FFCP PHASE1:Mm9::chrX:140367632..140367685,-: Difference between revisions
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{{FFCP|EntrezGene=13193|HGNC=|MCL_coexpression_id=22|UniProt=O88809,Q6E5A4,Q6PGI2,Q8C852,Q3V349|association_with_transcript=0bp_to_ENSMUST00000087313,ENSMUST00000125768,NM_001110222,uc009umo.2,uc009ump.2,uc009umq.2_5end|description=CAGE_peak_1_at_Dcx_5end|id=chrX:140367632..140367685,-|ontology_enrichment_celltype=CL:0000540!2.39e-12!33;CL:0000047!2.39e-12!33;CL:0000031!2.39e-12!33;CL:0000404!2.39e-12!33;CL:0000117!4.39e-12!23;CL:0000337!4.39e-12!23;CL:0000221!3.98e-08!44;CL:0000133!3.98e-08!44;CL:0002319!4.64e-08!43;CL:0000393!5.20e-08!39;CL:0000211!5.20e-08!39|ontology_enrichment_celltype_v019_2=CL:0000540,2.15e-13,33;CL:0000047,2.15e-13,33;CL:0000031,2.15e-13,33;CL:0000404,2.15e-13,33;CL:0000117,4.20e-13,23;CL:0000337,4.20e-13,23;CL:0000393,2.86e-09,39;CL:0000211,2.86e-09,39;CL:0000221,8.66e-08,44;CL:0000133,8.66e-08,44;CL:0002319,1.03e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.66e-18!71;UBERON:0003075!2.66e-18!71;UBERON:0007284!2.66e-18!71;UBERON:0001017!8.94e-18!73;UBERON:0005743!8.94e-18!73;UBERON:0004121!3.55e-17!102;UBERON:0000924!3.55e-17!102;UBERON:0006601!3.55e-17!102;UBERON:0000073!3.60e-17!75;UBERON:0001016!3.60e-17!75;UBERON:0003056!2.83e-15!49;UBERON:0001049!9.46e-15!52;UBERON:0005068!9.46e-15!52;UBERON:0006241!9.46e-15!52;UBERON:0007135!9.46e-15!52;UBERON:0000033!1.81e-14!63;UBERON:0002020!2.97e-13!34;UBERON:0000955!3.32e-13!50;UBERON:0006238!3.32e-13!50;UBERON:0003080!6.46e-13!40;UBERON:0002780!1.11e-12!39;UBERON:0001890!1.11e-12!39;UBERON:0006240!1.11e-12!39;UBERON:0002616!1.27e-12!49;UBERON:0002791!1.16e-10!29;UBERON:0003528!1.16e-10!29;UBERON:0001893!1.16e-10!29;UBERON:0000468!3.49e-08!333;UBERON:0000956!8.76e-08!21;UBERON:0001869!8.76e-08!21;UBERON:0000203!8.76e-08!21;UBERON:0000153!1.28e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.15e-18,73;UBERON:0002346,1.57e-18,64;UBERON:0003075,1.57e-18,64;UBERON:0007284,1.57e-18,64;UBERON:0001016,1.81e-17,75;UBERON:0003056,1.60e-16,49;UBERON:0000073,2.03e-16,54;UBERON:0004121,4.05e-16,95;UBERON:0000924,4.05e-16,95;UBERON:0006601,4.05e-16,95;UBERON:0001049,6.12e-16,52;UBERON:0005068,6.12e-16,52;UBERON:0006241,6.12e-16,52;UBERON:0007135,6.12e-16,52;UBERON:0010371,8.82e-16,73;UBERON:0002020,1.11e-14,34;UBERON:0003080,2.75e-14,40;UBERON:0002780,4.97e-14,39;UBERON:0001890,4.97e-14,39;UBERON:0006240,4.97e-14,39;UBERON:0000955,1.05e-13,47;UBERON:0006238,1.05e-13,47;UBERON:0002616,4.54e-13,46;UBERON:0003528,8.01e-12,29;UBERON:0002791,8.01e-12,29;UBERON:0001893,8.01e-12,29;UBERON:0010314,2.18e-10,92;UBERON:0000956,1.16e-08,21;UBERON:0001869,1.16e-08,21;UBERON:0000203,1.16e-08,21|phase1_expression=6.08565618998217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.656861476496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0,0,0.279972843250725,0,0,0,0,0,0,0,178.847751399884,243.864841444407,140.076740174866,0,0,0,0.988866362566974,0,0.299600110518405,2.30530983192933,162.481622487384,122.99040982017,122.409127506504,18.852964970651,19.6573001446936,226.73046934688,178.655957977993,121.336879832523,6.60695285996332,7.40586560894089,7.83393319606842,172.111605487903,244.272008418434,223.47183596885,2.51264699101243,6.75315132038016,7.02871939773326,118.146062774941,144.649627691889,267.856003650957,0.227178579999552,0.0755715601067855,6.08715426273523,0,0,0.539703191637817,0,0,0.280888840263504,0,0,0,4.50698943285378,0,0,0,0,0,0,0.34255163915718,0,0.742210