FFCP PHASE1:Mm9::chr9:55785981..55786009,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr9:55785981..55786009,- to FFCP PHASE1:Mm9::chr9:55785981..55786009,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=244891 | |EntrezGene=244891 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=376 | |||
|TSSclassifier=NA | |||
|UniProt=F8VQ70,Q501L8,Q8BIZ8 | |UniProt=F8VQ70,Q501L8,Q8BIZ8 | ||
|association_with_transcript=-59bp_to_NM_001081341,uc009pso.1,uc009psp.1,uc012gtu.1_5end | |||
|cluster_id=chr9:55785981..55786009,- | |||
|description=CAGE_peak_2_at_Scaper_5end | |||
|id=chr9:55785981..55786009,- | |||
|ontology_enrichment_celltype=CL:0000117!6.72e-12!23;CL:0000337!6.72e-12!23;CL:0000540!1.13e-09!33;CL:0000047!1.13e-09!33;CL:0000031!1.13e-09!33;CL:0000404!1.13e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.78e-12,23;CL:0000337,2.78e-12,23;CL:0000540,1.44e-09,33;CL:0000047,1.44e-09,33;CL:0000031,1.44e-09,33;CL:0000404,1.44e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.57e-18!63;UBERON:0001049!1.92e-17!52;UBERON:0005068!1.92e-17!52;UBERON:0006241!1.92e-17!52;UBERON:0007135!1.92e-17!52;UBERON:0001017!4.01e-17!73;UBERON:0005743!4.01e-17!73;UBERON:0002346!1.43e-16!71;UBERON:0003075!1.43e-16!71;UBERON:0007284!1.43e-16!71;UBERON:0000955!3.56e-16!50;UBERON:0006238!3.56e-16!50;UBERON:0000073!8.98e-16!75;UBERON:0001016!8.98e-16!75;UBERON:0003056!9.58e-16!49;UBERON:0002616!1.39e-15!49;UBERON:0004121!3.29e-15!102;UBERON:0000924!3.29e-15!102;UBERON:0006601!3.29e-15!102;UBERON:0007811!1.72e-14!86;UBERON:0000153!6.08e-14!94;UBERON:0002020!7.42e-14!34;UBERON:0003080!1.90e-13!40;UBERON:0002780!5.20e-13!39;UBERON:0001890!5.20e-13!39;UBERON:0006240!5.20e-13!39;UBERON:0002791!3.76e-11!29;UBERON:0003528!3.76e-11!29;UBERON:0001893!3.76e-11!29;UBERON:0000956!2.10e-08!21;UBERON:0001869!2.10e-08!21;UBERON:0000203!2.10e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.49e-19,64;UBERON:0003075,3.49e-19,64;UBERON:0007284,3.49e-19,64;UBERON:0000073,9.14e-19,54;UBERON:0001049,8.99e-18,52;UBERON:0005068,8.99e-18,52;UBERON:0006241,8.99e-18,52;UBERON:0007135,8.99e-18,52;UBERON:0010371,2.22e-17,73;UBERON:0001017,6.82e-17,73;UBERON:0004121,1.10e-16,95;UBERON:0000924,1.10e-16,95;UBERON:0006601,1.10e-16,95;UBERON:0003056,4.62e-16,49;UBERON:0001016,1.49e-15,75;UBERON:0000955,4.08e-15,47;UBERON:0006238,4.08e-15,47;UBERON:0010314,1.04e-14,92;UBERON:0002616,1.63e-14,46;UBERON:0002020,2.57e-14,34;UBERON:0003080,6.76e-14,40;UBERON:0002780,1.94e-13,39;UBERON:0001890,1.94e-13,39;UBERON:0006240,1.94e-13,39;UBERON:0003528,1.72e-11,29;UBERON:0002791,1.72e-11,29;UBERON:0001893,1.72e-11,29;UBERON:0000956,1.06e-08,21;UBERON:0001869,1.06e-08,21;UBERON:0000203,1.06e-08,21 | |||
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|phase1_expression=3.36312578920067,0,0.909998478779072,0,0.500895729946347,0.33575854382378,0.233612640595526,1.80772652818207,0.703943610758334,0.468129052643987,1.02730780935303,1.35612670292072,2.56801094896809,1.74840804837995,1.66554880907831,1.01237633694913,0,6.30924330716475,4.38766187538364,5.51706547337439,5.78294373027274,0.0992909512008853,0.783599367416806,0.319984845586813,0.68822784320151,0,0.86152399231815,0,0.570