FFCP PHASE1:Mm9::chr9:14589082..14589102,+: Difference between revisions
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{{FFCP|EntrezGene=17535|HGNC=|UniProt=Q61216|association_with_transcript=0bp_to_ENSMUST00000034405_5end|description=CAGE_peak_4_at_Mre11a_5end|id=chr9:14589082..14589102,+|ontology_enrichment_celltype=CL:0000542!1.40e-07!13;CL:0000051!1.40e-07!13;CL:0000838!2.12e-07!12;CL:0000084!8.99e-07!11;CL:0000827!8.99e-07!11|ontology_enrichment_celltype_v019_2=CL:0000542,7.11e-09,13;CL:0000051,7.11e-09,13;CL:0000791,1.15e-08,9;CL:0000789,1.15e-08,9;CL:0002420,1.15e-08,9;CL:0002419,1.15e-08,9;CL:0000790,1.15e-08,9;CL:0000838,1.33e-08,12;CL:0000624,6.75e-08,8;CL:0000084,9.27e-08,11;CL:0000827,9.27e-08,11;CL:0000988,1.64e-07,32;CL:0002032,1.64e-07,32;CL:0000037,1.64e-07,32;CL:0000837,1.64e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!6.69e-08!29;UBERON:0002370!4.32e-07!23;UBERON:0000974!4.32e-07!23;UBERON:0004807!4.32e-07!23;UBERON:0005058!4.32e-07!23;UBERON:0003351!4.32e-07!23;UBERON:0009113!4.32e-07!23;UBERON:0003295!4.32e-07!23;UBERON:0009722!4.32e-07!23;UBERON:0005562!4.32e-07!23;UBERON:0007690!4.32e-07!23|ontology_enrichment_uberon_v019_2=UBERON:0004177,4.79e-12,29;UBERON:0005057,4.79e-12,29;UBERON:0000077,3.03e-11,35;UBERON:0002370,3.46e-11,23;UBERON:0000974,3.46e-11,23;UBERON:0004807,3.46e-11,23;UBERON:0005058,3.46e-11,23;UBERON:0003351,3.46e-11,23;UBERON:0009113,3.46e-11,23;UBERON:0003295,3.46e-11,23;UBERON:0009722,3.46e-11,23;UBERON:0005562,3.46e-11,23;UBERON:0007690,3.46e-11,23;UBERON:0006562,2.12e-10,24;UBERON:0003408,2.12e-10,24;UBERON:0001557,2.12e-10,24;UBERON:0001042,2.12e-10,24;UBERON:0008814,2.12e-10,24;UBERON:0009145,2.12e-10,24;UBERON:0002390,2.15e-10,45;UBERON:0003061,2.15e-10,45;UBERON:0002193,3.68e-10,48;UBERON:0002405,3.68e-10,48;UBERON:0000072,2.02e-08,27;UBERON:0007811,2.87e-08,36;UBERON:0000153,5.47e-07,43|phase1_expression=1.44133962394315,1.04692622291808,0,0,1.00179145989269,0.16787927191189,0.700837921786577,1.93684985162364,1.68946466582,2.57470978954193,4.45166717386313,4.46724090373884,3.59521532855532,3.93391810885488,0.666219523631325,1.82227740650843,0.699561878128147,3.94327706697797,3.15363197293199,3.39511721438424,2.29616883407888,0.992909512008853,1.30599894569468,0.47997726838022,0.45881856213434,0,0.86152399231815,0.215471232685889,0.380046838912748,0.252030129759931,0.665191531965914,0.635030673459631,0.61506478758457,0,2.02196133825892,0.664938581433969,1.02084678131185,2.09265815368454,0.7813353445238,1.57057123192139,1.76469446409304,0.683045484958446,0.971020706062307,0.755380907853464,0.304130793658544,0.734187008646726,0.782391344348039,0.218025156380447,0.219686182734472,0.194429899074283,0.279972843250725,0,3.52343472721246,2.90144856804538,2.35265659399725,0.257259436035947,0.286533439938757,0,0.606949382578793,0,0,0,0,0,0,0,0.299600110518405,0,0.414758449233911,0.135005938331691,0.841299845405528,0.285650984403804,0.220868540951614,0.367472397644862,0.479227355091182,0,1.