FFCP PHASE1:Mm9::chr17:66122005..66122016,-: Difference between revisions
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{{FFCP|EntrezGene=106572|HGNC=|UniProt=Q3TM43|association_with_transcript=-23bp_to_ENSMUST00000165932_5end|description=CAGE_peak_2_at_Rab31_5end|id=chr17:66122005..66122016,-|ontology_enrichment_celltype=CL:0002319!7.10e-17!43;CL:0000221!9.79e-17!44;CL:0000133!9.79e-17!44;CL:0000055!2.21e-16!50;CL:0000393!3.50e-12!39;CL:0000211!3.50e-12!39;CL:0000540!1.41e-11!33;CL:0000047!1.41e-11!33;CL:0000031!1.41e-11!33;CL:0000404!1.41e-11!33;CL:0000117!4.77e-09!23;CL:0000337!4.77e-09!23;CL:0002321!1.22e-08!70;CL:0000220!1.22e-08!70|ontology_enrichment_celltype_v019_2=CL:0002319,3.07e-18,43;CL:0000221,4.37e-18,44;CL:0000133,4.37e-18,44;CL:0000393,3.51e-13,39;CL:0000211,3.51e-13,39;CL:0000540,1.50e-12,33;CL:0000047,1.50e-12,33;CL:0000031,1.50e-12,33;CL:0000404,1.50e-12,33;CL:0002321,1.63e-10,70;CL:0000117,7.52e-10,23;CL:0000337,7.52e-10,23;CL:0000333,7.43e-07,10;CL:0000095,7.43e-07,10;CL:0000243,7.43e-07,10;CL:0000123,7.43e-07,10;CL:0000125,7.43e-07,10;CL:0000030,7.43e-07,10;CL:0000339,7.43e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.99e-18!75;UBERON:0001016!1.99e-18!75;UBERON:0001017!1.65e-17!73;UBERON:0005743!1.65e-17!73;UBERON:0004121!2.00e-13!102;UBERON:0000924!2.00e-13!102;UBERON:0006601!2.00e-13!102;UBERON:0002020!2.43e-12!34;UBERON:0001049!5.96e-11!52;UBERON:0005068!5.96e-11!52;UBERON:0006241!5.96e-11!52;UBERON:0007135!5.96e-11!52;UBERON:0002791!1.09e-10!29;UBERON:0003528!1.09e-10!29;UBERON:0001893!1.09e-10!29;UBERON:0002346!1.12e-09!71;UBERON:0003075!1.12e-09!71;UBERON:0007284!1.12e-09!71;UBERON:0002780!2.09e-09!39;UBERON:0001890!2.09e-09!39;UBERON:0006240!2.09e-09!39;UBERON:0003080!2.51e-09!40;UBERON:0000955!6.61e-09!50;UBERON:0006238!6.61e-09!50;UBERON:0000956!7.45e-09!21;UBERON:0001869!7.45e-09!21;UBERON:0000203!7.45e-09!21;UBERON:0002616!7.93e-09!49;UBERON:0003056!7.95e-08!49;UBERON:0000033!4.67e-07!63;UBERON:0002619!6.87e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.01e-18,75;UBERON:0001017,2.74e-17,73;UBERON:0004121,4.17e-13,95;UBERON:0000924,4.17e-13,95;UBERON:0006601,4.17e-13,95;UBERON:0002020,9.12e-13,34;UBERON:0003528,5.28e-11,29;UBERON:0002791,5.28e-11,29;UBERON:0001893,5.28e-11,29;UBERON:0001049,3.08e-10,52;UBERON:0005068,3.08e-10,52;UBERON:0006241,3.08e-10,52;UBERON:0007135,3.08e-10,52;UBERON:0000073,6.62e-10,54;UBERON:0000956,4.86e-09,21;UBERON:0001869,4.86e-09,21;UBERON:0000203,4.86e-09,21;UBERON:0002780,4.90e-09,39;UBERON:0001890,4.90e-09,39;UBERON:0006240,4.90e-09,39;UBERON:0002346,5.25e-09,64;UBERON:0003075,5.25e-09,64;UBERON:0007284,5.25e-09,64;UBERON:0003080,5.75e-09,40;UBERON:0000955,1.89e-08,47;UBERON:0006238,1.89e-08,47;UBERON:0002616,2.29e-08,46;UBERON:0010371,1.33e-07,73;UBERON:0003056,4.06e-07,49;UBERON:0002619,5.89e-07,17|phase1_expression=2.88267924788629,0.348975407639361,0.909998478779072,0.30246421130683,0.500895729946347,0.33575854382378,0.467225281191051,0,0,0,0,0,0,0,0.333109761815663,0.404950534779652,0,0.473193248037357,0.274228867211478,0,0.595303031057488,0.297872853602656,0,0.799962113967033,0.91763712426868,0,1.29228598847722,0.430942465371778,0.190023419456374,0.504060259519861,0.665191531965914,0,0,0,0,0,0,5.02237956884289,5.4693474116666,2.09409497589519,5.29408339227913,2.73218193983378,3.39857247121808,1.6366586336825,2.33166941804883,2.75320128242522,1.56478268869608