FFCP PHASE1:Mm9::chr9:108420015..108420037,+: Difference between revisions
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{{FFCP|EntrezGene=69232|HGNC=|MCL_coexpression_id=0|UniProt=|association_with_transcript=-209bp_to_uc009rqf.1_5end|description=CAGE_peak_3_at_Qrich1_5end|id=chr9:108420015..108420037,+|ontology_enrichment_celltype=CL:0000393!9.49e-16!39;CL:0000211!9.49e-16!39;CL:0000540!2.77e-14!33;CL:0000047!2.77e-14!33;CL:0000031!2.77e-14!33;CL:0000404!2.77e-14!33;CL:0000055!2.66e-12!50;CL:0002319!2.15e-11!43;CL:0000221!4.71e-11!44;CL:0000133!4.71e-11!44;CL:0000117!7.56e-09!23;CL:0000337!7.56e-09!23;CL:0000107!8.51e-07!9|ontology_enrichment_celltype_v019_2=CL:0000393,6.10e-16,39;CL:0000211,6.10e-16,39;CL:0000540,1.87e-14,33;CL:0000047,1.87e-14,33;CL:0000031,1.87e-14,33;CL:0000404,1.87e-14,33;CL:0002319,1.59e-11,43;CL:0000221,3.50e-11,44;CL:0000133,3.50e-11,44;CL:0000117,6.02e-09,23;CL:0000337,6.02e-09,23;CL:0000107,7.23e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.39e-17!75;UBERON:0001016!2.39e-17!75;UBERON:0001017!2.40e-17!73;UBERON:0005743!2.40e-17!73;UBERON:0004121!4.12e-14!102;UBERON:0000924!4.12e-14!102;UBERON:0006601!4.12e-14!102;UBERON:0002346!3.98e-12!71;UBERON:0003075!3.98e-12!71;UBERON:0007284!3.98e-12!71;UBERON:0001049!2.27e-11!52;UBERON:0005068!2.27e-11!52;UBERON:0006241!2.27e-11!52;UBERON:0007135!2.27e-11!52;UBERON:0003080!1.65e-10!40;UBERON:0002780!2.59e-10!39;UBERON:0001890!2.59e-10!39;UBERON:0006240!2.59e-10!39;UBERON:0003056!7.63e-10!49;UBERON:0002020!1.16e-09!34;UBERON:0000955!2.67e-09!50;UBERON:0006238!2.67e-09!50;UBERON:0002616!3.32e-09!49;UBERON:0000033!2.06e-08!63;UBERON:0002791!3.05e-07!29;UBERON:0003528!3.05e-07!29;UBERON:0001893!3.05e-07!29;UBERON:0002410!8.51e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.44e-17,75;UBERON:0001017,2.46e-17,73;UBERON:0004121,1.07e-13,95;UBERON:0000924,1.07e-13,95;UBERON:0006601,1.07e-13,95;UBERON:0002346,2.30e-12,64;UBERON:0003075,2.30e-12,64;UBERON:0007284,2.30e-12,64;UBERON:0000073,1.64e-11,54;UBERON:0001049,2.67e-11,52;UBERON:0005068,2.67e-11,52;UBERON:0006241,2.67e-11,52;UBERON:0007135,2.67e-11,52;UBERON:0003080,1.11e-10,40;UBERON:0002780,1.75e-10,39;UBERON:0001890,1.75e-10,39;UBERON:0006240,1.75e-10,39;UBERON:0010371,5.38e-10,73;UBERON:0003056,6.93e-10,49;UBERON:0002020,7.98e-10,34;UBERON:0010314,3.66e-09,92;UBERON:0000955,5.09e-09,47;UBERON:0006238,5.09e-09,47;UBERON:0002616,6.31e-09,46;UBERON:0003528,2.29e-07,29;UBERON:0002791,2.29e-07,29;UBERON:0001893,2.29e-07,29;UBERON:0002410,7.23e-07,9|phase1_expression=2.88267924788629,0,0.454999239389536,0.30246421130683,0.500895729946347,0.503637815735669,0.467225281191051,0.387369970324729,2.39340827657833,2.80877431586392,1.36974374580404,1.43589886191606,1.54080656938085,0.262261207256992,1.99865857089398,0.809901069559304,0,1.26184866143295,0.959801035240171,1.69755860719212,17.6890043514225,4.36880185283895,4.17919662622297,0.639969691173627,0.68822784320151,0,0,0.646413698057667,0.570070258369122,0.504060259519861,0.443461021310609,2.54012269383853,4.92051830067656,0,0,0.332469290716985,0.204169356262369,0.418531630736908,0,0,0,0.683045484958446,0.971020706062307,2.7697299954