10115880999389,0.893811366596314,1.22885226604995,0.395658863190582,0.274462930807229,0.52091337055676,0.837548997004143,1.68828783009504,1.22238598221448,0,0.854230084794618,0.372798891650601,1.59025005999687,1.43585964202892,0.289864488701678,0,0,0,1.94932925234301,0.448026887097336,0.842666520790511,1.53387290320252,0.259786004602869,0,1.12674735821344,0,0,0,0.649473123033642,0.506719730950197,0.505524445014783,1.1418387971906,4.40194402200192,1.1875371125186,0.867426633830679,0.608930956624282,0.922461989024234,1.3565037649736,0.23517741427141,1.0053327306374,0.741584903203122,1.15679485535929,0,0.323533699894818,1.32504911076236,0.484875253135222,0,1.46390398505774,0.628340120440365,0,1.67741174308288,1.19980546198682,1.14363204365758,1.49790639404823,0.915001205637253,0.376963056338593,1.04294592115366,0.767146371990992,0.83115217823824,1.1356888414743,0.611036183101898,1.7416975885413,0.758168275301024,1.05220927943237,0.780722657776222,0.459804208866946,0.540186389416048,0.753524089178575,1.29269348387523,0.768682321709099,1.03071897015702,1.03481348295606,1.07783996466421,0.378212160335639,0.703804496655795,0.43839146485515,0.834141747676794,2.78601733217733,0.823128545631774,0.796137067273973,0.702213187313235,1.02939162845886,1.70498099637356,0.414251545071004,0.938104239924385,1.08037236876609,0.946978942340841,0.787056926989615,0.308534225774757,0.930135779001631,0.536546802799238,0.817357396570186,0.493679549740441,0.985004784474571,0.729619285912702,0.877199924551994,0.219550115291051,0.805238512562231,0.630869845692382,0.514523061896422,0.660837565967596,1.58670339998127,1.2797295032114,0.928946687441754,1.28867461322093,0.605050573870028,0.889512175379481,0.190225626112559,0.949058123089023,0.823494773620054,1.25667604400135,0.596869416123452,0.58489226135736,1.79763881730844,0.864552199498777,0.398282546508734,0.569003702859245,0.228497025219458,1.1270773567308,0.610953983535943,1.16371492300575,1.1221731182451,0.316182685621286,0.590440591918409,0.784993639206874,0.616985819609003,1.1858105083486,1.83529616287703,0.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=17535 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q61216 | |||
|association_with_transcript=0bp_to_ENSMUST00000034405_5end | |||
|cluster_id=chr9:14589082..14589102,+ | |||
|description=CAGE_peak_4_at_Mre11a_5end | |||
|id=chr9:14589082..14589102,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.40e-07!13;CL:0000051!1.40e-07!13;CL:0000838!2.12e-07!12;CL:0000084!8.99e-07!11;CL:0000827!8.99e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,7.11e-09,13;CL:0000051,7.11e-09,13;CL:0000791,1.15e-08,9;CL:0000789,1.15e-08,9;CL:0002420,1.15e-08,9;CL:0002419,1.15e-08,9;CL:0000790,1.15e-08,9;CL:0000838,1.33e-08,12;CL:0000624,6.75e-08,8;CL:0000084,9.27e-08,11;CL:0000827,9.27e-08,11;CL:0000988,1.64e-07,32;CL:0002032,1.64e-07,32;CL:0000037,1.64e-07,32;CL:0000837,1.64e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!6.69e-08!29;UBERON:0002370!4.32e-07!23;UBERON:0000974!4.32e-07!23;UBERON:0004807!4.32e-07!23;UBERON:0005058!4.32e-07!23;UBERON:0003351!4.32e-07!23;UBERON:0009113!4.32e-07!23;UBERON:0003295!4.32e-07!23;UBERON:0009722!4.32e-07!23;UBERON:0005562!4.32e-07!23;UBERON:0007690!4.32e-07!