FFCP PHASE1:Mm9::chr6:124706341..124706381,-: Difference between revisions
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{{FFCP|EntrezGene=13498|HGNC=|UniProt=O35126|association_with_transcript=123bp_to_NM_007881,uc009drr.1_5end|description=CAGE_peak_5_at_Atn1_5end|id=chr6:124706341..124706381,-|ontology_enrichment_celltype=CL:0002319!2.77e-11!43;CL:0000221!7.34e-11!44;CL:0000133!7.34e-11!44;CL:0000055!1.73e-10!50;CL:0000117!4.96e-10!23;CL:0000337!4.96e-10!23;CL:0000540!1.69e-09!33;CL:0000047!1.69e-09!33;CL:0000031!1.69e-09!33;CL:0000404!1.69e-09!33;CL:0000393!1.76e-09!39;CL:0000211!1.76e-09!39|ontology_enrichment_celltype_v019_2=CL:0002319,7.23e-11,43;CL:0000221,3.19e-10,44;CL:0000133,3.19e-10,44;CL:0000117,4.51e-10,23;CL:0000337,4.51e-10,23;CL:0000393,3.79e-09,39;CL:0000211,3.79e-09,39;CL:0000540,4.30e-09,33;CL:0000047,4.30e-09,33;CL:0000031,4.30e-09,33;CL:0000404,4.30e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.72e-24!73;UBERON:0005743!1.72e-24!73;UBERON:0000073!4.16e-23!75;UBERON:0001016!4.16e-23!75;UBERON:0004121!1.02e-19!102;UBERON:0000924!1.02e-19!102;UBERON:0006601!1.02e-19!102;UBERON:0001049!9.66e-19!52;UBERON:0005068!9.66e-19!52;UBERON:0006241!9.66e-19!52;UBERON:0007135!9.66e-19!52;UBERON:0000955!3.01e-18!50;UBERON:0006238!3.01e-18!50;UBERON:0002616!1.41e-17!49;UBERON:0002346!1.86e-16!71;UBERON:0003075!1.86e-16!71;UBERON:0007284!1.86e-16!71;UBERON:0000033!1.93e-16!63;UBERON:0002020!2.32e-14!34;UBERON:0003080!7.61e-14!40;UBERON:0002780!2.98e-13!39;UBERON:0001890!2.98e-13!39;UBERON:0006240!2.98e-13!39;UBERON:0003056!5.81e-13!49;UBERON:0002791!5.53e-12!29;UBERON:0003528!5.53e-12!29;UBERON:0001893!5.53e-12!29;UBERON:0007811!8.28e-09!86;UBERON:0000153!2.10e-08!94;UBERON:0000956!1.51e-07!21;UBERON:0001869!1.51e-07!21;UBERON:0000203!1.51e-07!21;UBERON:0002619!3.76e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.71e-25,73;UBERON:0001016,3.75e-23,75;UBERON:0000073,1.08e-20,54;UBERON:0004121,6.36e-20,95;UBERON:0000924,6.36e-20,95;UBERON:0006601,6.36e-20,95;UBERON:0001049,3.23e-19,52;UBERON:0005068,3.23e-19,52;UBERON:0006241,3.23e-19,52;UBERON:0007135,3.23e-19,52;UBERON:0002346,1.90e-18,64;UBERON:0003075,1.90e-18,64;UBERON:0007284,1.90e-18,64;UBERON:0000955,9.64e-17,47;UBERON:0006238,9.64e-17,47;UBERON:0002616,4.76e-16,46;UBERON:0010371,4.76e-15,73;UBERON:0002020,9.84e-15,34;UBERON:0003080,3.11e-14,40;UBERON:0002780,1.33e-13,39;UBERON:0001890,1.33e-13,39;UBERON:0006240,1.33e-13,39;UBERON:0003056,4.43e-13,49;UBERON:0003528,3.48e-12,29;UBERON:0002791,3.48e-12,29;UBERON:0001893,3.48e-12,29;UBERON:0010314,1.61e-08,92;UBERON:0000956,1.81e-07,21;UBERON:0001869,1.81e-07,21;UBERON:0000203,1.81e-07,21;UBERON:0002619,2.83e-07,17|phase1_expression=0.960893082628764,1.74487703819681,3.63999391511629,2.72217790176147,1.50268718983904,0.33575854382378,1.86890112476421,0.774739940649458,2.81577444303333,5.85161315804984,0.34243593645101,0.478632953972018,4.28001824828014,2.62261207256992,0,0.607425802169478,0,0.946386496074713,0.959801035240171,0.42438965179803,1.53077922271926,0.297872853602656,0,1.75991665072747,0.22940928106717,2.29692785646008,1.29228598847722,0.646413698057667,2.28028103347649,2.01624103807945,0.221730510655305,1.27006134691926,0,0,0.288851619751275,0.498703936075477,0.612508068787107,0