FFCP PHASE1:Mm9::chr7:28043859..28043878,+: Difference between revisions
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{{FFCP|EntrezGene=18223|HGNC=|MCL_coexpression_id=398|UniProt=|association_with_transcript=34bp_to_ENSMUST00000149805_5end|description=CAGE_peak_2_at_Numbl_5end|id=chr7:28043859..28043878,+|ontology_enrichment_celltype=CL:0000055!1.99e-11!50;CL:0000221!2.11e-11!44;CL:0000133!2.11e-11!44;CL:0002319!6.53e-11!43;CL:0000393!5.15e-10!39;CL:0000211!5.15e-10!39;CL:0000540!9.98e-09!33;CL:0000047!9.98e-09!33;CL:0000031!9.98e-09!33;CL:0000404!9.98e-09!33;CL:0000117!1.20e-08!23;CL:0000337!1.20e-08!23|ontology_enrichment_celltype_v019_2=CL:0000221,1.43e-11,44;CL:0000133,1.43e-11,44;CL:0002319,4.51e-11,43;CL:0000393,3.69e-10,39;CL:0000211,3.69e-10,39;CL:0000540,7.52e-09,33;CL:0000047,7.52e-09,33;CL:0000031,7.52e-09,33;CL:0000404,7.52e-09,33;CL:0000117,9.06e-09,23;CL:0000337,9.06e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.45e-22!102;UBERON:0000924!2.45e-22!102;UBERON:0006601!2.45e-22!102;UBERON:0000073!2.13e-20!75;UBERON:0001016!2.13e-20!75;UBERON:0001017!3.51e-20!73;UBERON:0005743!3.51e-20!73;UBERON:0002346!1.06e-17!71;UBERON:0003075!1.06e-17!71;UBERON:0007284!1.06e-17!71;UBERON:0001049!6.28e-17!52;UBERON:0005068!6.28e-17!52;UBERON:0006241!6.28e-17!52;UBERON:0007135!6.28e-17!52;UBERON:0000033!3.20e-16!63;UBERON:0003056!3.97e-14!49;UBERON:0002616!9.22e-14!49;UBERON:0000955!9.78e-14!50;UBERON:0006238!9.78e-14!50;UBERON:0002020!6.11e-13!34;UBERON:0003080!2.82e-12!40;UBERON:0002780!7.79e-12!39;UBERON:0001890!7.79e-12!39;UBERON:0006240!7.79e-12!39;UBERON:0002791!4.62e-10!29;UBERON:0003528!4.62e-10!29;UBERON:0001893!4.62e-10!29;UBERON:0000153!1.57e-09!94;UBERON:0007811!6.76e-08!86;UBERON:0000468!8.66e-08!333;UBERON:0000956!3.41e-07!21;UBERON:0001869!3.41e-07!21;UBERON:0000203!3.41e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0004121,9.17e-24,95;UBERON:0000924,9.17e-24,95;UBERON:0006601,9.17e-24,95;UBERON:0010371,7.48e-21,73;UBERON:0001016,1.01e-20,75;UBERON:0001017,1.68e-20,73;UBERON:0002346,1.99e-19,64;UBERON:0003075,1.99e-19,64;UBERON:0007284,1.99e-19,64;UBERON:0001049,3.42e-17,52;UBERON:0005068,3.42e-17,52;UBERON:0006241,3.42e-17,52;UBERON:0007135,3.42e-17,52;UBERON:0000073,5.88e-17,54;UBERON:0010314,1.50e-16,92;UBERON:0003056,2.42e-14,49;UBERON:0002616,7.12e-14,46;UBERON:0000955,7.73e-14,47;UBERON:0006238,7.73e-14,47;UBERON:0002020,3.90e-13,34;UBERON:0003080,1.84e-12,40;UBERON:0002780,5.19e-12,39;UBERON:0001890,5.19e-12,39;UBERON:0006240,5.19e-12,39;UBERON:0003528,3.30e-10,29;UBERON:0002791,3.30e-10,29;UBERON:0001893,3.30e-10,29;UBERON:0000956,2.72e-07,21;UBERON:0001869,2.72e-07,21;UBERON:0000203,2.72e-07,21|phase1_expression=13.2923543096979,0,0,0,0,0,0.233612640595526,0.129123323441576,0,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0.137114433605739,0,3.40173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,6.16894408080329,6.79225439170748,2.56965453026354,18.7773922643529,8.06693078607652,10.3252505885202,10.6936444490856,5.5994568650145,11.5002051491977,0,0,0,24.6969058594509,26.0745430344269,11.3447860301037,21.0409119293982,23.2756030879694,14.5781222806421,6.09920157724438,8.00365316500025,1.3498495759221,2.96659908770092,3.5524005