070258369122,0,0.221730510655305,0,0,0,0,0.498703936075477,1.22501613757421,2.09265815368454,0,1.57057123192139,2.35292595212406,1.36609096991689,0.971020706062307,0.377690453926732,0.202753862439029,0,2.34717403304412,0.872100625521786,0.219686182734472,0.58328969722285,0.839918529752175,0,2.34895648480831,1.45072428402269,3.02484419228218,0,0.573066879877513,0,13.9598357993122,12.6957835025288,12.0427966666174,0.338844532069132,0,0,0,0,0.299600110518405,0.768436610643109,7.25827286159344,5.67024940993101,4.83747411108179,5.14171771926846,3.75476519617743,9.30930074033651,9.10531974673246,6.43453150627015,4.40463523997555,4.08599481872601,4.76180253094355,15.1669230889723,16.742238779241,10.939180781692,0.558365998002762,3.37657566019008,4.43114918552749,10.0173719061047,12.6710795911202,15.6575534493252,0.302904773332736,0.453429360640713,0.579728977403356,0,0,0,0,0,1.12355536105401,0.170430322578058,0.259786004602869,1.06001872353102,1.97180787687353,1.28326477414318,0,0,0.216491041011214,0,0,1.02765491747154,5.95557132388495,1.92974780784272,0.346970653532272,0.608930956624282,0.691846491768175,0.904335843315735,2.82212897125692,1.0053327306374,3.21353458054686,0.144599356919912,0,0.808834249737046,1.76673214768315,0.969750506270444,0,7.31951992528868,5.86450779077674,0.510914110417183,1.1981512450592,0,0.508280908292259,4.6435098215495,4.57500602818627,15.4554853098823,5.21472960576829,4.09144731728529,4.98691306942944,4.2182728397617,1.62942982160506,1.7416975885413,3.53811861807145,2.73574412652416,0.780722657776222,2.5289231487682,2.16074555766419,3.76762044589288,6.66757691683013,8.32739181851524,6.8402258928602,8.79591460512653,0.646703978798527,2.45837904218165,2.63926686245923,1.09597866213787,0.556094498451196,1.74126083261083,1.23469281844766,1.19420560091096,0,0,0.568326998791185,1.44988040774851,1.64168241986767,1.62055855314913,1.89395788468168,0.787056926989615,2.62254091908543,0.697601834251224,1.60964040839772,4.32031766758527,2.63295759861569,2.95501435342371,3.81023404865522,2.19299981137998,3.29325172936576,2.95254121272818,4.41608891984667,9.57012895127345,0.330418782983798,0,0.639864751605702,1.16118335930219,1.9330119198314,1.4117846723634,2.00140239460383,2.09248188723815,0.474529061544512,1.31759163779209,2.26201687920243,1.1937388322469,1.75467678407208,0,0.864552199498777,0.995706366271836,0.569003702859245,1.14248512609729,0,1.62921062276251,1.16371492300575,3.71719845418688,1.70738650235495,1.32849133181642,2.04098346193787,1.1105744752962,0,0.667380422864376,0.589676985339609,0.449724224769707,0.811440485554012,0.72353147925725,0.25462585178142,0.575392274901621,0.486405680325106,0.274561413188081,4.31304619582064,1.48856379067401,0.624075346229121,0.757736633841335,0.179397413521912,0,2.03228509183265,1.51593129416388,0.162964976442026,1.18821560042632,0.469380496577004,2.1775813467436,0.714130922658041,2.34160377429359,3.62560831444239,2.6575762757853,2.87018583583477,0.81931657357869,1.72684981865896,1.3018415272336,0,0,0.491764273019036,0.275936746304732,1.9266070798535,3.7507739709505,0.491804836130026,0.757412781613119,1.89304931649754,0.780877488593277,1.93881057959519,0.716906393857656,2.00518