBERON:0003080,3.34e-14,40;UBERON:0002780,4.64e-14,39;UBERON:0001890,4.64e-14,39;UBERON:0006240,4.64e-14,39;UBERON:0002616,6.30e-14,46;UBERON:0010371,1.05e-13,73;UBERON:0002020,3.94e-13,34;UBERON:0003528,1.78e-11,29;UBERON:0002791,1.78e-11,29;UBERON:0001893,1.78e-11,29;UBERON:0010314,3.03e-11,92;UBERON:0000956,1.12e-09,21;UBERON:0001869,1.12e-09,21;UBERON:0000203,1.12e-09,21;UBERON:0002619,6.10e-07,17 | |||
|phase1_expression=2.08193501236232,0,0,0,0,0,0,1.16210991097419,0,0.234064526321993,0,0.0797721589953364,1.19840510951844,2.71003247498892,0,0.202475267389826,0,0,0,0,0.935476191661768,0.992909512008853,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,1.01376931219515,0.734187008646726,3.9119567217402,0.436050312760893,0.878744730937887,0.194429899074283,0.699932108126813,1.43752564364972,0,0,0.336093799142464,0.514518872071894,0,0.515672092277442,7.28339259094552,5.28990979272033,8.87363964908651,2.71075625655306,0,0,0,0,1.79760066311043,0.768436610643109,15.2423730093462,18.0907957364465,18.5085965989216,2.85650984403804,1.54607978666129,12.3715707207104,11.4056110511701,9.19218786610021,0,0.510749352340751,2.76491759861238,6.06676923558892,5.48925861614458,10.4182674111352,1.3959149950069,0.56276261003168,1.22238598221448,5.30331453852602,4.41352210477219,2.98239113320481,0,0.377857800533928,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0.258937883647172,0,2.94925055502431,0.913396434936424,0.922461989024234,0.904335843315735,0.823120949949934,0.125666591329675,0.988779870937496,0,0,0.485300549842228,0.220841518460394,0,0,3.22058876712702,3.14170060220183,0,0,0,0,2.39665023047716,3.20250421973039,12.1884721549478,4.51943232499919,3.58001640262463,2.70124457927428,2.27137768294861,1.73126918545538,0.124406970610093,0.252722758433675,0.210441855886474,3.3831315170303,2.75882525320168,4.86167750474443,2.26057226753573,3.26575195926374,3.33095672740609,3.65436725782942,1.29351685369508,5.17363183038821,3.40390944302075,2.99116911078713,3.72632745126877,3.61461423993277,1.0447564995665,2.05782136407943,1.59227413454795,0,0,0,2.89976081549703,3.51789089971644,1.80062061461015,2.60419209143731,1.96764231747404,1.3884040159864,1.86027155800326,1.3413670069981,1.16765342367169,0.493679549740441,0.820837320395476,0.972825714550269,0.438599962275997,0,0.402619256281115,6.30869845692382,27.3726268928897,0,0,4.05247676016945,3.94802342162745,3.60828891701861,0.605050573870028,0.667134131534611,0.380451252225118,0,0.494096864172033,0.502670417600539,0.596869416123452,0,0.898819408654221,0.216138049874694,0,1.70701110857774,2.74196430263349,5.63538678365402,1.83286195060783,2.13347735884388,1.8936671370386,1.64414996523069,0.442830443938806,0.31399745568275,0.123397163921801,0,1.66845105716094,1.17935397067922,0.449724224769707,0.405720242777006,0,0,0.287696137450811,0,0.274561413188081,2.87536413054709,0.372140947668503,1.24815069245824,0,0,0,0,2.08440552947533,2.11854469374634,1.69745085775188,1.40814148973101,1.34005005953453,1.42826184531608,0.975668239288994,2.20689201748667,0.8858587585951,0.956728611944923,0,0.518054945597687,0,0,0,0,0.275936746304732,0.963303539926752,1.52375192569864,0,0,2.52406575533005,1.95219372148319,2.36965737506079,5.9742199488138,4.45597348164788,4.52922449262132,4.45291771842384,4.38383786866968,5.53402889125133,9.3183181762324,0.709700426041343,1.95872164033981,2.76907830901079,0.494910368917606,0,2.18502572539483,0.604647113929502,0.943025398779491,1.18120757152309,1.53717573971964,1.03371317267288,1.45413491791002,0,0,0,0,0.340439605753788,4.14140516272013,3.75140182969988,3.42939256050548,3.19212420556092,3.56737635204141,2.63278432963394,4.26250928760439,0.23467170806371,0.63549621259146,0,0.32977250588296,0.322928853391811,0.844380948994182,0.716234064018819,0.164140899745061,0,2.03967832211561,0,1.857481811669,0.555583582109135,0.188368457004691,0.136694227721025,0,0,0,0,0,4.11236791655476,2.84647253977588,1.94409613479242,1.25452977608681,1.52853794622324,0.404593039154462,0.743881101528023,0,0,0,0,2.69129782879162,1.82004339502807,2.52786544847262,2.58319646955462,2.19642963138012,2