FFCP PHASE1:Mm9::chr11:51817722..51817813,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr11:51817722..51817813,+ to FFCP PHASE1:Mm9::chr11:51817722..51817813,+: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=213084 | |EntrezGene=213084 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BLF2,E9QPG3,B1AU43,B1AU42,F2Z3Z6 | |UniProt=Q8BLF2,E9QPG3,B1AU43,B1AU42,F2Z3Z6 | ||
|association_with_transcript=0bp_to_ENSMUST00000063303,ENSMUST00000063321,ENSMUST00000109074,ENSMUST00000109077,ENSMUST00000109078,ENSMUST00000109079,ENSMUST00000109080,ENSMUST00000109081,ENSMUST00000109082,ENSMUST00000120374,ENSMUST00000121591,ENSMUST00000135076,ENSMUST00000143228,NM_001166653,NM_001166654,NM_001166655,NM_001166656,NM_001166657,NM_153785,uc007iuu.2,uc007iuv.2,uc007iuw.2,uc007iux.2,uc007iuy.2,uc007iuz.2,uc011xul.1_5end | |||
|cluster_id=chr11:51817722..51817813,+ | |||
|description=CAGE_peak_1_at_Cdkl3_5end | |||
|id=chr11:51817722..51817813,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.83e-11!23;CL:0000337!3.83e-11!23;CL:0000540!3.69e-08!33;CL:0000047!3.69e-08!33;CL:0000031!3.69e-08!33;CL:0000404!3.69e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.81e-11,23;CL:0000337,3.81e-11,23;CL:0000540,3.67e-08,33;CL:0000047,3.67e-08,33;CL:0000031,3.67e-08,33;CL:0000404,3.67e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.01e-16!94;UBERON:0007811!1.09e-16!86;UBERON:0001049!5.17e-16!52;UBERON:0005068!5.17e-16!52;UBERON:0006241!5.17e-16!52;UBERON:0007135!5.17e-16!52;UBERON:0000033!9.27e-15!63;UBERON:0001017!1.34e-14!73;UBERON:0005743!1.34e-14!73;UBERON:0000955!1.49e-14!50;UBERON:0006238!1.49e-14!50;UBERON:0000073!1.82e-14!75;UBERON:0001016!1.82e-14!75;UBERON:0002616!5.36e-14!49;UBERON:0003056!3.51e-13!49;UBERON:0002346!1.13e-12!71;UBERON:0003075!1.13e-12!71;UBERON:0007284!1.13e-12!71;UBERON:0002020!1.88e-12!34;UBERON:0003080!4.71e-12!40;UBERON:0002780!1.79e-11!39;UBERON:0001890!1.79e-11!39;UBERON:0006240!1.79e-11!39;UBERON:0004121!6.84e-11!102;UBERON:0000924!6.84e-11!102;UBERON:0006601!6.84e-11!102;UBERON:0002791!5.89e-10!29;UBERON:0003528!5.89e-10!29;UBERON:0001893!5.89e-10!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.36e-16,54;UBERON:0002346,4.87e-16,64;UBERON:0003075,4.87e-16,64;UBERON:0007284,4.87e-16,64;UBERON:0001049,5.13e-16,52;UBERON:0005068,5.13e-16,52;UBERON:0006241,5.13e-16,52;UBERON:0007135,5.13e-16,52;UBERON:0010371,8.82e-15,73;UBERON:0001017,1.21e-14,73;UBERON:0001016,1.64e-14,75;UBERON:0000955,1.80e-13,47;UBERON:0006238,1.80e-13,47;UBERON:0004121,2.93e-13,95;UBERON:0000924,2.93e-13,95;UBERON:0006601,2.93e-13,95;UBERON:0003056,3.49e-13,49;UBERON:0002616,6.37e-13,46;UBERON:0002020,1.86e-12,34;UBERON:0003080,4.68e-12,40;UBERON:0002780,1.78e-11,39;UBERON:0001890,1.78e-11,39;UBERON:0006240,1.78e-11,39;UBERON:0003528,5.86e-10,29;UBERON:0002791,5.86e-10,29;UBERON:0001893,5.86e-10,29;UBERON:0010314,1.95e-09,92 | |||
|phase1_expression=7.20669811971573,1.39590163055744,1.36499771816861,1.51232105653415,0.500895729946347,1.6787927191189,1.63528848416868,5.03580961422147,2.53419699873,2.10658073689794,7.53359060192222,6.62108919661292,3.93761678841773,3.67165690159789,1.33243904726265,2.83465374345756,1.39912375625629,6.62470547252299,6.30726394586398,6.79023442876848,109.365671134276,1.98581902401771,1.82839852397255,1.11994695955385,0.91763712426868,0.57423196411502,1.29228598847722,0.646413698057667,0.570070258369122,1.00812051903972,1.33038306393183,3.17515336729816,0.61506478758457,15.8481681015439,0.577703239502549,0.997407872150954,2.24586291888606,7.95210098400125,4.6880120671428,6.80580867165938,14.7057872