747305,6.89080254192331,9.60545763303886,9.53944433237994,11.2054928815303,10.9368979902719,21.9951257990929,15.6816664075646,7.96190194897201,5.94241920313065,4.5960939330501,7.70811166995721,4.97980618532232,7.52672012955593,17.2771036926554,14.8209982635904,14.5855743755893,4.74611098302348,10.6924895906019,10.5430790965999,19.4454866412621,14.3795397607094,15.0983551118493,6.73963120665338,7.78387069099891,0.869593466105033,0,0,0,0,0,2.38755514223978,9.20323741921512,6.49465011507172,8.83348936275851,13.9434985578914,8.98285341900225,17.8363667794652,7.11066703153331,0.432982082022428,0.506719730950197,0,0.34255163915718,1.29468941823586,1.03909497345377,5.89850111004862,8.22056791442781,2.99800146432876,3.91878865436819,5.29149182110672,1.50799909595611,5.6854842578906,5.63937491987655,0,9.70601099684455,1.32504911076236,4.363877278217,3.72783522436244,6.44117753425404,17.5935233723302,0,0.11981512450592,0,0.254140454146129,11.9832511523858,12.3525162761029,10.178002521142,9.21268897019065,10.4843337505436,8.51930982694196,7.62533936418461,11.6096874789361,3.73220911830279,2.0217820674694,1.47309299120532,5.20481771850815,11.2652031172402,12.2442248267637,9.19299388797862,13.0630078370549,9.22418786050918,10.9631017734883,8.79591460512653,2.58681591519411,8.32066752738405,9.67731182901719,13.3709396780821,14.4584569597311,19.1538691587192,16.6683530490434,2.7864797354589,0,0.257347907114715,0,1.86413195281952,1.64168241986767,0.900310307305074,1.65721314909647,1.96764231747404,3.23960937063494,1.62773761325285,2.41446061259657,3.26942958628075,4.27855609775049,5.08919138645195,4.62092214411378,3.36259971078264,3.07370161407471,2.54992195644706,8.41159794256509,9.98174740079059,0,0.528901133327089,2.77274725695804,2.78684006232526,3.22168653305233,2.01683524623343,1.33426826306922,4.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18223 | |||
|HGNC= | |||
|MCL_coexpression_id=398 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=34bp_to_ENSMUST00000149805_5end | |||
|cluster_id=chr7:28043859..28043878,+ | |||
|description=CAGE_peak_2_at_Numbl_5end | |||
|id=chr7:28043859..28043878,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.99e-11!50;CL:0000221!2.11e-11!44;CL:0000133!2.11e-11!44;CL:0002319!6.53e-11!43;CL:0000393!5.15e-10!39;CL:0000211!5.15e-10!39;CL:0000540!9.98e-09!33;CL:0000047!9.98e-09!33;CL:0000031!9.98e-09!33;CL:0000404!9.98e-09!33;CL:0000117!1.20e-08!23;CL:0000337!1.20e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.43e-11,44;CL:0000133,1.43e-11,44;CL:0002319,4.51e-11,43;CL:0000393,3.69e-10,39;CL:0000211,3.69e-10,39;CL:0000540,7.52e-09,33;CL:0000047,7.52e-09,33;CL:0000031,7.52e-09,33;CL:0000404,7.52e-09,33;CL:0000117,9.06e-09,23;CL:0000337,9.06e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.45e-22!102;UBERON:0000924!2.45e-22!102;UBERON:0006601!2.45e-22!102;UBERON:0000073!2.13e-20!75;UBERON:0001016!2.13e-20!75;UBERON:0001017!3.51e-20!73;UBERON:0005743!3.51e-20!73;UBERON:0002346!1.06e-17!71;UBERON:0003075!1.06e-17!71;UBERON:0007284!1.06e-17!71;UBERON:0001049!6.28e-17!52;UBERON:0005068!6.28e-17!52;UBERON:0006241!6.28e-17!52;UBERON:0007135!6.28e-17!52;UBERON:0000033!3.20e-16!63;UBERON:0003056!3.97e-14!49;UBERON:0002616!9.22e-14!49;UBERON