,0.7813353445238,1.0470474879476,1.76469446409304,0,0.485510353031154,1.00717454380462,1.62203089951223,1.65192076945513,6.25913075478431,3.05235218932625,3.07560655828261,2.52758868796568,1.39986421625363,2.87505128729943,0.335565212115473,16.6833292662609,13.779845764841,2.31533492432352,1.14613375975503,1.54701627683233,3.43937983461316,4.23192783417626,10.1413024560989,4.06613438482959,3.55717918444456,1.3498495759221,0,1.4209602298922,2.69640099466564,4.99483796918021,1.8664130215526,2.97013064329719,0.841299845405528,2.85650984403804,4.19650227808066,2.20483438586917,2.30029130443767,0.919218786610021,4.40463523997555,4.85211884723713,4.6081959976873,5.80299666012853,6.31264740856627,6.25096044668112,3.62937898701795,3.37657566019008,4.12555268997387,3.24091444021034,4.12877874317399,2.98239113320481,0.530083353332288,0.755715601067855,1.15945795480671,0,0,0.539703191637817,0,0.448026887097336,0.842666520790511,1.36344258062446,1.03914401841148,1.41335829804136,0.845060518660083,1.28326477414318,0,0,1.08245520505607,0.760079596425296,1.51657333504435,0.79928715803342,2.84831672011889,1.1875371125186,1.04091196059682,0.913396434936424,0.922461989024234,1.05505848386836,2.11659672844269,0.628332956648377,1.48316980640624,1.15679485535929,0.884610551949874,0,0.220841518460394,0.969750506270444,3.72783522436244,3.80615036115011,0.83778682725382,2.04365644166873,0.359445373517761,0,0.254140454146129,4.94309110035915,5.49000723382352,4.14659361972453,3.30266208365325,2.55715457330331,5.194701113989,3.0825839982874,1.01839363850316,0.497627882440372,1.51633655060205,2.52530227063769,0.910843100738926,1.14951052216736,1.26043490863744,1.05493372485001,1.49680298132921,1.15302348256365,1.21812241927647,2.58703370739016,0.862271971731369,2.08016688184601,1.05570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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13498 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=O35126 | |||
|association_with_transcript=123bp_to_NM_007881,uc009drr.1_5end | |||
|cluster_id=chr6:124706341..124706381,- | |||
|description=CAGE_peak_5_at_Atn1_5end | |||
|id=chr6:124706341..124706381,- | |||
|ontology_enrichment_celltype=CL:0002319!2.77e-11!43;CL:0000221!7.34e-11!44;CL:0000133!7.34e-11!44;CL:0000055!1.73e-10!50;CL:0000117!4.96e-10!23;CL:0000337!4.96e-10!23;CL:0000540!1.69e-09!33;CL:0000047!1.69e-09!33;CL:0000031!1.69e-09!33;CL:0000404!1.69e-09!33;CL:0000393!1.76e-09!39;CL:0000211!1.76e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,7.23e-11,43;CL:0000221,3.19e-10,44;CL:0000133,3.19e-10,44;CL:0000117,4.51e-10,23;CL:0000337,4.51e-10,23;CL:0000393,3.79e-09,39;CL:0000211,3.79e-09,39;CL:0000540,4.30e-09,33;CL:0000047,4.30e-09,33;CL:0000031,4.30e-09,33;CL:0000404,4.30e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.72e-24!73;UBERON:0005743!1.72e-24!73;UBERON:0000073!4.16e-23!75;UBERON:0001016!4.16e-23!75;UBERON:0004121!1.02e-19!102;UBERON:0000924!1.02e-19!102;UBERON:0006601!1.02e-19!102;UBERON:0001049!9.66e-19!52;UBERON:0005068!9.66e-19!52;UBERON:0006241!9.66e-19!52;UBERON:0007135!9.66e-19!52;UBERON:0000955!3.01e-18!50;UBERON:0006238!3.01e-18!50;UBERON:0002616!1.41e-17!49;UBERON:0002346!1.86e-16!71;UBERON:0003075!1.86e-16!71;UBERON:0007284!1.86e-16!71;UBERON:0000033!1.93e-16