.93393096614385,1.17183946359555,0.629156066554265,0,0,0,1.01362607645082,0.718976700153791,1.94881234466693,3.04345382634718,4.17230845040656,3.36547258655913,2.06765338044408,3.73575864808146,2.59103142626999,2.82313318383153,4.48306251402861,3.84847366561318,2.10378423926824,0.226730383615211,0,0,0.335769232728157,0.19318959403219,0.750729901804728,0.549454872801795,0.214368379079066,0,9.03602948187307,6.44455331110048,9.73922372846974,6.8741272937475,3.42541259885321,4.5323633843382,0.675022500231806,3.15224842256954,2.26571204492102,5.1776031175182,3.1136204275253,7.58147259461959,2.73173769206615,3.64660075602441,3.14419743941973,3.67687016900028,3.11145418922261,3.09052585858341,2.24643446714271,3.03236654116557,3.8021894983536,2.45214243801899,2.52832070168682,2.43295579138503,2.52716063404698,3.33405583898152,2.43357084484197,1.35036454324594,2.06042950401653,3.53277408322554,2.74295401908332,3.19456451086807,2.62279808942053,3.34296758254356,2.54095327121393,2.36920902096694,2.56099162021882,1.57841826862706,1.49384525230448,3.36685362994643,1.42362021749009,2.36410757701352,2.45538625901814,2.01417893541756,1.73615949883027,5.9954538705107,3.97683734357194,1.93383948643468,1.91288332068843,0.661774257358546,0.695603506861264 | |phase1_expression=2.08193501236232,0,0,0,0,0,0,1.16210991097419,0,0.234064526321993,0,0.0797721589953364,1.19840510951844,2.71003247498892,0,0.202475267389826,0,0,0,0,0.935476191661768,0.992909512008853,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,1.01376931219515,0.734187008646726,3.9119567217402,0.436050312760893,0.878744730937887,0.194429899074283,0.699932108126813,1.43752564364972,0,0,0.336093799142464,0.514518872071894,0,0.515672092277442,7.28339259094552,5.28990979272033,8.87363964908651,2.71075625655306,0,0,0,0,1.79760066311043,0.768436610643109,15.2423730093462,18.0907957364465,18.5085965989216,2.85650984403804,1.54607978666129,12.3715707207104,11.4056110511701,9.19218786610021,0,0.510749352340751,2.76491759861238,6.06676923558892,5.48925861614458,10.4182674111352,1.3959149950069,0.56276261003168,1.22238598221448,5.30331453852602,4.41352210477219,2.98239113320481,0,0.377857800533928,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0.258937883647172,0,2.94925055502431,0.913396434936424,0.922461989024234,0.904335843315735,0.823120949949934,0.125666591329675,0.988779870937496,0,0,0.485300549842228,0.220841518460394,0,0,3.22058876712702,3.14170060220183,0,0,0,0,2.39665023047716,3.20250421973039,12.1884721549478,4.51943232499919,3.58001640262463,2.70124457927428,2.27137768294861,1.73126918545538,0.124406970610093,0.252722758433675,0.210441855886474,3.3831315170303,2.75882525320168,4.86167750474443,2.26057226753573,3.26575195926374,3.33095672740609,3.65436725782942,1.29351685369508,5.17363183038821,3.40390944302075,2.99116911078713,3.72632745126877,3.61461423993277,1.0447564995665,2.05782136407943,1.59227413454795,0,0,0,2.89976081549703,3.51789089971644,1.80062061461015,2.60419209143731,1.96764231747404,1.3884040159864,1.86027155800326,1.3413670069981,1.16765342367169,0.493679549740441,0.820837320395476,0.972825714550269,0.438599962275997,0,0.402619256281115,6.30869845692382,27.3726268928897,0,0,4.05247676016945,3.94802342162745,3.60828891701861,0.605050573870028,0.667134131534611,0.380451252225118,0,0.494096864172033,0.502670417600539,0.596869416123452,0,0.898819408654221,0.216138049874694,0,1.70701110857774,2.74196430263349,5.63538678365402,1.83286195060783,2.13347735884388,1.8936671370386,1.64414996523069,0.442830443938806,0.31399745568275,0.123397163921801,0,1.66845105716094,1.17935397067922,0.449724224769707,0.405720242777006,0,0,0.287696137450811,0,0.274561413188081,2.87536413054709,0.372140947668503,1.24815069245824,0,0,0,0,2.08440552947533,2.11854469374634,1.69745085775188,1.40814148973101,1.34005005953453,1.42826184531608,0.975668239288994,2.20689201748667,0.8858587585951,0.956728611944923,0,0.518054945597687,0,0,0,0,0.275936746304732,0.963303539926752,1.52375192569864,0,0,2.52406575533005,1.95219372148319,2.36965737506079,5.9742199488138,4.45597348164788,4.52922449262