FFCP PHASE1:Mm9::chr17:35258131..35258142,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13001 | |EntrezGene=13001 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=G3UZX4 | |UniProt=G3UZX4 | ||
|association_with_transcript=-13bp_to_ENSMUST00000174024_5end | |association_with_transcript=-13bp_to_ENSMUST00000174024_5end | ||
|cluster_id=chr17:35258131..35258142,- | |||
|description=CAGE_peak_3_at_Csnk2b_5end | |description=CAGE_peak_3_at_Csnk2b_5end | ||
|id=chr17:35258131..35258142,- | |id=chr17:35258131..35258142,- | ||
|ontology_enrichment_celltype=CL:0000540!5.18e-10!33;CL:0000047!5.18e-10!33;CL:0000031!5.18e-10!33;CL:0000404!5.18e-10!33;CL:0000221!1.01e-08!44;CL:0000133!1.01e-08!44;CL:0002319!1.53e-08!43;CL:0000393!2.59e-08!39;CL:0000211!2.59e-08!39;CL:0000055!6.84e-07!50 | |ontology_enrichment_celltype=CL:0000540!5.18e-10!33;CL:0000047!5.18e-10!33;CL:0000031!5.18e-10!33;CL:0000404!5.18e-10!33;CL:0000221!1.01e-08!44;CL:0000133!1.01e-08!44;CL:0002319!1.53e-08!43;CL:0000393!2.59e-08!39;CL:0000211!2.59e-08!39;CL:0000055!6.84e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.11e-10,33;CL:0000047,5.11e-10,33;CL:0000031,5.11e-10,33;CL:0000404,5.11e-10,33;CL:0000221,9.99e-09,44;CL:0000133,9.99e-09,44;CL:0002319,1.52e-08,43;CL:0000393,2.56e-08,39;CL:0000211,2.56e-08,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.09e-16!75;UBERON:0001016!2.09e-16!75;UBERON:0001017!2.52e-16!73;UBERON:0005743!2.52e-16!73;UBERON:0004121!3.87e-15!102;UBERON:0000924!3.87e-15!102;UBERON:0006601!3.87e-15!102;UBERON:0002346!1.32e-11!71;UBERON:0003075!1.32e-11!71;UBERON:0007284!1.32e-11!71;UBERON:0001049!1.60e-11!52;UBERON:0005068!1.60e-11!52;UBERON:0006241!1.60e-11!52;UBERON:0007135!1.60e-11!52;UBERON:0003080!2.52e-09!40;UBERON:0002780!3.55e-09!39;UBERON:0001890!3.55e-09!39;UBERON:0006240!3.55e-09!39;UBERON:0003056!4.55e-09!49;UBERON:0002020!4.76e-09!34;UBERON:0002616!9.69e-09!49;UBERON:0000033!1.09e-08!63;UBERON:0000955!1.45e-08!50;UBERON:0006238!1.45e-08!50;UBERON:0000153!7.17e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.04e-16,75;UBERON:0001017,2.46e-16,73;UBERON:0004121,5.55e-16,95;UBERON:0000924,5.55e-16,95;UBERON:0006601,5.55e-16,95;UBERON:0010371,9.69e-13,73;UBERON:0002346,1.04e-12,64;UBERON:0003075,1.04e-12,64;UBERON:0007284,1.04e-12,64;UBERON:0001049,1.58e-11,52;UBERON:0005068,1.58e-11,52;UBERON:0006241,1.58e-11,52;UBERON:0007135,1.58e-11,52;UBERON:0000073,2.88e-11,54;UBERON:0003080,2.49e-09,40;UBERON:0002780,3.50e-09,39;UBERON:0001890,3.50e-09,39;UBERON:0006240,3.50e-09,39;UBERON:0003056,4.46e-09,49;UBERON:0002020,4.70e-09,34;UBERON:0010314,1.14e-08,92;UBERON:0002616,1.44e-08,46;UBERON:0000955,2.19e-08,47;UBERON:0006238,2.19e-08,47 | |||
|phase1_expression=8.64803774365887,1.74487703819681,0.909998478779072,0.30246421130683,0.500895729946347,1.00727563147134,1.40167584357315,1.16210991097419,15.0643932702283,16.6185813688615,2.73948749160808,1.99430397488341,0.342401459862411,0.174840804837995,1.66554880907831,1.41732687172878,0,0.630924330716475,0.274228867211478,1.27316895539409,3.91199134694921,5.65958421845046,7.83599367416806,2.23989391910769,2.75291137280604,2.29692785646008,2.58457197695445,2.80112602491656,0.760093677825496,1.51218077855958,3.32595765982957,5.71527606113668,7.38077745101484,0,1.1554064790051,0.997407872150954,1.02084678131185,4.18531630736908,3.906676722619,3.66466620781659,2.94115744015507,4.09827290975067,3.88408282424923,3.27331726736501,2