FFCP PHASE1:Mm9::chr3:138738080..138738096,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:138738080..138738096,-
|short_description=p3@Rap1gds1
|description=CAGE_peak_3_at_Rap1gds1_5end
|association_with_transcript=66bp_to_ENSMUST00000029796,ENS...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=229877 | |EntrezGene=229877 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q6Q4,E9Q912,Q3TPS9,Q3TA69,Q3TU36,Q8BKH0,Q3TYN8 | |UniProt=E9Q6Q4,E9Q912,Q3TPS9,Q3TA69,Q3TU36,Q8BKH0,Q3TYN8 | ||
|association_with_transcript=66bp_to_ENSMUST00000029796,ENSMUST00000098574,NM_001040690,NM_145544,uc008rnr.1,uc008rns.1,uc008rnt.1,uc008rnu.1,uc008rnv.1,uc008rnw.1,uc008rnx.1_5end | |||
|cluster_id=chr3:138738080..138738096,- | |||
|description=CAGE_peak_3_at_Rap1gds1_5end | |||
|id=chr3:138738080..138738096,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.68e-09!75;UBERON:0001016!1.68e-09!75;UBERON:0001049!2.03e-09!52;UBERON:0005068!2.03e-09!52;UBERON:0006241!2.03e-09!52;UBERON:0007135!2.03e-09!52;UBERON:0000955!7.46e-09!50;UBERON:0006238!7.46e-09!50;UBERON:0001017!8.83e-09!73;UBERON:0005743!8.83e-09!73;UBERON:0002616!2.51e-08!49;UBERON:0002020!7.00e-08!34;UBERON:0002021!9.29e-08!10;UBERON:0000411!9.29e-08!10;UBERON:0001950!9.29e-08!10;UBERON:0002346!1.37e-07!71;UBERON:0003075!1.37e-07!71;UBERON:0007284!1.37e-07!71;UBERON:0004121!3.68e-07!102;UBERON:0000924!3.68e-07!102;UBERON:0006601!3.68e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.29e-10,54;UBERON:0001049,1.54e-09,52;UBERON:0005068,1.54e-09,52;UBERON:0006241,1.54e-09,52;UBERON:0007135,1.54e-09,52;UBERON:0001016,2.44e-09,75;UBERON:0001017,1.33e-08,73;UBERON:0002021,4.61e-08,10;UBERON:0000411,4.61e-08,10;UBERON:0001950,4.61e-08,10;UBERON:0002020,9.03e-08,34;UBERON:0002346,1.15e-07,64;UBERON:0003075,1.15e-07,64;UBERON:0007284,1.15e-07,64;UBERON:0000955,1.86e-07,47;UBERON:0006238,1.86e-07,47;UBERON:0002616,5.99e-07,46;UBERON:0010371,7.37e-07,73;UBERON:0004121,9.04e-07,95;UBERON:0000924,9.04e-07,95;UBERON:0006601,9.04e-07,95 | |||
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| ||
|short_description=p3@Rap1gds1 | |||
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Latest revision as of 17:03, 1 October 2015
Short description: | p3@Rap1gds1 |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rap1gds1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 66bp_to_ENSMUST00000029796, ENSMUST00000098574, NM_001040690, NM_145544, uc008rnr.1, uc008rns.1, uc008rnt.1, uc008rnu.1, uc008rnv.1, uc008rnw.1, uc008rnx.1_5end |
EntrezGene: | Rap1gds1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.29e-10 | 54 |
neural tube | 1.54e-09 | 52 |
neural rod | 1.54e-09 | 52 |
future spinal cord | 1.54e-09 | 52 |
neural keel | 1.54e-09 | 52 |
nervous system | 2.44e-09 | 75 |
central nervous system | 1.33e-08 | 73 |
occipital lobe | 4.61e-08 | 10 |
visual cortex | 4.61e-08 | 10 |
neocortex | 4.61e-08 | 10 |
gray matter | 9.03e-08 | 34 |
neurectoderm | 1.15e-07 | 64 |
neural plate | 1.15e-07 | 64 |
presumptive neural plate | 1.15e-07 | 64 |
brain | 1.86e-07 | 47 |
future brain | 1.86e-07 | 47 |
regional part of brain | 5.99e-07 | 46 |
ecto-epithelium | 7.37e-07 | 73 |
ectoderm-derived structure | 9.04e-07 | 95 |
ectoderm | 9.04e-07 | 95 |
presumptive ectoderm | 9.04e-07 | 95 |