FFCP PHASE1:Mm9::chr5:135554094..135554130,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=194309 | |EntrezGene=194309 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=720 | |||
|TSSclassifier=NA | |||
|UniProt=Q810I0 | |UniProt=Q810I0 | ||
|association_with_transcript=5bp_to_ENSMUST00000067935,ENSMUST00000076203,NM_001199677,NM_177574,uc008zxq.2,uc008zxr.2_5end | |association_with_transcript=5bp_to_ENSMUST00000067935,ENSMUST00000076203,NM_001199677,NM_177574,uc008zxq.2,uc008zxr.2_5end | ||
|cluster_id=chr5:135554094..135554130,- | |||
|description=CAGE_peak_1_at_Vps37d_5end | |description=CAGE_peak_1_at_Vps37d_5end | ||
|id=chr5:135554094..135554130,- | |id=chr5:135554094..135554130,- | ||
|ontology_enrichment_celltype=CL:0000540!1.52e-16!33;CL:0000047!1.52e-16!33;CL:0000031!1.52e-16!33;CL:0000404!1.52e-16!33;CL:0000221!1.23e-15!44;CL:0000133!1.23e-15!44;CL:0002319!2.19e-15!43;CL:0000393!1.13e-14!39;CL:0000211!1.13e-14!39;CL:0000117!2.01e-14!23;CL:0000337!2.01e-14!23;CL:0000055!3.27e-13!50;CL:0002321!8.58e-10!70;CL:0000220!8.58e-10!70 | |ontology_enrichment_celltype=CL:0000540!1.52e-16!33;CL:0000047!1.52e-16!33;CL:0000031!1.52e-16!33;CL:0000404!1.52e-16!33;CL:0000221!1.23e-15!44;CL:0000133!1.23e-15!44;CL:0002319!2.19e-15!43;CL:0000393!1.13e-14!39;CL:0000211!1.13e-14!39;CL:0000117!2.01e-14!23;CL:0000337!2.01e-14!23;CL:0000055!3.27e-13!50;CL:0002321!8.58e-10!70;CL:0000220!8.58e-10!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.68e-18,33;CL:0000047,2.68e-18,33;CL:0000031,2.68e-18,33;CL:0000404,2.68e-18,33;CL:0000221,4.40e-17,44;CL:0000133,4.40e-17,44;CL:0002319,8.37e-17,43;CL:0000393,1.62e-16,39;CL:0000211,1.62e-16,39;CL:0000117,6.29e-16,23;CL:0000337,6.29e-16,23;CL:0002321,1.22e-09,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.35e-28!73;UBERON:0005743!1.35e-28!73;UBERON:0000073!4.62e-27!75;UBERON:0001016!4.62e-27!75;UBERON:0004121!8.94e-24!102;UBERON:0000924!8.94e-24!102;UBERON:0006601!8.94e-24!102;UBERON:0002346!7.73e-23!71;UBERON:0003075!7.73e-23!71;UBERON:0007284!7.73e-23!71;UBERON:0001049!3.44e-21!52;UBERON:0005068!3.44e-21!52;UBERON:0006241!3.44e-21!52;UBERON:0007135!3.44e-21!52;UBERON:0000033!2.30e-20!63;UBERON:0000955!2.22e-19!50;UBERON:0006238!2.22e-19!50;UBERON:0002616!3.04e-19!49;UBERON:0003056!5.97e-18!49;UBERON:0003080!2.34e-16!40;UBERON:0002780!3.99e-16!39;UBERON:0001890!3.99e-16!39;UBERON:0006240!3.99e-16!39;UBERON:0002020!1.41e-15!34;UBERON:0002791!1.32e-12!29;UBERON:0003528!1.32e-12!29;UBERON:0001893!1.32e-12!29;UBERON:0000153!7.44e-11!94;UBERON:0000468!2.38e-10!333;UBERON:0007811!4.91e-10!86;UBERON:0000956!1.10e-09!21;UBERON:0001869!1.10e-09!21;UBERON:0000203!1.10e-09!21;UBERON:0000922!1.04e-08!328;UBERON:0002619!1.74e-07!17 | |ontology_enrichment_uberon=UBERON:0001017!1.35e-28!73;UBERON:0005743!1.35e-28!73;UBERON:0000073!4.62e-27!75;UBERON:0001016!4.62e-27!75;UBERON:0004121!8.94e-24!102;UBERON:0000924!8.94e-24!102;UBERON:0006601!8.94e-24!102;UBERON:0002346!7.73e-23!71;UBERON:0003075!7.73e-23!71;UBERON:0007284!7.73e-23!71;UBERON:0001049!3.44e-21!52;UBERON:0005068!3.44e-21!52;UBERON:0006241!3.44e-21!52;UBERON:0007135!3.44e-21!52;UBERON:0000033!2.30e-20!63;UBERON:0000955!2.22e-19!50;UBERON:0006238!2.22e-19!50;UBERON:0002616!3.04e-19!49;UBERON:0003056!5.97e-18!49;UBERON:0003080!2.34e-16!40;UBERON:0002780!3.99e-16!39;UBERON:0001890!3.99e-16!39;UBERON:0006240!3.99