FFCP PHASE1:Mm9::chr5:134575637..134575667,+: Difference between revisions
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{{FFCP|EntrezGene=80909|HGNC=|UniProt=Q8CAB8|association_with_transcript=19bp_to_NM_030719,uc008zva.1_5end|description=CAGE_peak_2_at_Gatsl2_5end|id=chr5:134575637..134575667,+|ontology_enrichment_celltype=CL:0000117!1.99e-08!23;CL:0000337!1.99e-08!23;CL:0002319!8.09e-08!43;CL:0000221!1.59e-07!44;CL:0000133!1.59e-07!44;CL:0000540!2.28e-07!33;CL:0000047!2.28e-07!33;CL:0000031!2.28e-07!33;CL:0000404!2.28e-07!33;CL:0000055!7.26e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.53e-08,23;CL:0000337,1.53e-08,23;CL:0002319,8.27e-08,43;CL:0000221,1.63e-07,44;CL:0000133,1.63e-07,44;CL:0000540,1.82e-07,33;CL:0000047,1.82e-07,33;CL:0000031,1.82e-07,33;CL:0000404,1.82e-07,33;CL:0000393,9.13e-07,39;CL:0000211,9.13e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.92e-17!73;UBERON:0005743!9.92e-17!73;UBERON:0000073!7.91e-16!75;UBERON:0001016!7.91e-16!75;UBERON:0000955!1.22e-14!50;UBERON:0006238!1.22e-14!50;UBERON:0002616!5.28e-14!49;UBERON:0000033!1.42e-13!63;UBERON:0001049!1.84e-13!52;UBERON:0005068!1.84e-13!52;UBERON:0006241!1.84e-13!52;UBERON:0007135!1.84e-13!52;UBERON:0004121!1.51e-12!102;UBERON:0000924!1.51e-12!102;UBERON:0006601!1.51e-12!102;UBERON:0003080!2.65e-11!40;UBERON:0002020!2.89e-11!34;UBERON:0002346!3.55e-11!71;UBERON:0003075!3.55e-11!71;UBERON:0007284!3.55e-11!71;UBERON:0003056!6.91e-11!49;UBERON:0002780!7.15e-11!39;UBERON:0001890!7.15e-11!39;UBERON:0006240!7.15e-11!39;UBERON:0002791!9.52e-11!29;UBERON:0003528!9.52e-11!29;UBERON:0001893!9.52e-11!29;UBERON:0000956!2.88e-08!21;UBERON:0001869!2.88e-08!21;UBERON:0000203!2.88e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.52e-17,73;UBERON:0001016,6.25e-16,75;UBERON:0000073,6.27e-15,54;UBERON:0004121,2.43e-14,95;UBERON:0000924,2.43e-14,95;UBERON:0006601,2.43e-14,95;UBERON:0001049,1.16e-13,52;UBERON:0005068,1.16e-13,52;UBERON:0006241,1.16e-13,52;UBERON:0007135,1.16e-13,52;UBERON:0000955,2.29e-13,47;UBERON:0006238,2.29e-13,47;UBERON:0002346,2.62e-13,64;UBERON:0003075,2.62e-13,64;UBERON:0007284,2.62e-13,64;UBERON:0002616,9.72e-13,46;UBERON:0003080,1.82e-11,40;UBERON:0002020,1.98e-11,34;UBERON:0010371,3.94e-11,73;UBERON:0003056,4.82e-11,49;UBERON:0002780,4.99e-11,39;UBERON:0001890,4.99e-11,39;UBERON:0006240,4.99e-11,39;UBERON:0003528,6.68e-11,29;UBERON:0002791,6.68e-11,29;UBERON:0001893,6.68e-11,29;UBERON:0010314,1.62e-08,92;UBERON:0000956,2.23e-08,21;UBERON:0001869,2.23e-08,21;UBERON:0000203,2.23e-08,21;UBERON:0002619,9.36e-07,17|phase1_expression=3.84357233051505,4.18770489167233,5.45999087267443,6.95667686005709,12.5223932486587,1.00727563147134,1.16806320297763,0.645616617207881,0,0,0,0,0.513602189793617,0.699363219351979,0,0.202475267389826,0,0.315462165358238,0.411343300817216,0,2.63634199468316,0.893618560807968,0,2.55987876469451,0.91763712426868,5.16808767703518,4.73838195774982,2.37018355954478,4.3705386474966,3.02436155711917,1.55211357458713,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0.683045484958446,0,2.26614272356039,2.63580021170738,5.50640256485045,6.25913075478431,8.93903141159831,6.81027166476863,3.69416808241138,1.95980990275508,4.31257693094915,0.838