:0000955!9.78e-14!50;UBERON:0006238!9.78e-14!50;UBERON:0002020!6.11e-13!34;UBERON:0003080!2.82e-12!40;UBERON:0002780!7.79e-12!39;UBERON:0001890!7.79e-12!39;UBERON:0006240!7.79e-12!39;UBERON:0002791!4.62e-10!29;UBERON:0003528!4.62e-10!29;UBERON:0001893!4.62e-10!29;UBERON:0000153!1.57e-09!94;UBERON:0007811!6.76e-08!86;UBERON:0000468!8.66e-08!333;UBERON:0000956!3.41e-07!21;UBERON:0001869!3.41e-07!21;UBERON:0000203!3.41e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,9.17e-24,95;UBERON:0000924,9.17e-24,95;UBERON:0006601,9.17e-24,95;UBERON:0010371,7.48e-21,73;UBERON:0001016,1.01e-20,75;UBERON:0001017,1.68e-20,73;UBERON:0002346,1.99e-19,64;UBERON:0003075,1.99e-19,64;UBERON:0007284,1.99e-19,64;UBERON:0001049,3.42e-17,52;UBERON:0005068,3.42e-17,52;UBERON:0006241,3.42e-17,52;UBERON:0007135,3.42e-17,52;UBERON:0000073,5.88e-17,54;UBERON:0010314,1.50e-16,92;UBERON:0003056,2.42e-14,49;UBERON:0002616,7.12e-14,46;UBERON:0000955,7.73e-14,47;UBERON:0006238,7.73e-14,47;UBERON:0002020,3.90e-13,34;UBERON:0003080,1.84e-12,40;UBERON:0002780,5.19e-12,39;UBERON:0001890,5.19e-12,39;UBERON:0006240,5.19e-12,39;UBERON:0003528,3.30e-10,29;UBERON:0002791,3.30e-10,29;UBERON:0001893,3.30e-10,29;UBERON:0000956,2.72e-07,21;UBERON:0001869,2.72e-07,21;UBERON:0000203,2.72e-07,21 | |||
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| |||
|short_description=p2@Numbl | |||
}} |
Latest revision as of 11:37, 26 September 2015
Short description: | p2@Numbl |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Numbl_5end |
Coexpression cluster: | MCL_coexpression_mm9:398 |
Association with transcript: | 34bp_to_ENSMUST00000149805_5end |
EntrezGene: | Numbl |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.43e-11 | 44 |
neurectodermal cell | 1.43e-11 | 44 |
neural cell | 4.51e-11 | 43 |
electrically responsive cell | 3.69e-10 | 39 |
electrically active cell | 3.69e-10 | 39 |
neuron | 7.52e-09 | 33 |
neuronal stem cell | 7.52e-09 | 33 |
neuroblast | 7.52e-09 | 33 |
electrically signaling cell | 7.52e-09 | 33 |
CNS neuron (sensu Vertebrata) | 9.06e-09 | 23 |
neuroblast (sensu Vertebrata) | 9.06e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 9.17e-24 | 95 |
ectoderm | 9.17e-24 | 95 |
presumptive ectoderm | 9.17e-24 | 95 |
ecto-epithelium | 7.48e-21 | 73 |
nervous system | 1.01e-20 | 75 |
central nervous system | 1.68e-20 | 73 |
neurectoderm | 1.99e-19 | 64 |
neural plate | 1.99e-19 | 64 |
presumptive neural plate | 1.99e-19 | 64 |
neural tube | 3.42e-17 | 52 |
neural rod | 3.42e-17 | 52 |
future spinal cord | 3.42e-17 | 52 |
neural keel | 3.42e-17 | 52 |
regional part of nervous system | 5.88e-17 | 54 |
structure with developmental contribution from neural crest | 1.50e-16 | 92 |
pre-chordal neural plate | 2.42e-14 | 49 |
regional part of brain | 7.12e-14 | 46 |
brain | 7.73e-14 | 47 |
future brain | 7.73e-14 | 47 |
gray matter | 3.90e-13 | 34 |
anterior neural tube | 1.84e-12 | 40 |
regional part of forebrain | 5.19e-12 | 39 |
forebrain | 5.19e-12 | 39 |
future forebrain | 5.19e-12 | 39 |
brain grey matter | 3.30e-10 | 29 |
regional part of telencephalon | 3.30e-10 | 29 |
telencephalon | 3.30e-10 | 29 |
cerebral cortex | 2.72e-07 | 21 |
cerebral hemisphere | 2.72e-07 | 21 |
pallium | 2.72e-07 | 21 |