695324124,8.32729568477452,14.9188084372949,11.3001593655469,8.59119051149949,14.8161770990988,0.125666591329675,0,0,0,5.66183974815932,0.220841518460394,0,0,2.34224637609238,2.93225389538837,0,0,0,0,10.3355541189328,8.6925114535539,199.036493746777,14.2535942557667,18.1557974704535,7.89594569326328,14.2772311499627,3.97173519016234,0,0,0.210441855886474,8.97831056442656,33.1059030384201,49.517085696471,45.9649694398931,34.5625415688746,35.7437279594731,26.611289774963,3.10444044886819,15.089759505299,16.4522289746003,15.1317966780996,12.2749610159442,11.3999372182495,12.537077994798,5.76189981942242,1.19420560091096,0,0,0,0.621377317606506,2.34526059981096,0.36012412292203,0.473489471170421,0,0.462801338662135,0,0,0.350296027101508,0,0,0,0,0,0,5.67782861123144,236.783513084733,0,0.264450566663544,4.69234151177515,6.50262681209228,7.60318021800351,5.44545516483025,2.66853652613844,2.66315876557583,0,2.47048432086016,1.25667604400135,1.79060824837036,1.9496408711912,0,0,0.199141273254367,6.82804443431094,10.5108631600951,6.76246414038483,5.49858585182348,2.90928730751439,3.85747009396752,0,0,0,0,0,1.33476084572875,1.96558995113203,0,0.405720242777006,0.241177159752417,0.25462585178142,0.863088412352432,0.486405680325106,0,0,2.23284568601102,0.936113019343682,0.505157755894224,0.538192240565737,0,0,9.28507917675375,8.31121379854332,4.41337223015489,2.34690248288502,0.670025029767263,0.952174563544055,0.390267295715598,2.52216230569906,2.6575762757853,1.91345722388985,0,0.172684981865896,0,0,0,0,0,7.70642831941401,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13193 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=O88809,Q6E5A4,Q6PGI2,Q8C852,Q3V349 | |||
|association_with_transcript=0bp_to_ENSMUST00000087313,ENSMUST00000125768,NM_001110222,uc009umo.2,uc009ump.2,uc009umq.2_5end | |||
|cluster_id=chrX:140367632..140367685,- | |||
|description=CAGE_peak_1_at_Dcx_5end | |||
|id=chrX:140367632..140367685,- | |||
|ontology_enrichment_celltype=CL:0000540!2.39e-12!33;CL:0000047!2.39e-12!33;CL:0000031!2.39e-12!33;CL:0000404!2.39e-12!33;CL:0000117!4.39e-12!23;CL:0000337!4.39e-12!23;CL:0000221!3.98e-08!44;CL:0000133!3.98e-08!44;CL:0002319!4.64e-08!43;CL:0000393!5.20e-08!39;CL:0000211!5.20e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.15e-13,33;CL:0000047,2.15e-13,33;CL:0000031,2.15e-13,33;CL:0000404,2.15e-13,33;CL:0000117,4.20e-13,23;CL:0000337,4.20e-13,23;CL:0000393,2.86e-09,39;CL:0000211,2.86e-09,39;CL:0000221,8.66e-08,44;CL:0000133,8.66e-08,44;CL:0002319,1.03e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.66e-18!71;UBERON:0003075!2.66e-18!71;UBERON:0007284!2.66e-18!71;UBERON:0001017!8.94e-18!73;UBERON:0005743!8.94e-18!73;UBERON:0004121!3.55e-17!102;UBERON:0000924!3.55e-17!102;UBERON:0006601!3.55e-17!102;UBERON:0000073!3.60e-17!75;UBERON:0001016!3.60e-17!75;UBERON:0003056!2.83e-15!49;UBERON:0001049!9.46e-15!52;UBERON:0005068!9.46e-15!52;UBERON:0006241!9.46e-15!52;UBERON:0007135!9.46e-15!52;UBERON:0000033!1.81e-14!63;UBERON:0002020!2.97e-13!34;UBERON:0000955!3.32e-13!50;UBERON:0006238!3.32e-13!50;UBERON:0003080!6.46e-13!40;UBERON:0002780!1.11e-12!39;UBERON:0001890!1.11e-12!39;UBERON:0006240!1.11e-12!39;UBERON:0002616!1.27e-12!49;UBERON:0002791!1.16e-10!29;UBERON:0003528!1.16e-10!29;UBERON:0001893!1.16e-10!29;UBERON:0000468!3.49e-08!333;UBERON:0000956!8.76e-08!21;UBERON:0001869!8.76e-08!21;UBERON:0000203!8.76e-08!21;UBERON:0000153!1.28e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.15e-18,73;UBERON:0002346,1.57e-18,64;UBERON:0003075,1