!63;UBERON:0002020!2.32e-14!34;UBERON:0003080!7.61e-14!40;UBERON:0002780!2.98e-13!39;UBERON:0001890!2.98e-13!39;UBERON:0006240!2.98e-13!39;UBERON:0003056!5.81e-13!49;UBERON:0002791!5.53e-12!29;UBERON:0003528!5.53e-12!29;UBERON:0001893!5.53e-12!29;UBERON:0007811!8.28e-09!86;UBERON:0000153!2.10e-08!94;UBERON:0000956!1.51e-07!21;UBERON:0001869!1.51e-07!21;UBERON:0000203!1.51e-07!21;UBERON:0002619!3.76e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.71e-25,73;UBERON:0001016,3.75e-23,75;UBERON:0000073,1.08e-20,54;UBERON:0004121,6.36e-20,95;UBERON:0000924,6.36e-20,95;UBERON:0006601,6.36e-20,95;UBERON:0001049,3.23e-19,52;UBERON:0005068,3.23e-19,52;UBERON:0006241,3.23e-19,52;UBERON:0007135,3.23e-19,52;UBERON:0002346,1.90e-18,64;UBERON:0003075,1.90e-18,64;UBERON:0007284,1.90e-18,64;UBERON:0000955,9.64e-17,47;UBERON:0006238,9.64e-17,47;UBERON:0002616,4.76e-16,46;UBERON:0010371,4.76e-15,73;UBERON:0002020,9.84e-15,34;UBERON:0003080,3.11e-14,40;UBERON:0002780,1.33e-13,39;UBERON:0001890,1.33e-13,39;UBERON:0006240,1.33e-13,39;UBERON:0003056,4.43e-13,49;UBERON:0003528,3.48e-12,29;UBERON:0002791,3.48e-12,29;UBERON:0001893,3.48e-12,29;UBERON:0010314,1.61e-08,92;UBERON:0000956,1.81e-07,21;UBERON:0001869,1.81e-07,21;UBERON:0000203,1.81e-07,21;UBERON:0002619,2.83e-07,17 | |||
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| |||
|short_description=p5@Atn1 | |||
}} |
Latest revision as of 16:04, 26 September 2015
Short description: | p5@Atn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Atn1_5end |
Coexpression cluster: | NA |
Association with transcript: | 123bp_to_NM_007881, uc009drr.1_5end |
EntrezGene: | Atn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 7.23e-11 | 43 |
ectodermal cell | 3.19e-10 | 44 |
neurectodermal cell | 3.19e-10 | 44 |
CNS neuron (sensu Vertebrata) | 4.51e-10 | 23 |
neuroblast (sensu Vertebrata) | 4.51e-10 | 23 |
electrically responsive cell | 3.79e-09 | 39 |
electrically active cell | 3.79e-09 | 39 |
neuron | 4.30e-09 | 33 |
neuronal stem cell | 4.30e-09 | 33 |
neuroblast | 4.30e-09 | 33 |
electrically signaling cell | 4.30e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.71e-25 | 73 |
nervous system | 3.75e-23 | 75 |
regional part of nervous system | 1.08e-20 | 54 |
ectoderm-derived structure | 6.36e-20 | 95 |
ectoderm | 6.36e-20 | 95 |
presumptive ectoderm | 6.36e-20 | 95 |
neural tube | 3.23e-19 | 52 |
neural rod | 3.23e-19 | 52 |
future spinal cord | 3.23e-19 | 52 |
neural keel | 3.23e-19 | 52 |
neurectoderm | 1.90e-18 | 64 |
neural plate | 1.90e-18 | 64 |
presumptive neural plate | 1.90e-18 | 64 |
brain | 9.64e-17 | 47 |
future brain | 9.64e-17 | 47 |
regional part of brain | 4.76e-16 | 46 |
ecto-epithelium | 4.76e-15 | 73 |
gray matter | 9.84e-15 | 34 |
anterior neural tube | 3.11e-14 | 40 |
regional part of forebrain | 1.33e-13 | 39 |
forebrain | 1.33e-13 | 39 |
future forebrain | 1.33e-13 | 39 |
pre-chordal neural plate | 4.43e-13 | 49 |
brain grey matter | 3.48e-12 | 29 |
regional part of telencephalon | 3.48e-12 | 29 |
telencephalon | 3.48e-12 | 29 |
structure with developmental contribution from neural crest | 1.61e-08 | 92 |
cerebral cortex | 1.81e-07 | 21 |
cerebral hemisphere | 1.81e-07 | 21 |
pallium | 1.81e-07 | 21 |
regional part of cerebral cortex | 2.83e-07 | 17 |