007754,6.83045484958446,5.82612423637384,3.52511090331616,3.34543873024398,5.13930906052708,6.25913075478431,1.74420125104357,1.09843091367236,3.4997381833371,3.63964696225943,0,5.03347818173209,1.45072428402269,2.01656279485478,1.28629718017973,2.86533439938757,1.54701627683233,10.7227724255587,10.5798195854407,13.9442908771359,2.37191172448392,0,1.7997994345628,0.988866362566974,1.4209602298922,2.09720077362883,2.68952813725088,8.50254820929517,8.50537411489651,7.36137364729837,8.2838785477103,9.718215801871,10.0442455356262,8.05101956553185,7.35375029288017,5.50579404996943,13.0241084846891,12.4421291937557,10.9465618816061,10.0636407962651,8.33461392890816,10.0505879640497,18.5711661310454,10.8486755921535,11.7851434189467,14.5219114415085,16.0303523409758,4.16494063332512,5.7434385681157,4.63783181922684,2.58127163094416,0,1.07940638327563,1.29955283489534,0.448026887097336,13.4826643326482,1.70430322578058,3.63700406444016,3.5333957451034,6.61964072950398,19.2489716121477,48.4129955442627,49.7746692207332,0.865964164044856,0.760079596425296,0.505524445014783,15.300639882354,6.99132285847364,4.00793775475027,2.4287945747259,3.04465478312141,2.30615497256059,2.11011696773672,3.17489509266403,2.13633205260448,1.48316980640624,4.33798070759735,3.5384422077995,5.50007289821191,2.65009822152472,4.363877278217,1.86391761218122,6.44117753425404,9.21565509979202,0.510914110417183,1.1981512450592,2.99951365496704,1.65191295194984,15.1288545798871,13.7250180845588,21.9895116197513,10.7771078519211,9.71718737855256,12.0517065844545,14.9261962022337,5.80484373946803,4.60305791257344,7.32895999457657,5.05060454127538,4.81445638962004,3.90833577536904,6.30217454318722,6.17889753126432,9.25296388458059,9.86475646193343,7.40243624021858,8.79591460512653,2.58681591519411,4.34943984385984,6.51019159406611,6.79506770525482,4.44875598760957,5.57203466435466,5.55611768301447,5.7719937377363,2.1066395619397,1.28673953557358,1.98914449576915,4.97101854085205,4.22146907965973,5.04173772090842,2.60419209143731,5.3126342571799,4.9365476123961,3.95307706075693,4.02410102099429,6.77238985729583,6.91151369636618,4.76085645829376,3.89130285820108,3.36259971078264,1.75640092232841,2.68412837520744,13.8791366052324,18.9344486777883,1.32167513193519,0.793351699990633,4.69234151177515,3.25131340604614,4.38149368495117,3.63030344322017,3.33567065767305,1.33157938278791,0.949058123089023,2.47048432086016,3.2673577144035,3.58121649674071,3.8992817423824,1.79763881730844,1.72910439899755,1.7922714592893,3.22435431620239,4.91268604221834,4.50830942692322,3.66572390121566,4.26695471768777,4.97964321221262,6.89278254654404,3.54264355151045,2.19798218977925,3.57851775373222,0.889357881261447,2.66952169145751,2.35870794135844,2.47348323623339,1.82574109249653,1.92941727801933,1.01850340712568,1.43848068725405,1.29708181420028,2.19649130550465,1.43768206527355,0.744281895337007,1.5601883655728,0.252578877947112,1.07638448113147,0.482443521363367,4.0645701836653,5.11626811780309,4.56301934037672,5.26209765903083,5.39787571063555,5.02518772325447,4.52282917683426,6.24427673144956,11.0344600874334,8.41565820665345,10.8429242687091,3.76885623846197,4.14443956478149,6.07526046042349,4.52373851817817,1.63171705145613,2.95058563811422,2.20749397043786,12.5229460190478,12.0728037189969,0.819674726883377,2.27223834483936,2.83957397474631,3.90438744296638,3.87762115919038,2.62865677747807,4.90157082981267,5.09537755419898,4.45291771842384,3.79932615284705,5.53402889125133,12.5315313404505,5.10984306749767,4.45164009168138,6.18970445543589,6.43383479592888,2.65490276679926,2.91