.57e-18,64;UBERON:0007284,1.57e-18,64;UBERON:0001016,1.81e-17,75;UBERON:0003056,1.60e-16,49;UBERON:0000073,2.03e-16,54;UBERON:0004121,4.05e-16,95;UBERON:0000924,4.05e-16,95;UBERON:0006601,4.05e-16,95;UBERON:0001049,6.12e-16,52;UBERON:0005068,6.12e-16,52;UBERON:0006241,6.12e-16,52;UBERON:0007135,6.12e-16,52;UBERON:0010371,8.82e-16,73;UBERON:0002020,1.11e-14,34;UBERON:0003080,2.75e-14,40;UBERON:0002780,4.97e-14,39;UBERON:0001890,4.97e-14,39;UBERON:0006240,4.97e-14,39;UBERON:0000955,1.05e-13,47;UBERON:0006238,1.05e-13,47;UBERON:0002616,4.54e-13,46;UBERON:0003528,8.01e-12,29;UBERON:0002791,8.01e-12,29;UBERON:0001893,8.01e-12,29;UBERON:0010314,2.18e-10,92;UBERON:0000956,1.16e-08,21;UBERON:0001869,1.16e-08,21;UBERON:0000203,1.16e-08,21 | |||
|phase1_expression=6.08565618998217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.656861476496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0,0,0.279972843250725,0,0,0,0,0,0,0,178.847751399884,243.864841444407,140.076740174866,0,0,0,0.988866362566974,0,0.299600110518405,2.30530983192933,162.481622487384,122.99040982017,122.409127506504,18.852964970651,19.6573001446936,226.73046934688,178.655957977993,121.336879832523,6.60695285996332,7.40586560894089,7.83393319606842,172.111605487903,244.272008418434,223.47183596885,2.51264699101243,6.75315132038016,7.02871939773326,118.146062774941,144.649627691889,267.856003650957,0.227178579999552,0.0755715601067855,6.08715426273523,0,0,0.539703191637817,0,0,0.280888840263504,0,0,0,4.50698943285378,0,0,0,0,0,0,0.34255163915718,0,0.742210695324124,8.32729568477452,14.9188084372949,11.3001593655469,8.59119051149949,14.8161770990988,0.125666591329675,0,0,0,5.66183974815932,0.220841518460394,0,0,2.34224637609238,2.93225389538837,0,0,0,0,10.3355541189328,8.6925114535539,199.036493746777,14.2535942557667,18.1557974704535,7.89594569326328,14.2772311499627,3.97173519016234,0,0,0.210441855886474,8.97831056442656,33.1059030384201,49.517085696471,45.9649694398931,34.5625415688746,35.7437279594731,26.611289774963,3.10444044886819,15.089759505299,16.4522289746003,15.1317966780996,12.2749610159442,11.3999372182495,12.537077994798,5.76189981942242,1.19420560091096,0,0,0,0.621377317606506,2.34526059981096,0.36012412292203,0.473489471170421,0,0.462801338662135,0,0,0.350296027101508,0,0,0,0,0,0,5.67782861123144,236.783513084733,0,0.264450566663544,4.69234151177515,6.50262681209228,7.60318021800351,5.44545516483025,2.66853652613844,2.66315876557583,0,2.47048432086016,1.25667604400135,1.79060824837036,1.9496408711912,0,0,0.199141273254367,6.82804443431094,10.5108631600951,6.76246414038483,5.49858585182348,2.90928730751439,3.85747009396752,0,0,0,0,0,1.33476084572875,1.96558995113203,0,0.405720242777006,0.241177159752417,0.25462585178142,0.863088412352432,0.486405680325106,0,0,2.23284568601102,0.936113019343682,0.505157755894224,0.538192240565737,0,0,9.28507917675375,8.31121379854332,4.41337223015489,2.34690248288502,0.670025029767263,0.952174563544055,0.390267295715598,2.52216230569906,2.6575762757853,1.91345722388985,0,0.172684981865896,0,0,0,0,0,7.70642831941401,6.68106613575558,0,0.252470927204373,3.15508219416257,4.68526493155966,5.60100834105277,4.06246956519338,6.46116154838943,7.92614286208731,3.64329631507405,8.76767573733936,8.69633111482352,107.321319684884,0,1.42452482933804,1.14020871547503,0,1.32745138339963,7.52619972080442,3.62788268357701,4.52652191414155,4.13422650033082,4.30409207121498,4.9101375701962,9.45187696641514,11.4079161083111,3.47640433729398,1.05418608574999,0,2.04263