FFCP PHASE1:Mm9::chr11:102157932..102157995,-: Difference between revisions
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{{FFCP|EntrezGene=217218|HGNC=|MCL_coexpression_id=13|UniProt=A2AWT3|association_with_transcript=0bp_to_ENSMUST00000073234,ENSMUST00000107132,NM_001098836,NM_001098837,uc007lrg.1,uc007lrh.1_5end|description=CAGE_peak_4_at_Atxn7l3_5end|id=chr11:102157932..102157995,-|ontology_enrichment_celltype=CL:0000117!4.08e-15!23;CL:0000337!4.08e-15!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.15e-15,23;CL:0000337,3.15e-15,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.42e-20!52;UBERON:0005068!5.42e-20!52;UBERON:0006241!5.42e-20!52;UBERON:0007135!5.42e-20!52;UBERON:0002020!5.53e-19!34;UBERON:0000955!1.56e-18!50;UBERON:0006238!1.56e-18!50;UBERON:0002616!4.21e-18!49;UBERON:0000033!1.42e-16!63;UBERON:0001017!4.14e-16!73;UBERON:0005743!4.14e-16!73;UBERON:0002791!1.32e-15!29;UBERON:0003528!1.32e-15!29;UBERON:0001893!1.32e-15!29;UBERON:0000073!2.29e-15!75;UBERON:0001016!2.29e-15!75;UBERON:0003080!1.73e-14!40;UBERON:0002780!5.76e-14!39;UBERON:0001890!5.76e-14!39;UBERON:0006240!5.76e-14!39;UBERON:0002346!8.97e-14!71;UBERON:0003075!8.97e-14!71;UBERON:0007284!8.97e-14!71;UBERON:0003056!3.02e-13!49;UBERON:0000956!8.28e-12!21;UBERON:0001869!8.28e-12!21;UBERON:0000203!8.28e-12!21;UBERON:0004121!1.40e-11!102;UBERON:0000924!1.40e-11!102;UBERON:0006601!1.40e-11!102;UBERON:0007811!7.83e-11!86;UBERON:0000153!1.93e-10!94;UBERON:0002619!9.17e-10!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.18e-21,54;UBERON:0001049,3.81e-20,52;UBERON:0005068,3.81e-20,52;UBERON:0006241,3.81e-20,52;UBERON:0007135,3.81e-20,52;UBERON:0002020,3.97e-19,34;UBERON:0000955,1.15e-16,47;UBERON:0006238,1.15e-16,47;UBERON:0001017,1.50e-16,73;UBERON:0002616,3.07e-16,46;UBERON:0002346,4.64e-16,64;UBERON:0003075,4.64e-16,64;UBERON:0007284,4.64e-16,64;UBERON:0001016,8.61e-16,75;UBERON:0003528,1.01e-15,29;UBERON:0002791,1.01e-15,29;UBERON:0001893,1.01e-15,29;UBERON:0003080,1.35e-14,40;UBERON:0002780,4.55e-14,39;UBERON:0001890,4.55e-14,39;UBERON:0006240,4.55e-14,39;UBERON:0010371,4.92e-14,73;UBERON:0003056,2.42e-13,49;UBERON:0004121,4.11e-13,95;UBERON:0000924,4.11e-13,95;UBERON:0006601,4.11e-13,95;UBERON:0000956,6.82e-12,21;UBERON:0001869,6.82e-12,21;UBERON:0000203,6.82e-12,21;UBERON:0002619,7.84e-10,17;UBERON:0010314,1.20e-09,92|phase1_expression=4.32401887182944,5.23463111459042,3.63999391511629,3.93203474698879,1.50268718983904,1.34303417529512,0.934450562382103,1.54947988129892,2.111830832275,1.63845168425395,3.4243593645101,2.39316476986009,1.02720437958723,1.83582845079895,1.33243904726265,0.404950534779652,0,1.26184866143295,0.274228867211478,1.27316895539409,3.656861476496,1.09220046320974,1.30599894569468,1.43993180514066,0.68822784320151,4.59385571292016,3.01533397311352,2.58565479223067,1.52018735565099,2.01624103807945,1.55211357458713,1.27006134691926,1.23012957516914,0,1.44425809875637,1.32987716286794,1.02084678131185,3.34825304589526,3.906676722619,2.09409497589519,4.1176204162171,2.04913645487534,7.2826552954