.93993100536592,4.03802854755699,2.34717403304412,2.61630187656536,5.27246838562732,4.27745777963423,2.79972843250725,2.87505128729943,2.01339127269284,1.45072428402269,2.01656279485478,4.63066984864705,1.43266719969378,2.57836046138721,8.9019242778223,8.46385566835253,8.87363964908651,3.72728985276045,3.55717918444456,1.3498495759221,0,0.7104801149461,1.79760066311043,10.373894243682,4.35496371695606,3.91517221161903,3.15487442027073,11.9973413449598,11.9269012113871,4.04219637409348,3.73797336971122,2.75765635983006,4.40463523997555,5.10749352340751,3.84016333140609,6.3305418110493,9.78917786545783,6.77187381723788,5.58365998002762,9.56696437053856,4.88954392885792,16.2045722010517,11.6744778255264,7.08317894136142,4.69502398665741,3.77857800533928,1.15945795480671,1.72084775396277,2.719885334831,0.539703191637817,2.59910566979068,1.79210754838934,2.66844398250329,2.38602451609281,2.59786004602869,1.06001872353102,5.21120653173718,0,0,0,3.030874574157,2.02687892380079,2.52762222507392,2.2836775943812,1.55362730188303,2.22663208597237,5.55153045651635,6.69824052286711,3.68984795609694,2.26083960828934,3.52766121407114,1.63366568728578,8.65182387070309,0.433798070759735,1.76922110389975,2.58826959915855,0.662524555381181,1.45462575940567,5.59175283654366,2.63502717310392,2.93225389538837,0,3.71426885968353,2.39961092397363,4.57452817463033,4.94309110035915,4.57500602818627,4.77486538028885,5.38855392596057,5.8814555185976,5.61027720310812,7.30085683804909,5.09196819251581,4.72746488318353,20.4705434331277,0.420883711772948,8.71806967850115,6.89706313300419,4.68161537493908,4.06903008156431,3.33378845841506,6.27757229395764,4.8724896771059,1.55222022443409,11.4251036254406,10.5899404893979,6.33424046990216,3.94552318369635,4.44875598760957,7.66154766348766,6.37924622864625,5.37392520409932,3.51106593656617,3.3455227924913,4.54661599032948,5.59239585845855,4.69052119962192,5.22179978236943,3.78791576936336,3.73852040320067,2.1597395804233,1.86027155800326,3.21928081679543,2.91913355917924,2.46839774870221,2.29834449710733,1.62137619091711,1.75439984910399,1.97595103761946,1.07365135008297,4.41608891984667,5.65975368086064,1.98251269790279,2.64450566663544,6.39864751605702,6.0381534683714,3.73715637834071,3.02525286935014,3.33567065767305,2.85338439168839,0.949058123089023,3.95277491337626,3.51869292320377,6.36660710531683,1.36474860983384,2.69645822596266,0.648414149624083,0.597423819763102,13.845756769575,6.05517116831563,9.01661885384643,7.127796474586,7.95205197387266,6.17195215034803,4.42655759869801,5.01874503130647,3.1399745568275,4.93588655687202,2.37162101669719,3.83743743147016,3.93117990226406,2.02375901146368,1.42002084971952,2.65294875727659,2.80088436959562,1.43848068725405,1.29708181420028,1.92192989231657,1.43768206527355,2.23284568601102,1.5601883655728,2.52578877947112,1.79397413521912,5.30687873499704,1.29327233116623,5.68474235311454,6.19266910479698,2.03694102930226,4.69380496577004,3.1826188913945,2.14239276797412,2.53673742215138,3.15270288212382,2.6575762757853,1.2756381492599,1.96635977658886,1.89953480052485,0.723245292907558,0,0,0.983528546038072,1.93155722413313,8.18808008937739,5.74337264301796,4.26230857979356,2.27223834483936,9.14973836307144,7.41833614163613,8.18608911384636,4.30143836314594,7.5751549188014,4.24614796183249,8.09621403349789,9.05993159525067,8.69633111482352,3.21321316421807,4.40014264145633,4.45164009168138,6.8412522928502,2.47455184