FFCP PHASE1:Mm9::chrX:58146612..58146615,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20675 | |EntrezGene=20675 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=A2AM37,Q5RKW0 | |UniProt=A2AM37,Q5RKW0 | ||
|association_with_transcript=-7bp_to_ENSMUST00000135107,NM_009237,uc009vff.1_5end | |association_with_transcript=-7bp_to_ENSMUST00000135107,NM_009237,uc009vff.1_5end | ||
|cluster_id=chrX:58146612..58146615,- | |||
|description=CAGE_peak_1_at_Sox3_5end | |description=CAGE_peak_1_at_Sox3_5end | ||
|id=chrX:58146612..58146615,- | |id=chrX:58146612..58146615,- | ||
|ontology_enrichment_celltype=CL:0000540!4.93e-17!33;CL:0000047!4.93e-17!33;CL:0000031!4.93e-17!33;CL:0000404!4.93e-17!33;CL:0000221!6.59e-17!44;CL:0000133!6.59e-17!44;CL:0002319!1.78e-16!43;CL:0000393!5.45e-12!39;CL:0000211!5.45e-12!39;CL:0000117!7.77e-12!23;CL:0000337!7.77e-12!23;CL:0000055!1.17e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.23e-19,33;CL:0000047,1.23e-19,33;CL:0000031,1.23e-19,33;CL:0000404,1.23e-19,33;CL:0000221,2.19e-18,44;CL:0000133,2.19e-18,44;CL:0002319,7.50e-18,43;CL:0000393,8.45e-15,39;CL:0000211,8.45e-15,39;CL:0000117,5.46e-14,23;CL:0000337,5.46e-14,23;CL:0000107,8.61e-08,9;CL:0002609,3.49e-07,6;CL:0002321,5.20e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.53e-23!73;UBERON:0005743!1.53e-23!73;UBERON:0000073!9.36e-23!75;UBERON:0001016!9.36e-23!75;UBERON:0004121!2.98e-19!102;UBERON:0000924!2.98e-19!102;UBERON:0006601!2.98e-19!102;UBERON:0002346!5.03e-16!71;UBERON:0003075!5.03e-16!71;UBERON:0007284!5.03e-16!71;UBERON:0001049!9.86e-14!52;UBERON:0005068!9.86e-14!52;UBERON:0006241!9.86e-14!52;UBERON:0007135!9.86e-14!52;UBERON:0003056!2.03e-13!49;UBERON:0000033!2.51e-13!63;UBERON:0000955!2.03e-11!50;UBERON:0006238!2.03e-11!50;UBERON:0002616!2.47e-11!49;UBERON:0003080!6.17e-11!40;UBERON:0002780!1.28e-10!39;UBERON:0001890!1.28e-10!39;UBERON:0006240!1.28e-10!39;UBERON:0002020!1.59e-08!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.63e-21,73;UBERON:0001016,8.90e-20,75;UBERON:0004121,1.79e-19,95;UBERON:0000924,1.79e-19,95;UBERON:0006601,1.79e-19,95;UBERON:0002346,4.83e-17,64;UBERON:0003075,4.83e-17,64;UBERON:0007284,4.83e-17,64;UBERON:0010371,7.42e-14,73;UBERON:0003056,3.17e-12,49;UBERON:0010314,4.56e-12,92;UBERON:0000073,1.36e-11,54;UBERON:0001049,1.72e-11,52;UBERON:0005068,1.72e-11,52;UBERON:0006241,1.72e-11,52;UBERON:0007135,1.72e-11,52;UBERON:0003080,5.72e-09,40;UBERON:0002616,9.26e-09,46;UBERON:0002780,1.32e-08,39;UBERON:0001890,1.32e-08,39;UBERON:0006240,1.32e-08,39;UBERON:0000955,2.24e-08,47;UBERON:0006238,2.24e-08,47;UBERON:0002410,8.61e-08,9;UBERON:0002020,9.76e-07,34 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78590909317247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.84890562969608,0,0.194429899074283,0.699932108126813,15.8127820801469,0,0,0,0,0,0,29.1335703637821,28.0365219014177,26.6209189472595,1.35537812827653,0.889294796111139,0,0,0,21.2716078468067,44.9535417226219,59.8289063019916,43.7419240194678,50.0573408016289,11.9973413449598,6.84692476950002,26.0905402327852,28.1785684793615,26.6573448116906,0,2.55374676170375,1.84327839907492,18.4640802822271,15.186948838,21.8783615633839,1.3959149950069,0.56276261003168,1.5279824777681,9.1334861496837,7.54569908235246,6.71038004971082,0,0.302286240427142,0,0,0,0,0,0,0.280888840263504,0,0,0,4.3661460130771,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0.691846491768175,0.60289056221049,0.587943535678524,0,0.247194967734374,0,0,0,0,0,0,0.292780797011547,1.04723353406728,0,0,0,0,1.9472783122627,0.915001205637253,8.79580464790051,0.521472960576829,0.511430914660661,1.45451631191692,3.89379031362618,0.203678727700633,0,0,0,18.3469824577412,13.7941262660084,8.28285797104606,7.08312643827861,14.4237378200815,16.3985561964608,16.1166966242734,0,0,0,0,0.219195732427575,0,0,0.205782136407943,0.59710280045548,0,0,0,9.52778553663309,14.0715635988658,8.4629168886677,6.8655973319711,2.36117078096885,1.69693824176116,0.697601834251224,0,0,0,0,0,0,0,0,1.26173969138476,15.6415010816512,0,0,0,0.928946687441754,0,0.201683524623343,0.444756087689741