913030288682,0,3.02484419228218,1.80081605225163,2.29226751951005,4.64104883049698,9.71119012126069,8.99284664762456,8.87363964908651,0.338844532069132,0,2.6996991518442,3.9554654502679,6.3943210345149,9.58720353658895,15.3687322128622,9.7468235569969,13.095576018174,8.83364837675805,5.71301968807607,4.41737081903227,8.69684674426174,6.99671938433125,10.1114066527102,9.91042928994498,10.0872997087298,13.6709814598057,8.30883612700221,6.95306091378313,7.8137005583514,10.3297709630511,11.2552522006336,11.4598685832608,7.36571463684169,4.9830088279686,6.71038004971082,0.757261933331841,1.96486056277642,0.579728977403356,0.860423876981386,0,0,0,0,4.0728881838208,0.681721290312231,1.55871602761721,1.7666978725517,1.69012103732017,0,2.54805239706646,0,1.73192832808971,1.77351905832569,2.52762222507392,2.51204535381932,1.29468941823586,2.07818994690755,1.38788261412909,2.43572382649713,1.61430848079241,1.95939432718409,3.41007250693544,0.879666139307728,11.8653584512499,1.73519228303894,4.42305275974937,26.2062296914803,7.28777010919299,4.84875253135222,0,3.80615036115011,5.23616767033638,5.10914110417183,1.07833612055328,0.599902730993408,0.381210681219194,10.3355541189328,8.6925114535539,5.02617408451458,9.03886464999838,7.16003280524926,10.1816141834184,6.16516799657479,1.73126918545538,3.35898820647251,1.0108910337347,2.31486041475121,2.21204753036596,1.37941262660084,4.86167750474443,3.61691562805716,7.14383241088942,7.30248205623644,6.09061209638237,4.13925393182425,4.74249584452253,5.10586416453112,3.87092473160687,2.84954452155847,2.22437799380478,4.52727816478817,3.70407845534298,1.19420560091096,0,0.51469581422943,0,1.24275463521301,2.81431271977315,1.62055855314913,1.18372367792605,1.18058539048442,0.771335564436891,2.09280550275367,0.804820204198858,2.6856028744449,1.6455984991348,2.95501435342371,3.56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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=80909 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q8CAB8 | |||
|association_with_transcript=19bp_to_NM_030719,uc008zva.1_5end | |||
|cluster_id=chr5:134575637..134575667,+ | |||
|description=CAGE_peak_2_at_Gatsl2_5end | |||
|id=chr5:134575637..134575667,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.99e-08!23;CL:0000337!1.99e-08!23;CL:0002319!8.09e-08!43;CL:0000221!1.59e-07!44;CL:0000133!1.59e-07!44;CL:0000540!2.28e-07!33;CL:0000047!2.28e-07!33;CL:0000031!2.28e-07!33;CL:0000404!2.28e-07!33;CL:0000055!7.26e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.53e-08,23;CL:0000337,1.53e-08,23;CL:0002319,8.27e-08,43;CL:0000221,1.63e-07,44;CL:0000133,1.63e-07,44;CL:0000540,1.82e-07,33;CL:0000047,1.82e-07,33;CL:0000031,1.82e-07,33;CL:0000404,1.82e-07,33;CL:0000393,9.13e-07,39;CL:0000211,9.13e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.92e-17!73;UBERON:0005743!9.92e-17!73;UBERON:0000073!7.91e-16!75;UBERON:0001016!7.91e-16!75;UBERON:0000955!1.22e-14!50;UBERON:0006238!1.22e-14!50;UBERON:0002616!5.28e-14!49;UBERON:0000033!1.42e-13!63;UBERON:0001049!1.84e-13!52;UBERON:0005068!1.84e-13!52;UBERON:0006241!1.84e-13!52;UBERON:0007135!1.84e-13!52;UBERON:0004121!1.51e-12!102;UBERON:0000924!1.51e-12!102;UBERON:0006601!1.51e-12!102;UBERON:0003080!2.65e