336763385978,4.23252979750651,3.20628635585027,0.885905678642318,4.30409207121498,4.39328098385976,4.72593848320757,4.9909632973861,1.8962205476149,2.10837217149998,3.09406629744561,8.85142974959849,6.48219938512717,4.39819524861365,5.35842587578981,9.22169214939823,5.70780216326626,7.0756078858912,3.95804433848979,2.3467170806371,4.87213762986786,3.96951116498931,2.96795255294664,7.42736362801165,5.85035371803112,4.41677672811605,3.44695889464629,3.20628920292836,11.8672193286726,1.36696704638282,3.92135049130123,4.8150577116125,2.44878994106098,2.1871076435364,2.28778173206523,4.24946074984638,3.07893195112048,3.04039942369732,3.81868247206045,4.4287039101359,5.08298667817122,2.91614420218863,2.29997125615916,2.40198820120795,3.37160865962052,4.21532624199213,2.87931536182433,2.46268449254406,1.24267862617385,669.667211156818,5.08356256549528,4.13646226142744,6.22243802700952,3.87479470433193,3.54807863530634,7.51086327332825,9.24451132392046,9.01790362061113,98.5663212970105,318.849216927457,5.68820017130721,2.8381530140623,4.00572732942826,2.98817892848929,5.01274747868948,5.36439657909415,7.09153152167816,7.08909730437971,8.6831146955407,9.22102360525498,8.16692099608408,6.82205165178267,5.8689223400601,7.83075244616512,2.49403421976732,2.66383144048878,2.78112955489375,2.01461539636894,4.63655025677257,3.37828455812128,5.31139710375069,2.78678892802786,1.00314420807073,12.4245405375755,7.82552902062201,5.72895513439397,7.56154002312225,8.90607275701835,9.82012066606611,10.1253375034771,6.75481804836331,7.70342095273148,5.69536342927002,6.01966615988225,8.37952234142165,7.0000778359195,5.34834777550247,5.8691685535835,7.72142735490059,8.22312892865976,6.59312183164461,7.06022261101994,6.31743029409494,7.35089969681695,7.35642731405697,5.15028291084353,7.17081706934536,7.69635284005218,6.66811167796303,6.95305955669133,7.7163688185482,6.59337441285291,7.50714492685426,2.74295401908332,6.92155644021416,7.62995807831427,8.43009216467505,6.39943786824248,7.78454392603424,8.41468675214754,4.99832451731901,6.51859746460137,6.17256498823512,9.13489639556141,6.69830480153832,4.50154147486658,8.52152626522813,6.94463799532109,8.74337022782811,3.97683734357194,7.95022899978704,7.46024495068489,5.95596831622692,4.17362104116759 | |phase1_expression=7.20669811971573,1.39590163055744,1.36499771816861,1.51232105653415,0.500895729946347,1.6787927191189,1.63528848416868,5.03580961422147,2.53419699873,2.10658073689794,7.53359060192222,6.62108919661292,3.93761678841773,3.67165690159789,1.33243904726265,2.83465374345756,1.39912375625629,6.62470547252299,6.30726394586398,6.79023442876848,109.365671134276,1.98581902401771,1.82839852397255,1.11994695955385,0.91763712426868,0.57423196411502,1.29228598847722,0.646413698057667,0.570070258369122,1.00812051903972,1.33038306393183,3.17515336729816,0.61506478758457,15.8481681015439,0.577703239502549,0.997407872150954,2.24586291888606,7.95210098400125,4.6880120671428,6.80580867165938,14.7057872007754,6.83045484958446,5.82612423637384,3.52511090331616,3.34543873024398,5.13930906052708,6.25913075478431,1.74420125104357,1.09843091367236,3.4997381833371,3.63964696225943,0,5.03347818173209,1.45072428402269,2.01656279485478,1.28629718017973,2.86533439938757,1.54701627683233,10.7227724255587,10.5798195854407,13.9442908771359,2.37191172448392,0,1.7997994345628,0.988866362566974,1.4209602298922,2.09720077362883,2.68952813725088,8.50254820929517,8.50537411489651,7.36137364729837,8.2838785477103,9.718215801871,10.0442455356262,8.05101956553185,7.35375029288017,5.50579404996943,13.0241084846891,12.4421291937557,10.