,0.190225626112559,0,0.164698954724011,1.00534083520108,0.198956472041151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500535317148282,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0.339490171550376,0,0,0.476087281772027,0,0.157635144106191,0,0,0.163863314715738,0,0,0,0,0,0,0.642202359951168,1.99259867206745,0,0,11.6738041184015,15.2271110275689,30.5901224780574,13.3822526853429,11.5855310522845,11.3230612315533,12.9539424535966,7.89090816360542,10.6727700045561,0.642642632843614,16.3231097989509,2.31485284767432,1.46598263418218,17.8167732810338,0,0.242780636154981,0.302323556964751,0,0,0.307435147943927,0,0,0,0,0,0,0.340439605753788,46.455762260078,67.5252329345979,27.2208034490122,8.86701168211368,8.38333442729732,7.73380396829969,9.43841342255258,0.938686832254841,2.96564899209348,0.220528398054962,0,0,0.120625849856312,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0,0.324016022465404,0,0.218362563746178,0.269728692769641,0.495920734352016,0,0,0,6.20062232552609,0.747582730219894,2.48187735685646,1.16670713006429,0.516639293910924,0.506868376472335,1.17357238645754,23.8274024264429,48.969313846807,10.8712854371703,4.89651010638371,0.316011120628178,0.405450430580328,0.205421914329655,0.129920822977795,0.179026695667481,0,0,0,0,0,0,0,0,0,0,3.99574716073316,10.7656627931371,2.68615386182526,0,1.12609485270709,0.36630324853453,0,0,0.564751842617067,0.920650473014354,1.14579102687879,1.3748254587495,0,0.755393897389701,0,0,0.453142408984205,1.03552062350364,43.9020480281067,23.9414924040619,14.3416228833473,3.8897074730927,7.75568701723535,1.83843508450014,1.33348036680969,1.03017528619447,1.92551525755089,2.52697211763797,1.52087579934144,2.07488975524684,1.31098110457835,1.53660365771686,1.83793500657962,1.90517476513229,1.73826488917283,1.54327376370964,2.06042950401653,1.76638704161277,1.02860775715625,1.77475806159337,0.953744759789284,1.30811774969096,1.31753132581463,1.4384483341585,2.37806364734604,1.57841826862706,1.35804113845862,1.12228454331548,1.89816028998679,1.0835493061312,2.86461730218783,0.619747364743864,2.12197272079256,7.49431733813838,0.701794825336225,1.71896843238639,0.57386499620653,0.661774257358546,0 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| ||
|short_description=p1@Sox3 | |short_description=p1@Sox3 | ||
}} | }} |
Latest revision as of 22:36, 1 October 2015
Short description: | p1@Sox3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sox3_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_ENSMUST00000135107, NM_009237, uc009vff.1_5end |
EntrezGene: | Sox3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.23e-19 | 33 |
neuronal stem cell | 1.23e-19 | 33 |
neuroblast | 1.23e-19 | 33 |
electrically signaling cell | 1.23e-19 | 33 |
ectodermal cell | 2.19e-18 | 44 |
neurectodermal cell | 2.19e-18 | 44 |
neural cell | 7.50e-18 | 43 |
electrically responsive cell | 8.45e-15 | 39 |
electrically active cell | 8.45e-15 | 39 |
CNS neuron (sensu Vertebrata) | 5.46e-14 | 23 |
neuroblast (sensu Vertebrata) | 5.46e-14 | 23 |
autonomic neuron | 8.61e-08 | 9 |
neuron of cerebral cortex | 3.49e-07 | 6 |
embryonic cell | 5.20e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.63e-21 | 73 |
nervous system | 8.90e-20 | 75 |
ectoderm-derived structure | 1.79e-19 | 95 |
ectoderm | 1.79e-19 | 95 |
presumptive ectoderm | 1.79e-19 | 95 |
neurectoderm | 4.83e-17 | 64 |
neural plate | 4.83e-17 | 64 |
presumptive neural plate | 4.83e-17 | 64 |
ecto-epithelium | 7.42e-14 | 73 |
pre-chordal neural plate | 3.17e-12 | 49 |
structure with developmental contribution from neural crest | 4.56e-12 | 92 |
regional part of nervous system | 1.36e-11 | 54 |
neural tube | 1.72e-11 | 52 |
neural rod | 1.72e-11 | 52 |
future spinal cord | 1.72e-11 | 52 |
neural keel | 1.72e-11 | 52 |
anterior neural tube | 5.72e-09 | 40 |
regional part of brain | 9.26e-09 | 46 |
regional part of forebrain | 1.32e-08 | 39 |
forebrain | 1.32e-08 | 39 |
future forebrain | 1.32e-08 | 39 |
brain | 2.24e-08 | 47 |
future brain | 2.24e-08 | 47 |
autonomic nervous system | 8.61e-08 | 9 |
gray matter | 9.76e-07 | 34 |