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,4.79e-12,29;UBERON:0005057,4.79e-12,29;UBERON:0000077,3.03e-11,35;UBERON:0002370,3.46e-11,23;UBERON:0000974,3.46e-11,23;UBERON:0004807,3.46e-11,23;UBERON:0005058,3.46e-11,23;UBERON:0003351,3.46e-11,23;UBERON:0009113,3.46e-11,23;UBERON:0003295,3.46e-11,23;UBERON:0009722,3.46e-11,23;UBERON:0005562,3.46e-11,23;UBERON:0007690,3.46e-11,23;UBERON:0006562,2.12e-10,24;UBERON:0003408,2.12e-10,24;UBERON:0001557,2.12e-10,24;UBERON:0001042,2.12e-10,24;UBERON:0008814,2.12e-10,24;UBERON:0009145,2.12e-10,24;UBERON:0002390,2.15e-10,45;UBERON:0003061,2.15e-10,45;UBERON:0002193,3.68e-10,48;UBERON:0002405,3.68e-10,48;UBERON:0000072,2.02e-08,27;UBERON:0007811,2.87e-08,36;UBERON:0000153,5.47e-07,43 | |||
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| |||
|short_description=p4@Mre11a | |||
}} |
Latest revision as of 10:07, 26 September 2015
Short description: | p4@Mre11a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Mre11a_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000034405_5end |
EntrezGene: | Mre11a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 7.11e-09 | 13 |
common lymphoid progenitor | 7.11e-09 | 13 |
mature alpha-beta T cell | 1.15e-08 | 9 |
alpha-beta T cell | 1.15e-08 | 9 |
immature T cell | 1.15e-08 | 9 |
mature T cell | 1.15e-08 | 9 |
immature alpha-beta T cell | 1.15e-08 | 9 |
lymphoid lineage restricted progenitor cell | 1.33e-08 | 12 |
CD4-positive, alpha-beta T cell | 6.75e-08 | 8 |
T cell | 9.27e-08 | 11 |
pro-T cell | 9.27e-08 | 11 |
hematopoietic cell | 1.64e-07 | 32 |
hematopoietic oligopotent progenitor cell | 1.64e-07 | 32 |
hematopoietic stem cell | 1.64e-07 | 32 |
hematopoietic multipotent progenitor cell | 1.64e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 4.79e-12 | 29 |
immune organ | 4.79e-12 | 29 |
mixed endoderm/mesoderm-derived structure | 3.03e-11 | 35 |
thymus | 3.46e-11 | 23 |
neck | 3.46e-11 | 23 |
respiratory system epithelium | 3.46e-11 | 23 |
hemolymphoid system gland | 3.46e-11 | 23 |
pharyngeal epithelium | 3.46e-11 | 23 |
thymic region | 3.46e-11 | 23 |
pharyngeal gland | 3.46e-11 | 23 |
entire pharyngeal arch endoderm | 3.46e-11 | 23 |
thymus primordium | 3.46e-11 | 23 |
early pharyngeal endoderm | 3.46e-11 | 23 |
pharynx | 2.12e-10 | 24 |
gland of gut | 2.12e-10 | 24 |
upper respiratory tract | 2.12e-10 | 24 |
chordate pharynx | 2.12e-10 | 24 |
pharyngeal arch system | 2.12e-10 | 24 |
pharyngeal region of foregut | 2.12e-10 | 24 |
hematopoietic system | 2.15e-10 | 45 |
blood island | 2.15e-10 | 45 |
hemolymphoid system | 3.68e-10 | 48 |
immune system | 3.68e-10 | 48 |
segment of respiratory tract | 2.02e-08 | 27 |
craniocervical region | 2.87e-08 | 36 |
anterior region of body | 5.47e-07 | 43 |