e-16!39;UBERON:0002020!1.41e-15!34;UBERON:0002791!1.32e-12!29;UBERON:0003528!1.32e-12!29;UBERON:0001893!1.32e-12!29;UBERON:0000153!7.44e-11!94;UBERON:0000468!2.38e-10!333;UBERON:0007811!4.91e-10!86;UBERON:0000956!1.10e-09!21;UBERON:0001869!1.10e-09!21;UBERON:0000203!1.10e-09!21;UBERON:0000922!1.04e-08!328;UBERON:0002619!1.74e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.76e-31,73;UBERON:0001016,1.14e-29,75;UBERON:0004121,4.87e-26,95;UBERON:0000924,4.87e-26,95;UBERON:0006601,4.87e-26,95;UBERON:0002346,1.36e-25,64;UBERON:0003075,1.36e-25,64;UBERON:0007284,1.36e-25,64;UBERON:0000073,3.06e-24,54;UBERON:0001049,7.06e-23,52;UBERON:0005068,7.06e-23,52;UBERON:0006241,7.06e-23,52;UBERON:0007135,7.06e-23,52;UBERON:0010371,1.51e-22,73;UBERON:0000955,2.69e-19,47;UBERON:0006238,2.69e-19,47;UBERON:0003056,2.92e-19,49;UBERON:0002616,3.80e-19,46;UBERON:0003080,6.43e-18,40;UBERON:0002780,1.17e-17,39;UBERON:0001890,1.17e-17,39;UBERON:0006240,1.17e-17,39;UBERON:0002020,4.90e-17,34;UBERON:0010314,1.49e-15,92;UBERON:0003528,1.00e-13,29;UBERON:0002791,1.00e-13,29;UBERON:0001893,1.00e-13,29;UBERON:0000956,1.23e-10,21;UBERON:0001869,1.23e-10,21;UBERON:0000203,1.23e-10,21;UBERON:0002619,3.51e-08,17;UBERON:0000922,2.72e-07,320 | |||
|phase1_expression=3.84357233051505,0.697950815278722,0.909998478779072,0.60492842261366,0.500895729946347,1.17515490338323,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0.47997726838022,0.45881856213434,0,0,0,0.570070258369122,1.00812051903972,0.221730510655305,0,0,0,0.866554859253824,0.997407872150954,1.02084678131185,0,0,0,0,0,0,1.1330713617802,1.4192770370732,1.46837401729345,0.782391344348039,2.39827672018491,2.41654801007919,2.13872888981712,2.93971485413261,0,0,0,0,0,1.43266719969378,1.54701627683233,8.49729135610311,7.93486468908049,12.6766280701236,1.35537812827653,0.889294796111139,0,0.988866362566974,0,2.39680088414724,5.76327457982332,6.42875596312561,7.02030879324791,6.09942387919008,6.85562362569129,5.30084498283872,4.5321595709533,6.3258010872036,10.1114066527102,2.20231761998777,4.08599481872601,3.99376986466233,7.51751840062105,8.87430142943374,10.4182674111352,3.07101298901519,1.68828783009504,6.26472815884921,4.71405736757868,3.55929201997757,5.40558392893372,0.227178579999552,0.302286240427142,2.31891590961342,0,1.3599426674155,0,0,0.448026887097336,0.280888840263504,0.681721290312231,0.779358013808606,0,2.25349471642689,1.28326477414318,2.54805239706646,7.11066703153331,0.216491041011214,0,0.505524445014783,0.34255163915718,0,1.03909497345377,1.38788261412909,1.21786191324856,1.61430848079241,0.904335843315735,1.76383060703557,0.628332956648377,0,0.289198713839823,0,0.647067399789637,0.441683036920787,0,0,3.22058876712702,3.35114730901528,0.766371165625774,0,0,0,2.24685959107234,0.457500602818626,6.28271760564322,2.78118912307642,2.81287003063364,3.74018480207208,2.75810147215188,2.64782346010822,1.36847667671102,1.76905930903572,0.841767423545896,1.82168620147785,2.75882525320168,1.80062129805349,4.21973489940002,2.4493139694478,1.7935920839879,3.09215691047105,1.55222022443409,2.80238390812695,2.64748512234947,1.93546236580344,2.19195732427575,1.39023624612799,1.74126083261083,1.64625709126355,2.9855140022774,0,0,0,0.414251545071004,0,1.08037236876609,1.18372367792605,0.393528463494808,0.771335564436891,0.465067889500816,1.07309360559848,0.583826711835847,0,0.32833492815819,0.729619285912702,0.584799949701329,0.219550115291051,0.402619256281115,2.94405927989778,3.80747065803352,0,0.793351699990633,2.55945900642281,2.32236671860439,0.77320476793256,0.605050573870028,0.667134131534611,1.33157938278791,0,0.823494773620054,1.50801125280162,0.994782360205754,0.974820435595601,1.79763881730844,0.432276099749388,0.597423819763102,2.27601481143698,2.51346727741403,2.25415471346161,2.24016460629846,2.13347735884388,2.73529697572242,1.89709611372772,1.47610147979602,1.8839847340965,1.60416313098341,0,0,0.196558995113203,0.224862112384854,0,0,0.25462585178142,0,0.486405680325106,0.274561413188081,0,0.372140947668503,1.24815069245824,0.252578877947112,0.538192240565737,0.964887042726734,0.184753190166605,3.03186258832776,1.62964976442026,1.35796068620151,1.87752198630802,1.17254380209271,0.714130922658041,1.36593553500459,0.630540576424764,1.7717175171902,1.75400245523236,0.983179888294428,0.690739927463582,1.01254341007058,0,0,0,0.551873492609465,2.40825884981688,2.34423373184406,0.491804836130026,0,3.15508219416257,1.56175497718655,3.01592756825919,1.91175038362042,1.11399337041197,2.26461224631066,2.42886421004937,2.04579100537918,3.95287777946523,1.92792789853084,1.98716119291576,3.5613120733451,3.74640006513225,2.3095817216155,0,2.18502572539483,1.81394134178851,0.565815239267694,1.77181135728464,1.22974059177571,1.55056975900933,0.727067458955011,2.13898427030833,0,0,0,2.04263763452273,3.24109969256358,3.75140182969988,1.28602221018955,2.12808280370728,3.56737635204141,2.79733335023606,4.56697423671899,0,0,0.220528398054962,0.65954501176592,2.09903754704677,0.844380948994182,1.07435109602823,0.164140899745061,0.291480836629851,2.22510362412612,0,1.23832120777933,1.29636169158798,0.188368457004691,0,0,0,0,0.138199973804424,0,3.00519193902079,2.23651413839534,1.51207477150522,1.25452977608681,1.31017538247707,0.944050424693745,1.23980183588004,0.785267825952089,0.90730481304255,0,0,3.13984746692355,2.97825282822776,2.52786544847262,3.35815541042101,2.70329800785245,2.8165737274981,2.47388331203505,2.20204623293993,0,0.288030006257865,0.316011120628178,1.21635129174099,0.513554785824136,0.649604114888975,0.358053391334963,0.198681354781265,0,0.147689527174577,0.100966449948148,0.228620419965,0.302478555410522,0,0.0962118416403295,0.233753804363138,0.453460767230423,0.221985953374065,0.0897138566094757,0.167884616364078,0.772758376128762,0.563047426353546,1.09890974560359,0.428736758158132,0.501572104035363,1.6942555278512,2.30162618253588,4.01026859407578,2.06223818812425,2.74033007908257,3.7769694869485,5.40018000185445,1.80128481289688,2.26571204492102,3.10656187051092,2.80225838477277,5.58634822761443,3.58540572083682,1.45864030240976,1.88651846365184,1.10306105070008,2.00022055021454,1.44224540067226,1.28367683836726,1.26348605881899,1.01391719956096,1.32038438970253,1.