9465618816061,10.0636407962651,8.33461392890816,10.0505879640497,18.5711661310454,10.8486755921535,11.7851434189467,14.5219114415085,16.0303523409758,4.16494063332512,5.7434385681157,4.63783181922684,2.58127163094416,0,1.07940638327563,1.29955283489534,0.448026887097336,13.4826643326482,1.70430322578058,3.63700406444016,3.5333957451034,6.61964072950398,19.2489716121477,48.4129955442627,49.7746692207332,0.865964164044856,0.760079596425296,0.505524445014783,15.300639882354,6.99132285847364,4.00793775475027,2.4287945747259,3.04465478312141,2.30615497256059,2.11011696773672,3.17489509266403,2.13633205260448,1.48316980640624,4.33798070759735,3.5384422077995,5.50007289821191,2.65009822152472,4.363877278217,1.86391761218122,6.44117753425404,9.21565509979202,0.510914110417183,1.1981512450592,2.99951365496704,1.65191295194984,15.1288545798871,13.7250180845588,21.9895116197513,10.7771078519211,9.71718737855256,12.0517065844545,14.9261962022337,5.80484373946803,4.60305791257344,7.32895999457657,5.05060454127538,4.81445638962004,3.90833577536904,6.30217454318722,6.17889753126432,9.25296388458059,9.86475646193343,7.40243624021858,8.79591460512653,2.58681591519411,4.34943984385984,6.51019159406611,6.79506770525482,4.44875598760957,5.57203466435466,5.55611768301447,5.7719937377363,2.1066395619397,1.28673953557358,1.98914449576915,4.97101854085205,4.22146907965973,5.04173772090842,2.60419209143731,5.3126342571799,4.9365476123961,3.95307706075693,4.02410102099429,6.77238985729583,6.91151369636618,4.76085645829376,3.89130285820108,3.36259971078264,1.75640092232841,2.68412837520744,13.8791366052324,18.9344486777883,1.32167513193519,0.793351699990633,4.69234151177515,3.25131340604614,4.38149368495117,3.63030344322017,3.33567065767305,1.33157938278791,0.949058123089023,2.47048432086016,3.2673577144035,3.58121649674071,3.8992817423824,1.79763881730844,1.72910439899755,1.7922714592893,3.22435431620239,4.91268604221834,4.50830942692322,3.66572390121566,4.26695471768777,4.97964321221262,6.89278254654404,3.54264355151045,2.19798218977925,3.57851775373222,0.889357881261447,2.66952169145751,2.35870794135844,2.47348323623339,1.82574109249653,1.92941727801933,1.01850340712568,1.43848068725405,1.29708181420028,2.19649130550465,1.43768206527355,0.744281895337007,1.5601883655728,0.252578877947112,1.07638448113147,0.482443521363367,4.0645701836653,5.11626811780309,4.56301934037672,5.26209765903083,5.39787571063555,5.02518772325447,4.52282917683426,6.24427673144956,11.0344600874334,8.41565820665345,10.8429242687091,3.76885623846197,4.14443956478149,6.07526046042349,4.52373851817817,1.63171705145613,2.95058563811422,2.20749397043786,12.5229460190478,12.0728037189969,0.819674726883377,2.27223834483936,2.83957397474631,3.90438744296638,3.87762115919038,2.62865677747807,4.90157082981267,5.09537755419898,4.45291771842384,3.79932615284705,5.53402889125133,12.5315313404505,5.10984306749767,4.45164009168138,6.18970445543589,6.43383479592888,2.65490276679926,2.91336763385978,4.23252979750651,3.20628635585027,0.885905678642318,4.30409207121498,4.39328098385976,4.72593848320757,4.9909632973861,1.8962205476149,2.10837217149998,3.09406629744561,8.85142974959849,6.48219938512717,4.39819524861365,5.35842587578981,9.22169214939823,5.70780216326626,7.0756078858912,3.95804433848979,2.3467170806371,4.87213762986786,3.96951116498931,2.96795255294664,7.42736362801165,5.85035371803112,4.41677672811605,3.44695889464629,3.20628920292836,11.8672193286726,1.36696704638282,3.92135049130123,4.8150577116125,2.44878994106098,2.1871076435364,2.28778173206523,4.24946074984638,3.07893195112048,3