FF:10096-102C6: Difference between revisions

Latest revision as of 12:21, 3 June 2020

Name:	testis, adult, pool2
Species:	Human (Homo sapiens)
Library ID:	CNhs12998
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	testis
dev stage	14-64 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8101369A-16
catalog number	Cat: 636643 Lot: 8101369A-16
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005187

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12998		CAGE		DRX008740		DRR009612

Accession ID Hg19

Library id		BAM		CTSS
CNhs12998		DRZ001037		DRZ002422

Accession ID Hg38

Library id		BAM		CTSS
CNhs12998		DRZ012387		DRZ013772

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0.901
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.241
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.209
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.949
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.103
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.103
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0581
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.103
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.151
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.532
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.103
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0.103
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.015
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.17
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.103
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0.186
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0785
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0565
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.046
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.103
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.103
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0457
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0802
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.103
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.23
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.103
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.186
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0544
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.103
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0583
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12998

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.91718e-4
MA0003.1	MA0003.1	0.685
MA0004.1	MA0004.1	0.687
MA0006.1	MA0006.1	0.462
MA0007.1	MA0007.1	0.739
MA0009.1	MA0009.1	0.717
MA0014.1	MA0014.1	0.602
MA0017.1	MA0017.1	0.298
MA0018.2	MA0018.2	1.74399e-5
MA0019.1	MA0019.1	0.054
MA0024.1	MA0024.1	0.0355
MA0025.1	MA0025.1	0.902
MA0027.1	MA0027.1	0.761
MA0028.1	MA0028.1	0.0533
MA0029.1	MA0029.1	0.0424
MA0030.1	MA0030.1	0.877
MA0031.1	MA0031.1	0.291
MA0035.2	MA0035.2	0.0501
MA0038.1	MA0038.1	0.00577
MA0039.2	MA0039.2	0.0587
MA0040.1	MA0040.1	0.604
MA0041.1	MA0041.1	0.296
MA0042.1	MA0042.1	0.865
MA0043.1	MA0043.1	0.00669
MA0046.1	MA0046.1	0.467
MA0047.2	MA0047.2	0.1
MA0048.1	MA0048.1	0.915
MA0050.1	MA0050.1	0.00906
MA0051.1	MA0051.1	0.00817
MA0052.1	MA0052.1	0.689
MA0055.1	MA0055.1	0.174
MA0057.1	MA0057.1	0.939
MA0058.1	MA0058.1	0.731
MA0059.1	MA0059.1	0.514
MA0060.1	MA0060.1	8.48263e-37
MA0061.1	MA0061.1	5.68073e-4
MA0062.2	MA0062.2	0.00402
MA0065.2	MA0065.2	0.78
MA0066.1	MA0066.1	0.341
MA0067.1	MA0067.1	0.442
MA0068.1	MA0068.1	0.0188
MA0069.1	MA0069.1	0.832
MA0070.1	MA0070.1	0.0836
MA0071.1	MA0071.1	0.588
MA0072.1	MA0072.1	0.236
MA0073.1	MA0073.1	0.697
MA0074.1	MA0074.1	0.379
MA0076.1	MA0076.1	0.0098
MA0077.1	MA0077.1	0.189
MA0078.1	MA0078.1	0.0525
MA0079.2	MA0079.2	0.184
MA0080.2	MA0080.2	1.79759e-7
MA0081.1	MA0081.1	0.131
MA0083.1	MA0083.1	0.227
MA0084.1	MA0084.1	0.821
MA0087.1	MA0087.1	0.854
MA0088.1	MA0088.1	0.714
MA0090.1	MA0090.1	0.401
MA0091.1	MA0091.1	0.327
MA0092.1	MA0092.1	0.0745
MA0093.1	MA0093.1	0.645
MA0099.2	MA0099.2	1.71417e-11
MA0100.1	MA0100.1	3.52351e-10
MA0101.1	MA0101.1	0.0133
MA0102.2	MA0102.2	0.0861
MA0103.1	MA0103.1	0.715
MA0104.2	MA0104.2	0.248
MA0105.1	MA0105.1	2.66475e-6
MA0106.1	MA0106.1	0.00474
MA0107.1	MA0107.1	3.53774e-4
MA0108.2	MA0108.2	0.0409
MA0111.1	MA0111.1	0.547
MA0112.2	MA0112.2	5.48458e-4
MA0113.1	MA0113.1	0.274
MA0114.1	MA0114.1	0.366
MA0115.1	MA0115.1	0.0727
MA0116.1	MA0116.1	0.00155
MA0117.1	MA0117.1	0.781
MA0119.1	MA0119.1	0.0389
MA0122.1	MA0122.1	0.661
MA0124.1	MA0124.1	0.953
MA0125.1	MA0125.1	0.86
MA0131.1	MA0131.1	0.0606
MA0135.1	MA0135.1	0.149
MA0136.1	MA0136.1	0.00236
MA0137.2	MA0137.2	0.104
MA0138.2	MA0138.2	0.215
MA0139.1	MA0139.1	0.47
MA0140.1	MA0140.1	9.81642e-4
MA0141.1	MA0141.1	0.773
MA0142.1	MA0142.1	0.174
MA0143.1	MA0143.1	0.308
MA0144.1	MA0144.1	0.0205
MA0145.1	MA0145.1	0.13
MA0146.1	MA0146.1	0.869
MA0147.1	MA0147.1	0.383
MA0148.1	MA0148.1	0.115
MA0149.1	MA0149.1	0.552
MA0150.1	MA0150.1	9.17666e-4
MA0152.1	MA0152.1	0.523
MA0153.1	MA0153.1	0.858
MA0154.1	MA0154.1	5.49567e-4
MA0155.1	MA0155.1	0.666
MA0156.1	MA0156.1	0.09
MA0157.1	MA0157.1	0.366
MA0159.1	MA0159.1	0.281
MA0160.1	MA0160.1	0.684
MA0162.1	MA0162.1	0.245
MA0163.1	MA0163.1	0.0559
MA0164.1	MA0164.1	0.778
MA0258.1	MA0258.1	0.0625
MA0259.1	MA0259.1	0.116

