FFCP PHASE1:Mm9::chr9:108481008..108481022,-: Difference between revisions
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{{FFCP|EntrezGene=83669|HGNC=|MCL_coexpression_id=964|UniProt=Q99ME2|association_with_transcript=-7bp_to_ENSMUST00000068700,NM_031392,uc009rqj.1_5end|description=CAGE_peak_4_at_Wdr6_5end|id=chr9:108481008..108481022,-|ontology_enrichment_celltype=CL:0000221!6.71e-15!44;CL:0000133!6.71e-15!44;CL:0002319!1.66e-14!43;CL:0000540!3.18e-14!33;CL:0000047!3.18e-14!33;CL:0000031!3.18e-14!33;CL:0000404!3.18e-14!33;CL:0000055!1.75e-12!50;CL:0000393!1.88e-12!39;CL:0000211!1.88e-12!39;CL:0000117!1.44e-10!23;CL:0000337!1.44e-10!23|ontology_enrichment_celltype_v019_2=CL:0000221,2.35e-15,44;CL:0000133,2.35e-15,44;CL:0002319,5.93e-15,43;CL:0000540,1.82e-14,33;CL:0000047,1.82e-14,33;CL:0000031,1.82e-14,33;CL:0000404,1.82e-14,33;CL:0000393,1.24e-12,39;CL:0000211,1.24e-12,39;CL:0000117,9.62e-11,23;CL:0000337,9.62e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.34e-26!73;UBERON:0005743!3.34e-26!73;UBERON:0000073!4.81e-24!75;UBERON:0001016!4.81e-24!75;UBERON:0002346!4.71e-23!71;UBERON:0003075!4.71e-23!71;UBERON:0007284!4.71e-23!71;UBERON:0004121!1.52e-22!102;UBERON:0000924!1.52e-22!102;UBERON:0006601!1.52e-22!102;UBERON:0000033!5.55e-17!63;UBERON:0003056!2.34e-16!49;UBERON:0001049!2.78e-16!52;UBERON:0005068!2.78e-16!52;UBERON:0006241!2.78e-16!52;UBERON:0007135!2.78e-16!52;UBERON:0000955!9.86e-15!50;UBERON:0006238!9.86e-15!50;UBERON:0002616!1.98e-14!49;UBERON:0003080!1.28e-13!40;UBERON:0002780!4.38e-13!39;UBERON:0001890!4.38e-13!39;UBERON:0006240!4.38e-13!39;UBERON:0002020!2.25e-10!34;UBERON:0000153!4.47e-10!94;UBERON:0007811!1.34e-09!86;UBERON:0002791!1.31e-07!29;UBERON:0003528!1.31e-07!29;UBERON:0001893!1.31e-07!29;UBERON:0001894!2.58e-07!10;UBERON:0006222!2.58e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.36e-26,73;UBERON:0001016,2.24e-24,75;UBERON:0002346,9.85e-21,64;UBERON:0003075,9.85e-21,64;UBERON:0007284,9.85e-21,64;UBERON:0004121,7.77e-20,95;UBERON:0000924,7.77e-20,95;UBERON:0006601,7.77e-20,95;UBERON:0000073,1.55e-17,54;UBERON:0010314,1.70e-17,92;UBERON:0003056,2.00e-16,49;UBERON:0001049,2.81e-16,52;UBERON:0005068,2.81e-16,52;UBERON:0006241,2.81e-16,52;UBERON:0007135,2.81e-16,52;UBERON:0010371,7.44e-16,73;UBERON:0003080,1.23e-13,40;UBERON:0000955,2.72e-13,47;UBERON:0006238,2.72e-13,47;UBERON:0002780,4.28e-13,39;UBERON:0001890,4.28e-13,39;UBERON:0006240,4.28e-13,39;UBERON:0002616,5.43e-13,46;UBERON:0002020,2.40e-10,34;UBERON:0003528,1.51e-07,29;UBERON:0002791,1.51e-07,29;UBERON:0001893,1.51e-07,29;UBERON:0001894,2.00e-07,10;UBERON:0006222,2.00e-07,10|phase1_expression=12.9720566154883,0,0,0.30246421130683,0,0.671517087647559,1.63528848416868,1.93684985162364,0.703943610758334,1.40438715793196,0,0.0797721589953364,0.513602189793617,0.874204024189974,1.66554880907831,0.809901069559304,0.699561878128147,0.788655413395594,0.274228867211478,1.27316895539409,2.55129870453209,4.36880185283895,3.39559725880616,1.11994695955385,0.68822784320151,0.57423196411502,0.430761996159075,0.215471232685889,0.190023419456374,0,0.665191531965914,0.635030673459631,0.61506478758457,0,1.44425809875637,0.498703936075477,0.612508068787107,0,0,0,0,0,0,5.16176953699867,4.05507724878