806674155,1.98153571552183,1.61924280669958,1.46127928955656,1.97643888973262,8.03303291054518,1.84522110770749,0.712262414669021,2.93196526836437,1.64970122972535,0,0.971122544619926,0.604647113929502,1.69744571780308,0.885905678642318,1.53717573971964,1.55056975900933,1.09060118843252,0.712994756769443,1.58018378967908,0,0,4.76615448055303,2.70091641046965,0.388076051348264,3.21505552547388,4.78818630834139,6.0645397984704,5.10101963866575,1.2178597964584,1.87737366450968,1.69465656691056,1.10264199027481,1.81374878235628,2.74489525383039,1.80938774784468,1.19372344003136,1.14898629821543,0.291480836629851,3.8939313422207,0.683483523191411,1.03193433981611,0.370389054739423,0.753473828018764,1.0935538217682,1.14389086603261,2.03974115992626,2.51912614182584,1.79659965945751,0.954670618015114,0.632671987162271,1.01659733563424,1.29606408986162,1.67270636811575,1.52853794622324,0.674321731924103,1.81837602595739,0.523511883968059,1.16653475962614,1.86401793926078,29.8757257502621,1.49516546043979,1.82004339502807,1.36115831840833,0.904118764344118,1.520605129417,2.11243029562357,2.8644964665669,4.71867049915699,16.4277202161684,19.5860404255349,1.89606672376907,0.405450430580328,1.23253148597793,1.16928740680016,1.43221356533985,1.19208812868759,1.80293174279953,1.77227432609493,2.92802704849628,3.81034033274999,2.72230699869469,2.43644701849381,2.11666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| ||
|short_description=p2@Scaper | |||
}} | }} |
Latest revision as of 20:55, 26 September 2015
Short description: | p2@Scaper |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Scaper_5end |
Coexpression cluster: | MCL_coexpression_mm9:376 |
Association with transcript: | -59bp_to_NM_001081341, uc009pso.1, uc009psp.1, uc012gtu.1_5end |
EntrezGene: | Scaper |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.78e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.78e-12 | 23 |
neuron | 1.44e-09 | 33 |
neuronal stem cell | 1.44e-09 | 33 |
neuroblast | 1.44e-09 | 33 |
electrically signaling cell | 1.44e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.49e-19 | 64 |
neural plate | 3.49e-19 | 64 |
presumptive neural plate | 3.49e-19 | 64 |
regional part of nervous system | 9.14e-19 | 54 |
neural tube | 8.99e-18 | 52 |
neural rod | 8.99e-18 | 52 |
future spinal cord | 8.99e-18 | 52 |
neural keel | 8.99e-18 | 52 |
ecto-epithelium | 2.22e-17 | 73 |
central nervous system | 6.82e-17 | 73 |
ectoderm-derived structure | 1.10e-16 | 95 |
ectoderm | 1.10e-16 | 95 |
presumptive ectoderm | 1.10e-16 | 95 |
pre-chordal neural plate | 4.62e-16 | 49 |
nervous system | 1.49e-15 | 75 |
brain | 4.08e-15 | 47 |
future brain | 4.08e-15 | 47 |
structure with developmental contribution from neural crest | 1.04e-14 | 92 |
regional part of brain | 1.63e-14 | 46 |
gray matter | 2.57e-14 | 34 |
anterior neural tube | 6.76e-14 | 40 |
regional part of forebrain | 1.94e-13 | 39 |
forebrain | 1.94e-13 | 39 |
future forebrain | 1.94e-13 | 39 |
brain grey matter | 1.72e-11 | 29 |
regional part of telencephalon | 1.72e-11 | 29 |
telencephalon | 1.72e-11 | 29 |
cerebral cortex | 1.06e-08 | 21 |
cerebral hemisphere | 1.06e-08 | 21 |
pallium | 1.06e-08 | 21 |