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12998

Novel motif	Logo	P-value
1	1	0.178
10	10	0.355
100	100	0.565
101	101	0.529
102	102	0.482
103	103	0.419
104	104	0.59
105	105	0.233
106	106	1.50768e-6
107	107	0.00332
108	108	0.282
109	109	0.861
11	11	0.132
110	110	0.381
111	111	0.978
112	112	0.0248
113	113	0.766
114	114	0.329
115	115	0.793
116	116	0.374
117	117	0.599
118	118	0.505
119	119	0.168
12	12	0.887
120	120	0.0753
121	121	0.453
122	122	0.892
123	123	0.313
124	124	0.368
125	125	0.662
126	126	0.659
127	127	0.264
128	128	0.00178
129	129	0.561
13	13	0.689
130	130	0.402
131	131	0.257
132	132	0.631
133	133	0.968
134	134	0.802
135	135	0.128
136	136	0.0305
137	137	0.227
138	138	0.116
139	139	0.399
14	14	0.421
140	140	0.151
141	141	0.162
142	142	0.919
143	143	0.993
144	144	0.949
145	145	0.152
146	146	0.644
147	147	0.421
148	148	0.137
149	149	0.0707
15	15	0.362
150	150	0.358
151	151	0.172
152	152	0.0533
153	153	0.283
154	154	0.211
155	155	0.315
156	156	0.597
157	157	0.876
158	158	0.0493
159	159	0.43
16	16	0.334
160	160	0.0346
161	161	0.916
162	162	0.818
163	163	0.195
164	164	0.00448
165	165	0.358
166	166	0.375
167	167	0.812
168	168	0.254
169	169	0.0576
17	17	0.111
18	18	0.0775
19	19	0.35
2	2	0.115
20	20	0.325
21	21	0.548
22	22	0.314
23	23	0.00914
24	24	0.811
25	25	0.743
26	26	0.296
27	27	0.0967
28	28	0.823
29	29	0.969
3	3	0.0916
30	30	0.792
31	31	0.208
32	32	0.2
33	33	0.754
34	34	0.502
35	35	0.418
36	36	0.0896
37	37	0.119
38	38	0.501
39	39	0.713
4	4	0.0552
40	40	0.754
41	41	0.263
42	42	0.329
43	43	0.19
44	44	0.354
45	45	0.631
46	46	0.114
47	47	0.469
48	48	0.379
49	49	0.865
5	5	0.218
50	50	0.978
51	51	0.191
52	52	0.118
53	53	0.279
54	54	0.216
55	55	0.147
56	56	0.238
57	57	0.167
58	58	0.511
59	59	0.0469
6	6	0.747
60	60	0.0272
61	61	0.752
62	62	0.258
63	63	0.204
64	64	0.55
65	65	0.119
66	66	3.61844e-8
67	67	0.516
68	68	0.262
69	69	0.792
7	7	0.7
70	70	0.23
71	71	0.128
72	72	0.495
73	73	0.137
74	74	0.273
75	75	0.312
76	76	0.725
77	77	0.0759
78	78	0.0652
79	79	0.594
8	8	0.433
80	80	0.34
81	81	0.299
82	82	0.15
83	83	0.37
84	84	0.515
85	85	0.0273
86	86	0.362
87	87	0.385
88	88	0.699
89	89	0.118
9	9	0.335
90	90	0.101
91	91	0.182
92	92	0.0717
93	93	0.324
94	94	0.0133
95	95	0.854
96	96	0.42
97	97	0.866
98	98	0.681
99	99	0.271