132,4.45291771842384,4.38383786866968,5.53402889125133,9.3183181762324,0.709700426041343,1.95872164033981,2.76907830901079,0.494910368917606,0,2.18502572539483,0.604647113929502,0.943025398779491,1.18120757152309,1.53717573971964,1.03371317267288,1.45413491791002,0,0,0,0,0.340439605753788,4.14140516272013,3.75140182969988,3.42939256050548,3.19212420556092,3.56737635204141,2.63278432963394,4.26250928760439,0.23467170806371,0.63549621259146,0,0.32977250588296,0.322928853391811,0.844380948994182,0.716234064018819,0.164140899745061,0,2.03967832211561,0,1.857481811669,0.555583582109135,0.188368457004691,0.136694227721025,0,0,0,0,0,4.11236791655476,2.84647253977588,1.94409613479242,1.25452977608681,1.52853794622324,0.404593039154462,0.743881101528023,0,0,0,0,2.69129782879162,1.82004339502807,2.52786544847262,2.58319646955462,2.19642963138012,2.93393096614385,1.17183946359555,0.629156066554265,0,0,0,1.01362607645082,0.718976700153791,1.94881234466693,3.04345382634718,4.17230845040656,3.36547258655913,2.06765338044408,3.73575864808146,2.59103142626999,2.82313318383153,4.48306251402861,3.84847366561318,2.10378423926824,0.226730383615211,0,0,0.335769232728157,0.19318959403219,0.750729901804728,0.549454872801795,0.214368379079066,0,9.03602948187307,6.44455331110048,9.73922372846974,6.8741272937475,3.42541259885321,4.5323633843382,0.675022500231806,3.15224842256954,2.26571204492102,5.1776031175182,3.1136204275253,7.58147259461959,2.73173769206615,3.64660075602441,3.14419743941973,3.67687016900028,3.11145418922261,3.09052585858341,2.24643446714271,3.03236654116557,3.8021894983536,2.45214243801899,2.52832070168682,2.43295579138503,2.52716063404698,3.33405583898152,2.43357084484197,1.35036454324594,2.06042950401653,3.53277408322554,2.74295401908332,3.19456451086807,2.62279808942053,3.34296758254356,2.54095327121393,2.36920902096694,2.56099162021882,1.57841826862706,1.49384525230448,3.36685362994643,1.42362021749009,2.36410757701352,2.45538625901814,2.01417893541756,1.73615949883027,5.9954538705107,3.97683734357194,1.93383948643468,1.91288332068843,0.661774257358546,0.695603506861264 | ||
|short_description=p5@Tacc2 | |short_description=p5@Tacc2 | ||
}} | }} |
Latest revision as of 00:25, 26 September 2015
Short description: | p5@Tacc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Tacc2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000033141, NM_021314, uc009kak.1, uc009kal.1, uc009kam.1_5end |
EntrezGene: | Tacc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.75e-12 | 33 |
neuronal stem cell | 3.75e-12 | 33 |
neuroblast | 3.75e-12 | 33 |
electrically signaling cell | 3.75e-12 | 33 |
electrically responsive cell | 1.01e-08 | 39 |
electrically active cell | 1.01e-08 | 39 |
CNS neuron (sensu Vertebrata) | 2.26e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.26e-08 | 23 |
neural cell | 2.99e-08 | 43 |
ectodermal cell | 8.88e-08 | 44 |
neurectodermal cell | 8.88e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.57e-20 | 73 |
nervous system | 4.94e-19 | 75 |
neurectoderm | 3.09e-18 | 64 |
neural plate | 3.09e-18 | 64 |
presumptive neural plate | 3.09e-18 | 64 |
pre-chordal neural plate | 4.99e-16 | 49 |
neural tube | 9.19e-16 | 52 |
neural rod | 9.19e-16 | 52 |
future spinal cord | 9.19e-16 | 52 |
neural keel | 9.19e-16 | 52 |
ectoderm-derived structure | 2.06e-15 | 95 |
ectoderm | 2.06e-15 | 95 |
presumptive ectoderm | 2.06e-15 | 95 |
regional part of nervous system | 1.23e-14 | 54 |
brain | 1.29e-14 | 47 |
future brain | 1.29e-14 | 47 |
anterior neural tube | 3.34e-14 | 40 |
regional part of forebrain | 4.64e-14 | 39 |
forebrain | 4.64e-14 | 39 |
future forebrain | 4.64e-14 | 39 |
regional part of brain | 6.30e-14 | 46 |
ecto-epithelium | 1.05e-13 | 73 |
gray matter | 3.94e-13 | 34 |
brain grey matter | 1.78e-11 | 29 |
regional part of telencephalon | 1.78e-11 | 29 |
telencephalon | 1.78e-11 | 29 |
structure with developmental contribution from neural crest | 3.03e-11 | 92 |
cerebral cortex | 1.12e-09 | 21 |
cerebral hemisphere | 1.12e-09 | 21 |
pallium | 1.12e-09 | 21 |
regional part of cerebral cortex | 6.10e-07 | 17 |