,8.93903141159831,7.68901639570651,4.6663175777828,4.19959264876088,10.062679505548,0.671130424230945,0,0,1.02903774414379,2.29226751951005,1.54701627683233,4.65327859977075,3.70293685490423,5.07065122804943,1.69422266034566,1.77858959222228,4.94944844504769,0.988866362566974,4.2628806896766,4.19440154725767,6.53171119046643,3.52544681848824,3.78016627328734,4.6271491497304,2.28520787523043,3.09215957332259,5.02212276781312,5.36734637702124,2.75765635983006,0,2.042997409363,1.99688493233117,6.19865552331911,6.58711033937349,5.2091337055676,2.23346399201105,1.68828783009504,1.68078072554491,1.76777151284201,2.70506193518296,2.98239113320481,2.95332153999418,2.94729084416464,2.02905142091174,0,0,0,0,0,0.702222100658759,2.55645483867087,1.55871602761721,1.41335829804136,1.40843419776681,5.13305909657271,2.54805239706646,0,1.29894624606728,2.28023878927589,1.01104889002957,0.79928715803342,1.29468941823586,2.67195850316685,1.04091196059682,1.82679286987285,0.461230994512117,0.753613202763113,1.29347577849275,1.75933227861546,2.22475470960936,0.433798070759735,1.76922110389975,1.29413479957927,1.10420759230197,0.969750506270444,0,1.46390398505774,0.83778682725382,0,1.67741174308288,4.19931911695385,1.90605340609597,1.3481157546434,0.457500602818626,3.26701315493447,2.9550134432687,1.53429274398198,3.32460871295296,2.10913641988085,1.42575109390443,0.746441823660558,0.252722758433675,0.631325567659422,0.520481771850815,1.37941262660084,2.52086981727489,1.50704817835715,1.15662048557257,1.66547836370305,0.655912071918102,0.776110112217047,2.37124792226126,2.64748512234947,2.28736461413134,3.5071317188412,0.834141747676794,0.696504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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=106572 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q3TM43 | |||
|association_with_transcript=-23bp_to_ENSMUST00000165932_5end | |||
|cluster_id=chr17:66122005..66122016,- | |||
|description=CAGE_peak_2_at_Rab31_5end | |||
|id=chr17:66122005..66122016,- | |||
|ontology_enrichment_celltype=CL:0002319!7.10e-17!43;CL:0000221!9.79e-17!44;CL:0000133!9.79e-17!44;CL:0000055!2.21e-16!50;CL:0000393!3.50e-12!39;CL:0000211!3.50e-12!39;CL:0000540!1.41e-11!33;CL:0000047!1.41e-11!33;CL:0000031!1.41e-11!33;CL:0000404!1.41e-11!33;CL:0000117!4.77e-09!23;CL:0000337!4.77e-09!23;CL:0002321!1.22e-08!70;CL:0000220!1.22e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.07e-18,43;CL:0000221,4.37e-18,44;CL:0000133,4.37e-18,44;CL:0000393,3.51e-13,39;CL:0000211,3.51e-13,39;CL:0000540,1.50e-12,33;CL:0000047,1.50e-12,33;CL:0000031,1.50e-12,33;CL:0000404,1.50e-12,33;CL:0002321,1.63e-10,70;CL:0000117,7.52e-10,23;CL:0000337,7.52e-10,23;CL:0000333,7.43e-07,10;CL:0000095,7.43e-07,10;CL:0000243,7.43e-07,10;CL:0000123,7.43e-07,10;CL:0000125,7.43e-07,10;CL:0000030,7.43e-07,10;CL:0000339,7.43e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.99e-18!75;UBERON:0001016!1.99e-18!75;UBERON:0001017!1.65e-17!73;UBERON:0005743!1.65e-17!73;UBERON:0004121!2.00e-13!102;UBERON:0000924!2.00e-13!102;UBERON:0006601!2.00e-13!102;UBERON:0002020!2.43e-12!34;UBERON:0001049!5.96e-11!52;UBERON:0005068!5.96e-11!52;UBERON:0006241!5.96e-11!52;UBERON:0007135!5.96e-11!52;UBERON:0002791!1.09e-10!29;UBERON:0003528!1.09e-10!29;UBERON:0001893!1.09e-10!29;UBERON:0002346!1.12e-09!71;UBERON:0003075!1.12e-09!71;UBERON:0007284!1.12e-09!71;UBERON:0002780!2.09e-09!39;UBERON:0001890!