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12998

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010026 human testis - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000473 (testis)
0000991 (gonad)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010026 (human testis - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005187
+|accession_numbers=CAGE;DRX008740;DRR009612;DRZ001037;DRZ002422;DRZ012387;DRZ013772
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000473,UBERON:0000991,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:5111723..5111807,+!p2@RBAK!2.56!365.77!RBAK;;chr12:107078493..107078533,+!p3@RFX4!2.39!243.58!RFX4;;chr6:134273321..134273418,+!p4@TBPL1!2.22!163.99!TBPL1;;chr12:10875733..10875752,-!p8@CSDA!2.11!126.48!CSDA;;chr17:56565736..56565779,-!p1@HSF5!2.06!113.08!HSF5;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.01!101.29!PEG3;;chr19:39390292..39390315,+!p6@NFKBIB!1.99!96.47!NFKBIB;;chr12:10875768..10875808,-!p3@CSDA!1.98!140.68!CSDA;;chr17:7197844..7197869,-!p2@YBX2!1.96!89.77!YBX2;;chr19:39390320..39390346,+!p5@NFKBIB!1.94!86.28!NFKBIB;;chr1:40105299..40105326,-!p1@HEYL!1.92!82.53!HEYL;;chr1:166958504..166958525,+!p1@MAEL!1.92!82.00!MAEL;;chr1:53925516..53925575,+!p1@DMRTB1!1.87!73.96!DMRTB1;;chr10:35464513..35464548,+!p14@CREM!1.85!69.40!CREM;;chr17:7197881..7197901,-!p3@YBX2!1.81!64.31!YBX2;;chr1:202776392..202776436,-!p4@KDM5B!1.81!64.31!KDM5B;;chr4:57547454..57547469,-!p1@HOPX!1.79!60.83!HOPX;;chr3:22414095..22414138,-!p7@ZNF385D!1.78!58.95!ZNF385D;;chr1:53925063..53925076,+!p2@DMRTB1!1.73!53.32!DMRTB1;;chrX:25034067..25034088,-!p1@ARX!1.69!48.23!ARX;;chr16:31085961..31086009,+!p2@ZNF646!1.66!59.49!ZNF646;;chr14:23762777..23762821,-!p3@HOMEZ!1.66!44.48!HOMEZ;;chr19:42349092..42349121,+!p1@DMRTC2!1.65!43.95!DMRTC2;;chr19:6110555..6110617,-!p2@RFX2!1.64!138.81!RFX2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.63!87.89!SOHLH2;;chr19:36132631..36132653,+!p3@ETV2!1.63!42.07!ETV2;;chr13:73629107..73629148,+!p8@KLF5!1.61!39.93!KLF5;;chr3:107364769..107364793,+!p12@BBX!1.59!37.78!BBX;;chr14:89060749..89060783,+!p6@ZC3H14!1.57!36.44!ZC3H14;;chrX:84498989..84499003,+!p1@ZNF711!1.55!47.16!ZNF711;;chr6:134273300..134273320,+!p7@TBPL1!1.55!34.30!TBPL1;;chr17:15983824..15983838,-!p6@NCOR1!1.53!32.69!NCOR1;;chr1:43148029..43148040,+!p7@YBX1!1.52!39.39!YBX1;;chr5:118965244..118965287,+!p1@FAM170A!1.51!31.08!FAM170A;;chr13:45009414..45009442,-!p10@TSC22D1!1.50!30.55!TSC22D1;;chrX:30327504..30327509,-!p1@NR0B1!1.50!30.28!NR0B1;;chr1:26700984..26701