627,2.83855407414641,5.32285581268876,1.56478268869608,2.8343270329458,1.31811709640683,1.94429899074283,2.2397827460058,1.43752564364972,1.34226084846189,0.725362142011344,2.68875039313971,2.82985379639542,3.72493471920384,3.09403255366465,9.91350658212029,4.7609188134483,4.43681982454325,2.03306719241479,1.77858959222228,0.449949858640699,0.988866362566974,0.7104801149461,1.79760066311043,1.15265491596466,4.87341177849845,3.51015439662396,2.52389953621658,3.71346279724945,7.06779331045163,2.69479758272899,2.49198224647415,5.51531271966013,3.30347642998166,2.93680877595932,1.53606533256243,6.4624280987795,6.67859798297591,6.77187381723788,1.95428099300967,3.37657566019008,4.43114918552749,5.89257170947335,5.41012387036591,5.21918448310842,2.34751199332871,2.19157524309678,1.44932244350839,0.860423876981386,1.3599426674155,1.07940638327563,0,3.13618820968135,3.23022166303029,0.852151612890289,1.29893002301434,2.12003744706204,1.54927761754349,5.13305909657271,5.09610479413291,0,0.649473123033642,1.26679932737549,0,3.65388415100992,3.36619248741323,2.52351636410202,3.46970653532272,1.82679286987285,2.53677046981664,1.50722640552623,1.76383060703557,1.50799909595611,3.46072954828123,2.31358971071859,1.76922110389975,0.970601099684455,0.662524555381181,0.484875253135222,0,0.878342391034642,0.83778682725382,0.255457055208591,0.599075622529601,1.79970819298022,1.14363204365758,2.99581278809645,0.457500602818626,2.01046963380583,4.51943232499919,3.58001640262463,3.53239675751252,1.1356888414743,2.03678727700633,1.99051152976149,5.30717792710717,0.841767423545896,3.12289063110489,3.67843367093557,3.06105620669094,3.16480117455002,2.31324097114515,2.0498195245576,1.12442069471675,1.29351685369508,2.15567992932842,4.72765200419548,4.39877810409872,2.6303487891309,1.94633074457919,2.43776516565517,1.85203922767149,3.98068533636986,1.40442637462647,3.3455227924913,1.704980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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=69232 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-209bp_to_uc009rqf.1_5end | |||
|cluster_id=chr9:108420015..108420037,+ | |||
|description=CAGE_peak_3_at_Qrich1_5end | |||
|id=chr9:108420015..108420037,+ | |||
|ontology_enrichment_celltype=CL:0000393!9.49e-16!39;CL:0000211!9.49e-16!39;CL:0000540!2.77e-14!33;CL:0000047!2.77e-14!33;CL:0000031!2.77e-14!33;CL:0000404!2.77e-14!33;CL:0000055!2.66e-12!50;CL:0002319!2.15e-11!43;CL:0000221!4.71e-11!44;CL:0000133!4.71e-11!44;CL:0000117!7.56e-09!23;CL:0000337!7.56e-09!23;CL:0000107!8.51e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,6.10e-16,39;CL:0000211,6.10e-16,39;CL:0000540,1.87e-14,33;CL:0000047,1.87e-14,33;CL:0000031,1.87e-14,33;CL:0000404,1.87e-14,33;CL:0002319,1.59e-11,43;CL:0000221,3.50e-11,44;CL:0000133,3.50e-11,44;CL:0000117,6.02e-09,23;CL:0000337,6.02e-09,23;CL:0000107,7.23e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.39e-17!75;UBERON:0001016!2.39e-17!75;UBERON:0001017!2.40e-17!73;UBERON:0005743!2.40e-17!73;UBERON:0004121!4.12e-14!102;UBERON:0000924!4.12e-14!102;UBERON:0006601!4.12e-14!102;UBERON:0002346!3.98e-12!71;UBERON:0003075!3.98e-12!71;UBERON:0007284!3.98e-12!71;UBERON:0001049!2.27e-11!52;UBERON:0005068!2.27e-11!52;UBERON:0006241!2.27e-11!52;UBERON:0007135!2.27e-11!52;UBERON:0003080!1.65e-10!40;UBERON:0002780!2.59e-10!39;UBERON:0001890!2.59e-10!39;UBERON:0006240!2.59e-10!39;UBERON:0003056!7.63e-10!49;UBERON:0002020!1.16e-09!34;UBERON:0000955!2.67e-09!50;UBERON:0006238!2.67e-09!50;UBERON:0002616!3.32e-09!49;UBERON:0000033!2.06e-08!63;UBERON:0002791!3.05e-07!29;UBERON:0003528!3.05e-07!29;UBERON:0001893!3.05e-07!29;UBERON:0002410!8.51e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.44e-17,75;UBERON:0001017,2.46e-17,73;UBERON:0004121,1.07e-13,95;UBERON:0000924,1.07e-13,95;UBERON:0006601,1.07e-13,95;UBERON:0002346,2.30e-12,64;UBERON:0003075,2.30e-12,64;UBERON:0007284,2.30e-12,64;UBERON:0000073,1.64e-11,54;UBERON:0001049,2.67e-11,52;UBERON:0005068,2.67e-11,52;UBERON:0006241,2.67e-11,52;UBERON:0007135,2.67e-11,52;UBERON:0003080,1.11e-10,40;UBERON:0002780,1.75e-10,39;UBERON:0001890,1.75e-10,39;UBERON:0006240,1.75e-10,39;UBERON:0010371,5.38e-10,73;UBERON:0003056,6.93e-10,49;UBERON:0002020,7.98e-10,34;UBERON:0010314,3.66e-09,92;UBERON:0000955,5.09e-09,47;UBERON:0006238,5.09e-09,47;UBERON:0002616,6.31e-09,46;UBERON:0003528,2.29e-07,29;UBERON:0002791,2.29e-07,29;UBERON:0001893,2.29e-07,29;UBERON:0002410,7.23e-07,9 | |||
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| |||
|short_description=p3@Qrich1 | |||
}} |
Latest revision as of 04:24, 26 September 2015
Short description: | p3@Qrich1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Qrich1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -209bp_to_uc009rqf.1_5end |
EntrezGene: | Qrich1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 6.10e-16 | 39 |
electrically active cell | 6.10e-16 | 39 |
neuron | 1.87e-14 | 33 |
neuronal stem cell | 1.87e-14 | 33 |
neuroblast | 1.87e-14 | 33 |
electrically signaling cell | 1.87e-14 | 33 |
neural cell | 1.59e-11 | 43 |
ectodermal cell | 3.50e-11 | 44 |
neurectodermal cell | 3.50e-11 | 44 |
CNS neuron (sensu Vertebrata) | 6.02e-09 | 23 |
neuroblast (sensu Vertebrata) | 6.02e-09 | 23 |
autonomic neuron | 7.23e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.44e-17 | 75 |
central nervous system | 2.46e-17 | 73 |
ectoderm-derived structure | 1.07e-13 | 95 |
ectoderm | 1.07e-13 | 95 |
presumptive ectoderm | 1.07e-13 | 95 |
neurectoderm | 2.30e-12 | 64 |
neural plate | 2.30e-12 | 64 |
presumptive neural plate | 2.30e-12 | 64 |
regional part of nervous system | 1.64e-11 | 54 |
neural tube | 2.67e-11 | 52 |
neural rod | 2.67e-11 | 52 |
future spinal cord | 2.67e-11 | 52 |
neural keel | 2.67e-11 | 52 |
anterior neural tube | 1.11e-10 | 40 |
regional part of forebrain | 1.75e-10 | 39 |
forebrain | 1.75e-10 | 39 |
future forebrain | 1.75e-10 | 39 |
ecto-epithelium | 5.38e-10 | 73 |
pre-chordal neural plate | 6.93e-10 | 49 |
gray matter | 7.98e-10 | 34 |
structure with developmental contribution from neural crest | 3.66e-09 | 92 |
brain | 5.09e-09 | 47 |
future brain | 5.09e-09 | 47 |
regional part of brain | 6.31e-09 | 46 |
brain grey matter | 2.29e-07 | 29 |
regional part of telencephalon | 2.29e-07 | 29 |
telencephalon | 2.29e-07 | 29 |
autonomic nervous system | 7.23e-07 | 9 |