.04039942369732,3.81868247206045,4.4287039101359,5.08298667817122,2.91614420218863,2.29997125615916,2.40198820120795,3.37160865962052,4.21532624199213,2.87931536182433,2.46268449254406,1.24267862617385,669.667211156818,5.08356256549528,4.13646226142744,6.22243802700952,3.87479470433193,3.54807863530634,7.51086327332825,9.24451132392046,9.01790362061113,98.5663212970105,318.849216927457,5.68820017130721,2.8381530140623,4.00572732942826,2.98817892848929,5.01274747868948,5.36439657909415,7.09153152167816,7.08909730437971,8.6831146955407,9.22102360525498,8.16692099608408,6.82205165178267,5.8689223400601,7.83075244616512,2.49403421976732,2.66383144048878,2.78112955489375,2.01461539636894,4.63655025677257,3.37828455812128,5.31139710375069,2.78678892802786,1.00314420807073,12.4245405375755,7.82552902062201,5.72895513439397,7.56154002312225,8.90607275701835,9.82012066606611,10.1253375034771,6.75481804836331,7.70342095273148,5.69536342927002,6.01966615988225,8.37952234142165,7.0000778359195,5.34834777550247,5.8691685535835,7.72142735490059,8.22312892865976,6.59312183164461,7.06022261101994,6.31743029409494,7.35089969681695,7.35642731405697,5.15028291084353,7.17081706934536,7.69635284005218,6.66811167796303,6.95305955669133,7.7163688185482,6.59337441285291,7.50714492685426,2.74295401908332,6.92155644021416,7.62995807831427,8.43009216467505,6.39943786824248,7.78454392603424,8.41468675214754,4.99832451731901,6.51859746460137,6.17256498823512,9.13489639556141,6.69830480153832,4.50154147486658,8.52152626522813,6.94463799532109,8.74337022782811,3.97683734357194,7.95022899978704,7.46024495068489,5.95596831622692,4.17362104116759 | ||
|short_description=p1@Cdkl3 | |||
}} | }} |
Latest revision as of 15:42, 1 October 2015
Short description: | p1@Cdkl3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cdkl3_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000063303, ENSMUST00000063321, ENSMUST00000109074, ENSMUST00000109077, ENSMUST00000109078, ENSMUST00000109079, ENSMUST00000109080, ENSMUST00000109081, ENSMUST00000109082, ENSMUST00000120374, ENSMUST00000121591, ENSMUST00000135076, ENSMUST00000143228, NM_001166653, NM_001166654, NM_001166655, NM_001166656, NM_001166657, NM_153785, uc007iuu.2, uc007iuv.2, uc007iuw.2, uc007iux.2, uc007iuy.2, uc007iuz.2, uc011xul.1_5end |
EntrezGene: | Cdkl3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.81e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.81e-11 | 23 |
neuron | 3.67e-08 | 33 |
neuronal stem cell | 3.67e-08 | 33 |
neuroblast | 3.67e-08 | 33 |
electrically signaling cell | 3.67e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.36e-16 | 54 |
neurectoderm | 4.87e-16 | 64 |
neural plate | 4.87e-16 | 64 |
presumptive neural plate | 4.87e-16 | 64 |
neural tube | 5.13e-16 | 52 |
neural rod | 5.13e-16 | 52 |
future spinal cord | 5.13e-16 | 52 |
neural keel | 5.13e-16 | 52 |
ecto-epithelium | 8.82e-15 | 73 |
central nervous system | 1.21e-14 | 73 |
nervous system | 1.64e-14 | 75 |
brain | 1.80e-13 | 47 |
future brain | 1.80e-13 | 47 |
ectoderm-derived structure | 2.93e-13 | 95 |
ectoderm | 2.93e-13 | 95 |
presumptive ectoderm | 2.93e-13 | 95 |
pre-chordal neural plate | 3.49e-13 | 49 |
regional part of brain | 6.37e-13 | 46 |
gray matter | 1.86e-12 | 34 |
anterior neural tube | 4.68e-12 | 40 |
regional part of forebrain | 1.78e-11 | 39 |
forebrain | 1.78e-11 | 39 |
future forebrain | 1.78e-11 | 39 |
brain grey matter | 5.86e-10 | 29 |
regional part of telencephalon | 5.86e-10 | 29 |
telencephalon | 5.86e-10 | 29 |
structure with developmental contribution from neural crest | 1.95e-09 | 92 |