673,0.377690453926732,1.11514624341466,1.83546752161682,2.34717403304412,2.18025156380447,3.29529274101708,3.11087838518853,2.65974201088189,0,0.838913030288682,0.725362142011344,1.00828139742739,1.54355661621568,2.29226751951005,1.54701627683233,15.3760510253294,13.7537654610729,11.4089652631112,5.08266798103698,2.66788438833342,3.5995988691256,0.988866362566974,2.1314403448383,2.09720077362883,4.61061966385865,7.05089363697648,7.83034442323806,6.30974884054146,16.2821061110168,14.5773237028065,8.81933754347669,14.5685115947719,5.51531271966013,11.0115880999389,18.386976684267,16.1286859919056,14.7712642257817,24.1527379110361,13.022834263919,13.959149950069,4.50210088025344,9.93188610549266,10.9012576625257,16.3727432918968,11.9295645328192,1.28734528666413,1.51143120213571,0.869593466105033,1.72084775396277,0.679971333707751,1.07940638327563,0,0.448026887097336,1.40444420131752,1.70430322578058,2.85764605063156,1.7666978725517,2.53518155598025,5.13305909657271,0,14.2213340630666,0.649473123033642,0.506719730950197,0.505524445014783,1.94112595522402,0.258937883647172,0.742210695324124,1.90833859442749,1.52232739156071,2.7673859670727,1.50722640552623,1.29347577849275,1.50799909595611,3.21353458054686,0.433798070759735,0.884610551949874,1.94120219936891,0.883366073841574,1.93950101254089,0,2.92780797011547,4.60782754989601,0.510914110417183,1.31796636956512,1.19980546198682,1.01656181658452,7.63932260964596,1.83000241127451,9.5497307605777,11.4724051326902,12.5300574091862,6.2336413367868,8.11206315338788,2.24046600470696,0.746441823660558,2.27450482590307,1.26265113531884,1.82168620147785,2.29902104433473,2.70093194708024,1.80845781402858,2.78949646520444,2.562274405697,2.06143794031403,1.29351685369508,2.58681591519411,1.70195472151037,2.63926686245923,2.6303487891309,3.05851974148158,1.0447564995665,1.85203922767149,1.99034266818493,1.40442637462647,1.28673953557358,1.70498099637356,1.24275463521301,1.17263029990548,2.16074473753218,2.60419209143731,1.77087808572663,1.696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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=217218 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=A2AWT3 | |||
|association_with_transcript=0bp_to_ENSMUST00000073234,ENSMUST00000107132,NM_001098836,NM_001098837,uc007lrg.1,uc007lrh.1_5end | |||
|cluster_id=chr11:102157932..102157995,- | |||
|description=CAGE_peak_4_at_Atxn7l3_5end | |||
|id=chr11:102157932..102157995,- | |||
|ontology_enrichment_celltype=CL:0000117!4.08e-15!23;CL:0000337!4.08e-15!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.15e-15,23;CL:0000337,3.15e-15,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.42e-20!52;UBERON:0005068!5.42e-20!52;UBERON:0006241!5.42e-20!52;UBERON:0007135!5.42e-20!52;UBERON:0002020!5.53e-19!34;UBERON:0000955!1.56e-18!50;UBERON:0006238!1.56e-18!50;UBERON:0002616!4.21e-18!49;UBERON:0000033!1.42e-16!63;UBERON:0001017!4.14e-16!73;UBERON:0005743!4.14e-16!73;UBERON:0002791!1.32e-15!29;UBERON:0003528!1.32e-15!29;UBERON:0001893!1.32e-15!29;UBERON:0000073!2.29e-15!75;UBERON:0001016!2.29e-15!75;UBERON:0003080!1.73e-14!40;UBERON:0002780!5.76e-14!39;UBERON:0001890!5.76e-14!39;UBERON:0006240!5.76e-14!39;UBERON:0002346!8.97e-14!71;UBERON:0003075!8.97e-14!71;UBERON:0007284!8.97e-14!71;UBERON:0003056!3.02e-13!49;UBERON:0000956!8.28e-12!21;UBERON:0001869!8.28e-12!21;UBERON:0000203!8.28e-12!21;UBERON:0004121!1.40e-11!102;UBERON:0000924!1.40e-11!102;UBERON:0006601!1.40e-11!102;UBERON:0007811!7.83e-11!86;UBERON:0000153!1.93e-10!94;UBERON:0002619!9.17e-10!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.18e-21,54;UBERON:0001049,3.81e-20,52;UBERON:0005068,3.81e-20,52;UBERON:0006241,3.81e-20,52;UBERON:0007135,3.81e-20,52;UBERON:0002020,3.97e-19,34;UBERON:0000955,1.15e-16,47;UBERON:0006238,1.15e-16,47;UBERON:0001017,1.50e-16,73;UBERON:0002616,3.07e-16,46;UBERON:0002346,4.64e-16,64;UBERON:0003075,4.64e-16,64;UBERON:0007284,4.64e-16,64;UBERON:0001016,8.61e-16,75;UBERON:0003528,1.01e-15,29;UBERON:0002791,1.01e-15,29;UBERON:0001893,1.01e-15,29;UBERON:0003080,1.35e-14,40;UBERON:0002780,4.55e-14,39;UBERON:0001890,4.55e-14,39;UBERON:0006240,4.55e-14,39;UBERON:0010371,4.92e-14,73;UBERON:0003056,2.42e-13,49;UBERON:0004121,4.11e-13,95;UBERON:0000924,4.11e-13,95;UBERON:0006601,4.11e-13,95;UBERON:0000956,6.82e-12,21;UBERON:0001869,6.82e-12,21;UBERON:0000203,6.82e-12,21;UBERON:0002619,7.84e-10,17;UBERON:0010314,1.20e-09,92 | |||
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| |||
|short_description=p4@Atxn7l3 | |||
}} |
Latest revision as of 18:07, 26 September 2015
Short description: | p4@Atxn7l3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Atxn7l3_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000073234, ENSMUST00000107132, NM_001098836, NM_001098837, uc007lrg.1, uc007lrh.1_5end |
EntrezGene: | Atxn7l3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.15e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.15e-15 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.18e-21 | 54 |
neural tube | 3.81e-20 | 52 |
neural rod | 3.81e-20 | 52 |
future spinal cord | 3.81e-20 | 52 |
neural keel | 3.81e-20 | 52 |
gray matter | 3.97e-19 | 34 |
brain | 1.15e-16 | 47 |
future brain | 1.15e-16 | 47 |
central nervous system | 1.50e-16 | 73 |
regional part of brain | 3.07e-16 | 46 |
neurectoderm | 4.64e-16 | 64 |
neural plate | 4.64e-16 | 64 |
presumptive neural plate | 4.64e-16 | 64 |
nervous system | 8.61e-16 | 75 |
brain grey matter | 1.01e-15 | 29 |
regional part of telencephalon | 1.01e-15 | 29 |
telencephalon | 1.01e-15 | 29 |
anterior neural tube | 1.35e-14 | 40 |
regional part of forebrain | 4.55e-14 | 39 |
forebrain | 4.55e-14 | 39 |
future forebrain | 4.55e-14 | 39 |
ecto-epithelium | 4.92e-14 | 73 |
pre-chordal neural plate | 2.42e-13 | 49 |
ectoderm-derived structure | 4.11e-13 | 95 |
ectoderm | 4.11e-13 | 95 |
presumptive ectoderm | 4.11e-13 | 95 |
cerebral cortex | 6.82e-12 | 21 |
cerebral hemisphere | 6.82e-12 | 21 |
pallium | 6.82e-12 | 21 |
regional part of cerebral cortex | 7.84e-10 | 17 |
structure with developmental contribution from neural crest | 1.20e-09 | 92 |