2.09e-09!39;UBERON:0006240!2.09e-09!39;UBERON:0003080!2.51e-09!40;UBERON:0000955!6.61e-09!50;UBERON:0006238!6.61e-09!50;UBERON:0000956!7.45e-09!21;UBERON:0001869!7.45e-09!21;UBERON:0000203!7.45e-09!21;UBERON:0002616!7.93e-09!49;UBERON:0003056!7.95e-08!49;UBERON:0000033!4.67e-07!63;UBERON:0002619!6.87e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.01e-18,75;UBERON:0001017,2.74e-17,73;UBERON:0004121,4.17e-13,95;UBERON:0000924,4.17e-13,95;UBERON:0006601,4.17e-13,95;UBERON:0002020,9.12e-13,34;UBERON:0003528,5.28e-11,29;UBERON:0002791,5.28e-11,29;UBERON:0001893,5.28e-11,29;UBERON:0001049,3.08e-10,52;UBERON:0005068,3.08e-10,52;UBERON:0006241,3.08e-10,52;UBERON:0007135,3.08e-10,52;UBERON:0000073,6.62e-10,54;UBERON:0000956,4.86e-09,21;UBERON:0001869,4.86e-09,21;UBERON:0000203,4.86e-09,21;UBERON:0002780,4.90e-09,39;UBERON:0001890,4.90e-09,39;UBERON:0006240,4.90e-09,39;UBERON:0002346,5.25e-09,64;UBERON:0003075,5.25e-09,64;UBERON:0007284,5.25e-09,64;UBERON:0003080,5.75e-09,40;UBERON:0000955,1.89e-08,47;UBERON:0006238,1.89e-08,47;UBERON:0002616,2.29e-08,46;UBERON:0010371,1.33e-07,73;UBERON:0003056,4.06e-07,49;UBERON:0002619,5.89e-07,17 | |||
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| |||
|short_description=p2@Rab31 | |||
}} |
Latest revision as of 19:08, 26 September 2015
Short description: | p2@Rab31 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rab31_5end |
Coexpression cluster: | NA |
Association with transcript: | -23bp_to_ENSMUST00000165932_5end |
EntrezGene: | Rab31 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.07e-18 | 43 |
ectodermal cell | 4.37e-18 | 44 |
neurectodermal cell | 4.37e-18 | 44 |
electrically responsive cell | 3.51e-13 | 39 |
electrically active cell | 3.51e-13 | 39 |
neuron | 1.50e-12 | 33 |
neuronal stem cell | 1.50e-12 | 33 |
neuroblast | 1.50e-12 | 33 |
electrically signaling cell | 1.50e-12 | 33 |
embryonic cell | 1.63e-10 | 70 |
CNS neuron (sensu Vertebrata) | 7.52e-10 | 23 |
neuroblast (sensu Vertebrata) | 7.52e-10 | 23 |
migratory neural crest cell | 7.43e-07 | 10 |
neuron associated cell | 7.43e-07 | 10 |
glial cell (sensu Vertebrata) | 7.43e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 7.43e-07 | 10 |
glial cell | 7.43e-07 | 10 |
glioblast | 7.43e-07 | 10 |
glioblast (sensu Vertebrata) | 7.43e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.01e-18 | 75 |
central nervous system | 2.74e-17 | 73 |
ectoderm-derived structure | 4.17e-13 | 95 |
ectoderm | 4.17e-13 | 95 |
presumptive ectoderm | 4.17e-13 | 95 |
gray matter | 9.12e-13 | 34 |
brain grey matter | 5.28e-11 | 29 |
regional part of telencephalon | 5.28e-11 | 29 |
telencephalon | 5.28e-11 | 29 |
neural tube | 3.08e-10 | 52 |
neural rod | 3.08e-10 | 52 |
future spinal cord | 3.08e-10 | 52 |
neural keel | 3.08e-10 | 52 |
regional part of nervous system | 6.62e-10 | 54 |
cerebral cortex | 4.86e-09 | 21 |
cerebral hemisphere | 4.86e-09 | 21 |
pallium | 4.86e-09 | 21 |
regional part of forebrain | 4.90e-09 | 39 |
forebrain | 4.90e-09 | 39 |
future forebrain | 4.90e-09 | 39 |
neurectoderm | 5.25e-09 | 64 |
neural plate | 5.25e-09 | 64 |
presumptive neural plate | 5.25e-09 | 64 |
anterior neural tube | 5.75e-09 | 40 |
brain | 1.89e-08 | 47 |
future brain | 1.89e-08 | 47 |
regional part of brain | 2.29e-08 | 46 |
ecto-epithelium | 1.33e-07 | 73 |
pre-chordal neural plate | 4.06e-07 | 49 |
regional part of cerebral cortex | 5.89e-07 | 17 |