-11!40;UBERON:0002020!2.89e-11!34;UBERON:0002346!3.55e-11!71;UBERON:0003075!3.55e-11!71;UBERON:0007284!3.55e-11!71;UBERON:0003056!6.91e-11!49;UBERON:0002780!7.15e-11!39;UBERON:0001890!7.15e-11!39;UBERON:0006240!7.15e-11!39;UBERON:0002791!9.52e-11!29;UBERON:0003528!9.52e-11!29;UBERON:0001893!9.52e-11!29;UBERON:0000956!2.88e-08!21;UBERON:0001869!2.88e-08!21;UBERON:0000203!2.88e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.52e-17,73;UBERON:0001016,6.25e-16,75;UBERON:0000073,6.27e-15,54;UBERON:0004121,2.43e-14,95;UBERON:0000924,2.43e-14,95;UBERON:0006601,2.43e-14,95;UBERON:0001049,1.16e-13,52;UBERON:0005068,1.16e-13,52;UBERON:0006241,1.16e-13,52;UBERON:0007135,1.16e-13,52;UBERON:0000955,2.29e-13,47;UBERON:0006238,2.29e-13,47;UBERON:0002346,2.62e-13,64;UBERON:0003075,2.62e-13,64;UBERON:0007284,2.62e-13,64;UBERON:0002616,9.72e-13,46;UBERON:0003080,1.82e-11,40;UBERON:0002020,1.98e-11,34;UBERON:0010371,3.94e-11,73;UBERON:0003056,4.82e-11,49;UBERON:0002780,4.99e-11,39;UBERON:0001890,4.99e-11,39;UBERON:0006240,4.99e-11,39;UBERON:0003528,6.68e-11,29;UBERON:0002791,6.68e-11,29;UBERON:0001893,6.68e-11,29;UBERON:0010314,1.62e-08,92;UBERON:0000956,2.23e-08,21;UBERON:0001869,2.23e-08,21;UBERON:0000203,2.23e-08,21;UBERON:0002619,9.36e-07,17 | |||
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| |||
|short_description=p2@Gatsl2 | |||
}} |
Latest revision as of 23:30, 1 October 2015
Short description: | p2@Gatsl2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gatsl2_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_NM_030719, uc008zva.1_5end |
EntrezGene: | Gatsl2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.53e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.53e-08 | 23 |
neural cell | 8.27e-08 | 43 |
ectodermal cell | 1.63e-07 | 44 |
neurectodermal cell | 1.63e-07 | 44 |
neuron | 1.82e-07 | 33 |
neuronal stem cell | 1.82e-07 | 33 |
neuroblast | 1.82e-07 | 33 |
electrically signaling cell | 1.82e-07 | 33 |
electrically responsive cell | 9.13e-07 | 39 |
electrically active cell | 9.13e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.52e-17 | 73 |
nervous system | 6.25e-16 | 75 |
regional part of nervous system | 6.27e-15 | 54 |
ectoderm-derived structure | 2.43e-14 | 95 |
ectoderm | 2.43e-14 | 95 |
presumptive ectoderm | 2.43e-14 | 95 |
neural tube | 1.16e-13 | 52 |
neural rod | 1.16e-13 | 52 |
future spinal cord | 1.16e-13 | 52 |
neural keel | 1.16e-13 | 52 |
brain | 2.29e-13 | 47 |
future brain | 2.29e-13 | 47 |
neurectoderm | 2.62e-13 | 64 |
neural plate | 2.62e-13 | 64 |
presumptive neural plate | 2.62e-13 | 64 |
regional part of brain | 9.72e-13 | 46 |
anterior neural tube | 1.82e-11 | 40 |
gray matter | 1.98e-11 | 34 |
ecto-epithelium | 3.94e-11 | 73 |
pre-chordal neural plate | 4.82e-11 | 49 |
regional part of forebrain | 4.99e-11 | 39 |
forebrain | 4.99e-11 | 39 |
future forebrain | 4.99e-11 | 39 |
brain grey matter | 6.68e-11 | 29 |
regional part of telencephalon | 6.68e-11 | 29 |
telencephalon | 6.68e-11 | 29 |
structure with developmental contribution from neural crest | 1.62e-08 | 92 |
cerebral cortex | 2.23e-08 | 21 |
cerebral hemisphere | 2.23e-08 | 21 |
pallium | 2.23e-08 | 21 |
regional part of cerebral cortex | 9.36e-07 | 17 |