058,6.24058957349717,3.9119567217402,4.79655344036982,23.726107735323,12.2490836416799,6.7193482380174,20.125359011096,1.00669563634642,1.45072428402269,1.00828139742739,1.02903774414379,0.573066879877513,2.57836046138721,25.4918740683093,30.6814767977779,32.9592329823213,9.14880236586657,11.5608323494448,0,0.988866362566974,0,6.2916023208865,13.831858991576,4.56234294157302,4.45519596494579,3.78584930432488,26.8511925339575,28.9337788646614,5.38959516545798,3.83381884072945,3.67687514644008,20.9220173898839,10.214987046815,9.36999852863085,44.1819063896149,30.1909223887952,34.9011958273029,10.6089539620525,35.4540444319958,24.90611438762,27.6950870345248,20.9286370774681,22.7407323906867,0.151452386666368,0.226714680320357,0.579728977403356,0.860423876981386,0,1.07940638327563,0,0.448026887097336,1.54488862144927,0.852151612890289,1.81850203222008,1.41335829804136,9.01397886570755,1.28326477414318,2.54805239706646,0,1.73192832808971,2.28023878927589,1.01104889002957,0.45673551887624,0,6.53145411885229,11.7970022200972,7.91610243611567,7.14908041493781,7.83757730873637,6.82014501387088,6.6603293404728,0.247194967734374,1.15679485535929,0,1.45590164952668,1.10420759230197,0.484875253135222,0,1.46390398505774,0.628340120440365,0.255457055208591,0.599075622529601,0.599902730993408,0.889491589511453,14.6794826616726,5.49000723382352,13.5706700281894,8.69121600961382,6.64860189058859,14.1295870300501,12.6548185192851,1.62942982160506,1.99051152976149,2.0217820674694,2.52530227063769,13.9228873970093,16.5529515192101,8.46292010085141,6.0281927134286,7.55205140579739,9.35230158079403,8.62055865949505,7.76110112217047,18.3232793992916,11.9136830505726,10.381116325673,8.54863356467542,3.61461423993277,2.089512999133,1.02891068203972,9.95171334092466,0,0,0.284163499395593,7.87077935634907,5.62862543954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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=83669 | |||
|HGNC= | |||
|MCL_coexpression_id=964 | |||
|TSSclassifier=NA | |||
|UniProt=Q99ME2 | |||
|association_with_transcript=-7bp_to_ENSMUST00000068700,NM_031392,uc009rqj.1_5end | |||
|cluster_id=chr9:108481008..108481022,- | |||
|description=CAGE_peak_4_at_Wdr6_5end | |||
|id=chr9:108481008..108481022,- | |||
|ontology_enrichment_celltype=CL:0000221!6.71e-15!44;CL:0000133!6.71e-15!44;CL:0002319!1.66e-14!43;CL:0000540!3.18e-14!33;CL:0000047!3.18e-14!33;CL:0000031!3.18e-14!33;CL:0000404!3.18e-14!33;CL:0000055!1.75e-12!50;CL:0000393!1.88e-12!39;CL:0000211!1.88e-12!39;CL:0000117!1.44e-10!23;CL:0000337!1.44e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.35e-15,44;CL:0000133,2.35e-15,44;CL:0002319,5.93e-15,43;CL:0000540,1.82e-14,33;CL:0000047,1.82e-14,33;CL:0000031,1.82e-14,33;CL:0000404,1.82e-14,33;CL:0000393,1.24e-12,39;CL:0000211,1.24e-12,39;CL:0000117,9.62e-11,23;CL:0000337,9.62e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.34e-26!73;UBERON:0005743!3.34e-26!73;UBERON:0000073!4.81e-24!75;UBERON:0001016!4.81e-24!75;UBERON:0002346!4.71e-23!71;UBERON:0003075!4.71e-23!71;UBERON:0007284!4.71e-23!71;UBERON:0004121!1.52e-22!102;UBERON:0000924!1.52e-22!102;UBERON:0006601!1.52e-22!102;UBERON:0000033!5.55e-17!63;UBERON:0003056!2.34e-16!49;UBERON:0001049!2.78e-16!52;UBERON:0005068