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|phase1_expression=3.84357233051505,0.697950815278722,0.909998478779072,0.60492842261366,0.500895729946347,1.17515490338323,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0.47997726838022,0.45881856213434,0,0,0,0.570070258369122,1.00812051903972,0.221730510655305,0,0,0,0.866554859253824,0.997407872150954,1.02084678131185,0,0,0,0,0,0,1.1330713617802,1.4192770370732,1.46837401729345,0.782391344348039,2.39827672018491,2.41654801007919,2.13872888981712,2.93971485413261,0,0,0,0,0,1.43266719969378,1.54701627683233,8.49729135610311,7.93486468908049,12.6766280701236,1.35537812827653,0.889294796111139,0,0.988866362566974,0,2.39680088414724,5.76327457982332,6.42875596312561,7.02030879324791,6.09942387919008,6.85562362569129,5.30084498283872,4.5321595709533,6.3258010872036,10.1114066527102,2.20231761998777,4.08599481872601,3.99376986466233,7.51751840062105,8.87430142943374,10.4182674111352,3.07101298901519,1.68828783009504,6.26472815884921,4.71405736757868,3.55929201997757,5.40558392893372,0.227178579999552,0.302286240427142,2.31891590961342,0,1.3599426674155,0,0,0.448026887097336,0.280888840263504,0.681721290312231,0.779358013808606,0,2.25349471642689,1.28326477414318,2.54805239706646,7.11066703153331,0.216491041011214,0,0.505524445014783,0.34255163915718,0,1.03909497345377,1.38788261412909,1.21786191324856,1.61430848079241,0.904335843315735,1.76383060703557,0.628332956648377,0,0.289198713839823,0,0.647067399789637,0.441683036920787,0,0,3.22058876712702,3.35114730901528,0.766371165625774,0,0,0,2.24685959107234,0.457500602818626,6.28271760564322,2.78118912307642,2.81287003063364,3.74018480207208,2.75810147215188,2.64782346010822,1.36847667671102,1.76905930903572,0.841767423545896,1.82168620147785,2.75882525320168,1.80062129805349,4.21973489940002,2.4493139694478,1.7935920839879,3.09215691047105,1.55222022443409,2.80238390812695,2.64748512234947,1.93546236580344,2.19195732427575,1.39023624612799,1.74126083261083,1.64625709126355,2.9855140022774,0,0,0,0.414251545071004,0,1.08037236876609,1.18372367792605,0.393528463494808,0.771335564436891,0.465067889500816,1.07309360559848,0.583826711835847,0,0.32833492815819,0.729619285912702,0.584799949701329,0.219550115291051,0.402619256281115,2.94405927989778,3.80747065803352,0,0.793351699990633,2.55945900642281,2.32236671860439,0.77320476793256,0.605050573870028,0.667134131534611,1.33157938278791,0,0.823494773620054,1.50801125280162,0.994782360205754,0.974820435595601,1.79763881730844,0.432276099749388,0.597423819763102,2.27601481143698,2.51346727741403,2.25415471346161,2.24016460629846,2.13347735884388,2.73529697572242,1.89709611372772,1.47610147979602,1.8839847340965,1.60416313098341,0,0,0.196558995113203,0.224862112384854,0,0,0.25462585178142,0,0.486405680325106,0.274561413188081,0,0.372140947668503,1.24815069245824,0.252578877947112,0.538192240565737,0.964887042726734,0.184753190166605,3.03186258832776,1.62964976442026,1.35796068620151,1.87752198630802,1.17254380209271,0.714130922658041,1.36593553500459,0.630540576424764,1.7717175171902,1.75400245523236,0.983179888294428,0.690739927463582,1.01254341007058,0,0,0,0.551873492609465,2.40825884981688,2.34423373184406,0.491804836130026,0,3.15508219416257,1.56175497718655,3.01592756825919,1.91175038362042,1.11399337041197,2.26461224631066,2.42886421004937,2.04579100537918,3.95287777946523,1.92792789853084,1.98716119291576,3.5613120733451,3.74640006513225,2.3095817216155,0,2.18502572539483,1.81394134178851,0.565815239267694,1.77181135728464,1.22974059177571,1.55056975900933,0.727067458955011,2.13898427030833,0,0,0,2.04263763452273,3.24109969256358,3.75140182969988,1.28602221018955,2.12808280370728,3.56737635204141,2.79733335023606,4.56697423671899,0,0,0.220528398054962,0.65954501176592,2.09903754704677,0.844380948994182,1.07435109602823,0.164140899745061,0.291