458803,0,6.06951590387454,4.23252979750651,2.26326095707078,2.65771703592696,0.922305443831782,2.58428293168221,2.18120237686503,2.13898427030833,0.948110273807448,1.05418608574999,0,2.04263763452273,6.84232157318979,8.5376731296618,7.93047029616891,10.2857335512519,6.0645397984704,6.08831376227848,7.61162372786498,5.86679270159276,5.08396970073168,2.20528398054962,4.61681508236144,7.42736362801165,4.34253059482722,3.9392873521035,4.43180429311665,2.33184669303881,7.78786268444141,1.36696704638282,4.33412422722767,2.77791791054568,1.31857919903284,1.77702496037333,1.14389086603261,3.22959016988325,3.07893195112048,4.83699908315483,6.68269432610579,7.27572785236611,3.25311147402958,3.88819226958485,4.59994251231831,6.98760203987768,4.18079473792944,2.81021749466142,3.14107130380836,0.90730481304255,1.24267862617385,9.01908701894705,8.07389348637486,7.94200754194069,7.19469396872976,5.03723311563151,5.91346439217724,7.98029222791127,7.03103678157331,13.2122773976396,9.66336483304024,6.62469014393091,1.89606672376907,4.66267995167378,6.47079030138412,5.84643703400078,4.65469408735452,4.37098980518783,2.76449533895928,4.57837534241189,3.33189284828887,2.66723823292499,2.92395936896837,2.33898913775406,2.79014340756955,1.5193997283604,4.53460767230423,2.66383144048878,9.86852422704233,7.05115388729129,0.965947970160952,1.68914227906064,2.38097111547445,1.71494703263253,0,9.60078132449013,11.0478056761722,12.0308057822273,7.73339320546594,4.11049511862385,8.3093328712867,7.42524750254986,6.75481804836331,8.15656336171568,3.62432218226274,7.88783841639743,4.38927360741134,5.12200817262403,3.40349403895612,4.61148957781561,3.67687016900028,4.00044110042907,3.29656091582231,4.81378814387723,3.03236654116557,3.54871019846336,3.39527414494937,2.71560371662659,2.68905640100451,3.0440798546475,5.71552429539688,2.0859178670074,2.89363830695558,3.70877310722976,3.38557516309114,5.14303878578123,3.54951612318675,1.43061713968393,2.32554266611726,2.72917203204459,3.38458431566706,4.57319932181931,2.63069711437843,3.12349461845482,2.80571135828869,3.44041552560105,2.56111654176465,3.6830793885272,1.54936841185966,3.66522560864169,5.9954538705107,3.04111090979031,3.86767897286937,3.44318997723918,4.19123696327079,2.55054619182464 | |phase1_expression=8.64803774365887,1.74487703819681,0.909998478779072,0.30246421130683,0.500895729946347,1.00727563147134,1.40167584357315,1.16210991097419,15.0643932702283,16.6185813688615,2.73948749160808,1.99430397488341,0.342401459862411,0.174840804837995,1.66554880907831,1.41732687172878,0,0.630924330716475,0.274228867211478,1.27316895539409,3.91199134694921,5.65958421845046,7.83599367416806,2.23989391910769,2.75291137280604,2.29692785646008,2.58457197695445,2.80112602491656,0.760093677825496,1.51218077855958,3.32595765982957,5.71527606113668,7.38077745101484,0,1.1554064790051,0.997407872150954,1.02084678131185,4.18531630736908,3.906676722619,3.66466620781659,2.94115744015507,4.09827290975067,3.88408282424923,3.27331726736501,2.93993100536592,4.03802854755699,2.34717403304412,2.61630187656536,5.27246838562732,4.27745777963423,2.79972843250725,2.87505128729943,2.01339127269284,1.45072428402269,2.01656279485478,4.63066984864705,1.43266719969378,2.57836046138721,8.9019242778223,8.46385566835253,8.87363964908651,3.72728985276045,3.55717918444456,1.3498495759221,0,0.7104801149461,1.79760066311043,10.373894243682,4.35496371695606,3.91517221161903,3.15487442027073,11.