763452273,14.7650097105674,6.85601024048599,16.0752776273694,22.3448694389265,17.1234064897988,19.4167844310503,6.08929898229199,0,0,0,0,5.9741837877485,1.44751019827574,0.477489376012546,0.164140899745061,0,5.19190845629427,0,1.44470807574256,0.740778109478847,0,0,0,0,0,0,0,7.27572785236611,10.1659733563424,6.37231510848627,5.64538399239065,3.27543845619266,4.04593039154462,2.23164330458407,0,0,0,0,0.598066184175915,0.165458490457098,0.194451188344048,0.387479470433193,0,0.352071715937262,0.13020438484395,0,0,0,0,0.608175645870493,1.1298205288131,0.129920822977795,0.358053391334963,0.198681354781265,0.120195449519969,0,0,0.0762068066549998,0.100826185136841,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,34.4498623996411,36.365693684067,41.821372481076,35.0580491981123,24.6629707117431,37.0143009720953,34.4261475118221,26.1186297870048,24.0165476761628,21.7459330935764,61.3383224222484,84.9922980344196,71.8788480224905,58.3456120963906,77.5568701723535,48.3508427223537,52.8947212167844,53.7751499393514,37.8684667318342,47.0016813880663,54.2445701765113,53.1926282708735,56.9340365416885,54.357354391734,54.8508728526107,54.7737744975535,44.1519281849899,43.790393045261,44.9173631875604,57.2603799322806,51.0875186054269,44.191475733675,57.7015579672517,54.5049062371232,58.8183627595816,50.1764624797642,45.7319932181931,45.5110600787468,53.9142331968071,49.9416621775387,37.7259357634874,38.0227301969675,32.7384834535751,47.8754839264635,35.3019098095489,76.1922262710735,37.1951257428199,41.6849844853699,19.7026982030909,2.42650561031467,0.927471342481686 | |||
|short_description=p1@Dcx | |||
}} |
Latest revision as of 16:09, 1 October 2015
Short description: | p1@Dcx |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dcx_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000087313, ENSMUST00000125768, NM_001110222, uc009umo.2, uc009ump.2, uc009umq.2_5end |
EntrezGene: | Dcx |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.15e-13 | 33 |
neuronal stem cell | 2.15e-13 | 33 |
neuroblast | 2.15e-13 | 33 |
electrically signaling cell | 2.15e-13 | 33 |
CNS neuron (sensu Vertebrata) | 4.20e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.20e-13 | 23 |
electrically responsive cell | 2.86e-09 | 39 |
electrically active cell | 2.86e-09 | 39 |
ectodermal cell | 8.66e-08 | 44 |
neurectodermal cell | 8.66e-08 | 44 |
neural cell | 1.03e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.15e-18 | 73 |
neurectoderm | 1.57e-18 | 64 |
neural plate | 1.57e-18 | 64 |
presumptive neural plate | 1.57e-18 | 64 |
nervous system | 1.81e-17 | 75 |
pre-chordal neural plate | 1.60e-16 | 49 |
regional part of nervous system | 2.03e-16 | 54 |
ectoderm-derived structure | 4.05e-16 | 95 |
ectoderm | 4.05e-16 | 95 |
presumptive ectoderm | 4.05e-16 | 95 |
neural tube | 6.12e-16 | 52 |
neural rod | 6.12e-16 | 52 |
future spinal cord | 6.12e-16 | 52 |
neural keel | 6.12e-16 | 52 |
ecto-epithelium | 8.82e-16 | 73 |
gray matter | 1.11e-14 | 34 |
anterior neural tube | 2.75e-14 | 40 |
regional part of forebrain | 4.97e-14 | 39 |
forebrain | 4.97e-14 | 39 |
future forebrain | 4.97e-14 | 39 |
brain | 1.05e-13 | 47 |
future brain | 1.05e-13 | 47 |
regional part of brain | 4.54e-13 | 46 |
brain grey matter | 8.01e-12 | 29 |
regional part of telencephalon | 8.01e-12 | 29 |
telencephalon | 8.01e-12 | 29 |
structure with developmental contribution from neural crest | 2.18e-10 | 92 |
cerebral cortex | 1.16e-08 | 21 |
cerebral hemisphere | 1.16e-08 | 21 |
pallium | 1.16e-08 | 21 |