480836629851,2.22510362412612,0,1.23832120777933,1.29636169158798,0.188368457004691,0,0,0,0,0.138199973804424,0,3.00519193902079,2.23651413839534,1.51207477150522,1.25452977608681,1.31017538247707,0.944050424693745,1.23980183588004,0.785267825952089,0.90730481304255,0,0,3.13984746692355,2.97825282822776,2.52786544847262,3.35815541042101,2.70329800785245,2.8165737274981,2.47388331203505,2.20204623293993,0,0.288030006257865,0.316011120628178,1.21635129174099,0.513554785824136,0.649604114888975,0.358053391334963,0.198681354781265,0,0.147689527174577,0.100966449948148,0.228620419965,0.302478555410522,0,0.0962118416403295,0.233753804363138,0.453460767230423,0.221985953374065,0.0897138566094757,0.167884616364078,0.772758376128762,0.563047426353546,1.09890974560359,0.428736758158132,0.501572104035363,1.6942555278512,2.30162618253588,4.01026859407578,2.06223818812425,2.74033007908257,3.7769694869485,5.40018000185445,1.80128481289688,2.26571204492102,3.10656187051092,2.80225838477277,5.58634822761443,3.58540572083682,1.45864030240976,1.88651846365184,1.10306105070008,2.00022055021454,1.44224540067226,1.28367683836726,1.26348605881899,1.01391719956096,1.32038438970253,1.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| ||
|short_description=p1@Vps37d | |short_description=p1@Vps37d | ||
}} | }} |
Latest revision as of 00:07, 2 October 2015
Short description: | p1@Vps37d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vps37d_5end |
Coexpression cluster: | MCL_coexpression_mm9:720 |
Association with transcript: | 5bp_to_ENSMUST00000067935, ENSMUST00000076203, NM_001199677, NM_177574, uc008zxq.2, uc008zxr.2_5end |
EntrezGene: | Vps37d |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.68e-18 | 33 |
neuronal stem cell | 2.68e-18 | 33 |
neuroblast | 2.68e-18 | 33 |
electrically signaling cell | 2.68e-18 | 33 |
ectodermal cell | 4.40e-17 | 44 |
neurectodermal cell | 4.40e-17 | 44 |
neural cell | 8.37e-17 | 43 |
electrically responsive cell | 1.62e-16 | 39 |
electrically active cell | 1.62e-16 | 39 |
CNS neuron (sensu Vertebrata) | 6.29e-16 | 23 |
neuroblast (sensu Vertebrata) | 6.29e-16 | 23 |
embryonic cell | 1.22e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.76e-31 | 73 |
nervous system | 1.14e-29 | 75 |
ectoderm-derived structure | 4.87e-26 | 95 |
ectoderm | 4.87e-26 | 95 |
presumptive ectoderm | 4.87e-26 | 95 |
neurectoderm | 1.36e-25 | 64 |
neural plate | 1.36e-25 | 64 |
presumptive neural plate | 1.36e-25 | 64 |
regional part of nervous system | 3.06e-24 | 54 |
neural tube | 7.06e-23 | 52 |
neural rod | 7.06e-23 | 52 |
future spinal cord | 7.06e-23 | 52 |
neural keel | 7.06e-23 | 52 |
ecto-epithelium | 1.51e-22 | 73 |
brain | 2.69e-19 | 47 |
future brain | 2.69e-19 | 47 |
pre-chordal neural plate | 2.92e-19 | 49 |
regional part of brain | 3.80e-19 | 46 |
anterior neural tube | 6.43e-18 | 40 |
regional part of forebrain | 1.17e-17 | 39 |
forebrain | 1.17e-17 | 39 |
future forebrain | 1.17e-17 | 39 |
gray matter | 4.90e-17 | 34 |
structure with developmental contribution from neural crest | 1.49e-15 | 92 |
brain grey matter | 1.00e-13 | 29 |
regional part of telencephalon | 1.00e-13 | 29 |
telencephalon | 1.00e-13 | 29 |
cerebral cortex | 1.23e-10 | 21 |
cerebral hemisphere | 1.23e-10 | 21 |
pallium | 1.23e-10 | 21 |
regional part of cerebral cortex | 3.51e-08 | 17 |
embryo | 2.72e-07 | 320 |