9973413449598,11.9269012113871,4.04219637409348,3.73797336971122,2.75765635983006,4.40463523997555,5.10749352340751,3.84016333140609,6.3305418110493,9.78917786545783,6.77187381723788,5.58365998002762,9.56696437053856,4.88954392885792,16.2045722010517,11.6744778255264,7.08317894136142,4.69502398665741,3.77857800533928,1.15945795480671,1.72084775396277,2.719885334831,0.539703191637817,2.59910566979068,1.79210754838934,2.66844398250329,2.38602451609281,2.59786004602869,1.06001872353102,5.21120653173718,0,0,0,3.030874574157,2.02687892380079,2.52762222507392,2.2836775943812,1.55362730188303,2.22663208597237,5.55153045651635,6.69824052286711,3.68984795609694,2.26083960828934,3.52766121407114,1.63366568728578,8.65182387070309,0.433798070759735,1.76922110389975,2.58826959915855,0.662524555381181,1.45462575940567,5.59175283654366,2.63502717310392,2.93225389538837,0,3.71426885968353,2.39961092397363,4.57452817463033,4.94309110035915,4.57500602818627,4.77486538028885,5.38855392596057,5.8814555185976,5.61027720310812,7.30085683804909,5.09196819251581,4.72746488318353,20.4705434331277,0.420883711772948,8.71806967850115,6.89706313300419,4.68161537493908,4.06903008156431,3.33378845841506,6.27757229395764,4.8724896771059,1.55222022443409,11.4251036254406,10.5899404893979,6.33424046990216,3.94552318369635,4.44875598760957,7.66154766348766,6.37924622864625,5.37392520409932,3.51106593656617,3.3455227924913,4.54661599032948,5.59239585845855,4.69052119962192,5.22179978236943,3.78791576936336,3.73852040320067,2.1597395804233,1.86027155800326,3.21928081679543,2.91913355917924,2.46839774870221,2.29834449710733,1.62137619091711,1.75439984910399,1.97595103761946,1.07365135008297,4.41608891984667,5.65975368086064,1.98251269790279,2.64450566663544,6.39864751605702,6.0381534683714,3.73715637834071,3.02525286935014,3.33567065767305,2.85338439168839,0.949058123089023,3.95277491337626,3.51869292320377,6.36660710531683,1.36474860983384,2.69645822596266,0.648414149624083,0.597423819763102,13.845756769575,6.05517116831563,9.01661885384643,7.127796474586,7.95205197387266,6.17195215034803,4.42655759869801,5.01874503130647,3.1399745568275,4.93588655687202,2.37162101669719,3.83743743147016,3.93117990226406,2.02375901146368,1.42002084971952,2.65294875727659,2.80088436959562,1.43848068725405,1.29708181420028,1.92192989231657,1.43768206527355,2.23284568601102,1.5601883655728,2.52578877947112,1.79397413521912,5.30687873499704,1.29327233116623,5.68474235311454,6.19266910479698,2.03694102930226,4.69380496577004,3.1826188913945,2.14239276797412,2.53673742215138,3.15270288212382,2.6575762757853,1.2756381492599,1.96635977658886,1.89953480052485,0.723245292907558,0,0,0.983528546038072,1.93155722413313,8.18808008937739,5.74337264301796,4.26230857979356,2.27223834483936,9.14973836307144,7.41833614163613,8.18608911384636,4.30143836314594,7.5751549188014,4.24614796183249,8.09621403349789,9.05993159525067,8.69633111482352,3.21321316421807,4.40014264145633,4.45164009168138,6.8412522928502,2.47455184458803,0,6.06951590387454,4.23252979750651,2.26326095707078,2.65771703592696,0.922305443831782,2.58428293168221,2.18120237686503,2.13898427030833,0.948110273807448,1.05418608574999,0,2.04263763452273,6.84232157318979,8.5376731296618,7.93047029616891,10.2857335512519,6.0645397984704,6.08831376227848,7.61162372786498,5.86679270159276,5.08396970073168,2.20528398054962,4.61681508236144,7.42736362801165,4.34253059482722,3.9392873521035,4.43180