!2.78e-16!52;UBERON:0006241!2.78e-16!52;UBERON:0007135!2.78e-16!52;UBERON:0000955!9.86e-15!50;UBERON:0006238!9.86e-15!50;UBERON:0002616!1.98e-14!49;UBERON:0003080!1.28e-13!40;UBERON:0002780!4.38e-13!39;UBERON:0001890!4.38e-13!39;UBERON:0006240!4.38e-13!39;UBERON:0002020!2.25e-10!34;UBERON:0000153!4.47e-10!94;UBERON:0007811!1.34e-09!86;UBERON:0002791!1.31e-07!29;UBERON:0003528!1.31e-07!29;UBERON:0001893!1.31e-07!29;UBERON:0001894!2.58e-07!10;UBERON:0006222!2.58e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.36e-26,73;UBERON:0001016,2.24e-24,75;UBERON:0002346,9.85e-21,64;UBERON:0003075,9.85e-21,64;UBERON:0007284,9.85e-21,64;UBERON:0004121,7.77e-20,95;UBERON:0000924,7.77e-20,95;UBERON:0006601,7.77e-20,95;UBERON:0000073,1.55e-17,54;UBERON:0010314,1.70e-17,92;UBERON:0003056,2.00e-16,49;UBERON:0001049,2.81e-16,52;UBERON:0005068,2.81e-16,52;UBERON:0006241,2.81e-16,52;UBERON:0007135,2.81e-16,52;UBERON:0010371,7.44e-16,73;UBERON:0003080,1.23e-13,40;UBERON:0000955,2.72e-13,47;UBERON:0006238,2.72e-13,47;UBERON:0002780,4.28e-13,39;UBERON:0001890,4.28e-13,39;UBERON:0006240,4.28e-13,39;UBERON:0002616,5.43e-13,46;UBERON:0002020,2.40e-10,34;UBERON:0003528,1.51e-07,29;UBERON:0002791,1.51e-07,29;UBERON:0001893,1.51e-07,29;UBERON:0001894,2.00e-07,10;UBERON:0006222,2.00e-07,10 | |||
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| |||
|short_description=p4@Wdr6 | |||
}} |
Latest revision as of 04:29, 26 September 2015
Short description: | p4@Wdr6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Wdr6_5end |
Coexpression cluster: | MCL_coexpression_mm9:964 |
Association with transcript: | -7bp_to_ENSMUST00000068700, NM_031392, uc009rqj.1_5end |
EntrezGene: | Wdr6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.35e-15 | 44 |
neurectodermal cell | 2.35e-15 | 44 |
neural cell | 5.93e-15 | 43 |
neuron | 1.82e-14 | 33 |
neuronal stem cell | 1.82e-14 | 33 |
neuroblast | 1.82e-14 | 33 |
electrically signaling cell | 1.82e-14 | 33 |
electrically responsive cell | 1.24e-12 | 39 |
electrically active cell | 1.24e-12 | 39 |
CNS neuron (sensu Vertebrata) | 9.62e-11 | 23 |
neuroblast (sensu Vertebrata) | 9.62e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.36e-26 | 73 |
nervous system | 2.24e-24 | 75 |
neurectoderm | 9.85e-21 | 64 |
neural plate | 9.85e-21 | 64 |
presumptive neural plate | 9.85e-21 | 64 |
ectoderm-derived structure | 7.77e-20 | 95 |
ectoderm | 7.77e-20 | 95 |
presumptive ectoderm | 7.77e-20 | 95 |
regional part of nervous system | 1.55e-17 | 54 |
structure with developmental contribution from neural crest | 1.70e-17 | 92 |
pre-chordal neural plate | 2.00e-16 | 49 |
neural tube | 2.81e-16 | 52 |
neural rod | 2.81e-16 | 52 |
future spinal cord | 2.81e-16 | 52 |
neural keel | 2.81e-16 | 52 |
ecto-epithelium | 7.44e-16 | 73 |
anterior neural tube | 1.23e-13 | 40 |
brain | 2.72e-13 | 47 |
future brain | 2.72e-13 | 47 |
regional part of forebrain | 4.28e-13 | 39 |
forebrain | 4.28e-13 | 39 |
future forebrain | 4.28e-13 | 39 |
regional part of brain | 5.43e-13 | 46 |
gray matter | 2.40e-10 | 34 |
brain grey matter | 1.51e-07 | 29 |
regional part of telencephalon | 1.51e-07 | 29 |
telencephalon | 1.51e-07 | 29 |
diencephalon | 2.00e-07 | 10 |
future diencephalon | 2.00e-07 | 10 |