429311665,2.33184669303881,7.78786268444141,1.36696704638282,4.33412422722767,2.77791791054568,1.31857919903284,1.77702496037333,1.14389086603261,3.22959016988325,3.07893195112048,4.83699908315483,6.68269432610579,7.27572785236611,3.25311147402958,3.88819226958485,4.59994251231831,6.98760203987768,4.18079473792944,2.81021749466142,3.14107130380836,0.90730481304255,1.24267862617385,9.01908701894705,8.07389348637486,7.94200754194069,7.19469396872976,5.03723311563151,5.91346439217724,7.98029222791127,7.03103678157331,13.2122773976396,9.66336483304024,6.62469014393091,1.89606672376907,4.66267995167378,6.47079030138412,5.84643703400078,4.65469408735452,4.37098980518783,2.76449533895928,4.57837534241189,3.33189284828887,2.66723823292499,2.92395936896837,2.33898913775406,2.79014340756955,1.5193997283604,4.53460767230423,2.66383144048878,9.86852422704233,7.05115388729129,0.965947970160952,1.68914227906064,2.38097111547445,1.71494703263253,0,9.60078132449013,11.0478056761722,12.0308057822273,7.73339320546594,4.11049511862385,8.3093328712867,7.42524750254986,6.75481804836331,8.15656336171568,3.62432218226274,7.88783841639743,4.38927360741134,5.12200817262403,3.40349403895612,4.61148957781561,3.67687016900028,4.00044110042907,3.29656091582231,4.81378814387723,3.03236654116557,3.54871019846336,3.39527414494937,2.71560371662659,2.68905640100451,3.0440798546475,5.71552429539688,2.0859178670074,2.89363830695558,3.70877310722976,3.38557516309114,5.14303878578123,3.54951612318675,1.43061713968393,2.32554266611726,2.72917203204459,3.38458431566706,4.57319932181931,2.63069711437843,3.12349461845482,2.80571135828869,3.44041552560105,2.56111654176465,3.6830793885272,1.54936841185966,3.66522560864169,5.9954538705107,3.04111090979031,3.86767897286937,3.44318997723918,4.19123696327079,2.55054619182464 | ||
|short_description=p3@Csnk2b | |short_description=p3@Csnk2b | ||
}} | }} |
Latest revision as of 09:30, 26 September 2015
Short description: | p3@Csnk2b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Csnk2b_5end |
Coexpression cluster: | NA |
Association with transcript: | -13bp_to_ENSMUST00000174024_5end |
EntrezGene: | Csnk2b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.11e-10 | 33 |
neuronal stem cell | 5.11e-10 | 33 |
neuroblast | 5.11e-10 | 33 |
electrically signaling cell | 5.11e-10 | 33 |
ectodermal cell | 9.99e-09 | 44 |
neurectodermal cell | 9.99e-09 | 44 |
neural cell | 1.52e-08 | 43 |
electrically responsive cell | 2.56e-08 | 39 |
electrically active cell | 2.56e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.04e-16 | 75 |
central nervous system | 2.46e-16 | 73 |
ectoderm-derived structure | 5.55e-16 | 95 |
ectoderm | 5.55e-16 | 95 |
presumptive ectoderm | 5.55e-16 | 95 |
ecto-epithelium | 9.69e-13 | 73 |
neurectoderm | 1.04e-12 | 64 |
neural plate | 1.04e-12 | 64 |
presumptive neural plate | 1.04e-12 | 64 |
neural tube | 1.58e-11 | 52 |
neural rod | 1.58e-11 | 52 |
future spinal cord | 1.58e-11 | 52 |
neural keel | 1.58e-11 | 52 |
regional part of nervous system | 2.88e-11 | 54 |
anterior neural tube | 2.49e-09 | 40 |
regional part of forebrain | 3.50e-09 | 39 |
forebrain | 3.50e-09 | 39 |
future forebrain | 3.50e-09 | 39 |
pre-chordal neural plate | 4.46e-09 | 49 |
gray matter | 4.70e-09 | 34 |
structure with developmental contribution from neural crest | 1.14e-08 | 92 |
regional part of brain | 1.44e-08 | 46 |
brain | 2.19e-08 | 47 |
future brain | 2.19e-08 | 47 |