002,-!p3@ZNF683!1.48!29.21!ZNF683;;chr3:114070572..114070597,-!p24@ZBTB20!1.48!28.94!ZBTB20;;chrX:131547625..131547644,-!p4@MBNL3!1.48!28.94!MBNL3;;chr17:7197911..7197964,-!p1@YBX2!1.47!28.67!YBX2;;chr10:60144911..60144939,+!p2@TFAM!1.47!28.40!TFAM;;chr20:56100179..56100208,-!p1@CTCFL!1.45!27.06!CTCFL;;chr1:166958538..166958552,+!p2@MAEL!1.44!26.80!MAEL;;chr3:114070550..114070569,-!p28@ZBTB20!1.44!26.80!ZBTB20;;chr9:841691..841702,+!p1@DMRT1!1.44!26.53!DMRT1;;chr1:114301755..114301796,-!p3@PHTF1!1.43!29.21!PHTF1;;chrY:21906594..21906622,-!p1@KDM5D!1.40!24.38!KDM5D;;chr4:4291780..4291807,-!p4@LYAR!1.40!24.38!LYAR;;chr10:35456485..35456498,+!p22@CREM!1.40!24.12!CREM;;chr11:32457075..32457095,-!p1@WT1!1.39!23.58!WT1;;chr14:24025106..24025172,-!p2@ZFHX2!1.35!27.60!ZFHX2;;chr4:26322996..26323031,+!p21@RBPJ!1.34!20.63!RBPJ;;chr8:11561684..11561751,+!p1@GATA4!1.34!20.63!GATA4;;chr20:61051039..61051057,-!p1@GATA5!1.32!19.83!GATA5;;chr1:166958364..166958375,+!p3@MAEL!1.31!19.56!MAEL;;chr12:23737512..23737527,-!p8@SOX5!1.31!19.29!SOX5;;chr5:157079374..157079395,-!p1@SOX30!1.31!19.29!SOX30;;chr15:83952197..83952219,-!p6@BNC1!1.29!18.49!BNC1;;chr5:322733..322758,+!p2@AHRR!1.28!18.22!AHRR;;chr15:101084446..101084488,-!p3@CERS3!1.27!17.69!CERS3;;chr14:64804818..64804842,-!p3@ESR2!1.27!17.69!ESR2;;chr11:32452357..32452363,-!p5@WT1!1.27!17.42!WT1;;chr20:39928705..39928740,-!p11@ZHX3!1.27!17.42!ZHX3;;chr1:8939229..8939249,-!p21@ENO1!1.26!17.15!ENO1;;chr1:151804244..151804310,-!p1@RORC!1.25!16.88!RORC;;chr19:53758167..53758190,-!p3@ZNF677!1.25!16.61!ZNF677;;chr1:214161272..214161322,+!p1@PROX1!1.23!22.24!PROX1;;chr11:65686689..65686700,+!p14@DRAP1!1.22!15.54!DRAP1;;chr5:93077293..93077310,-!p1@POU5F2!1.22!15.54!POU5F2;;chr9:2015215..2015222,+!p35@SMARCA2!1.21!15.27!SMARCA2;;chr14:37051798..37051831,-!p1@NKX2-8!1.20!15.01!NKX2-8;;chr19:48076356..48076387,-!p@chr19:48076356..48076387,-!1.20!14.74!ZNF541;;chr1:247313250..247313291,-!p2@ZNF124!1.20!14.74!ZNF124;;chr19:14117622..14117633,-!p3@RFX1!1.20!14.74!RFX1;;chr19:40503013..40503044,+!p3@ZNF546!1.19!16.61!ZNF546;;chr6:28226984..28227005,-!p4@ZKSCAN4!1.19!14.47!ZKSCAN4;;chr17:70117153..70117174,+!p1@SOX9!1.18!143.36!SOX9;;chr2:176994408..176994492,+!p1@HOXD8!1.18!14.20!HOXD8;;chr5:157079401..157079413,-!p3@SOX30!1.17!13.93!SOX30;;chr12:46246608..46246632,+!p13@ARID2!1.17!13.67!ARID2;;chr19:57352109..57352153,-!p2@ZIM2!1.17!13.67!ZIM2;;chr18:6414884..6414942,-!p1@L3MBTL4!1.16!16.88!L3MBTL4;;chr19:58545369..58545404,+!p2@ZSCAN1!1.16!13.40!ZSCAN1;;chr1:202776145..202776171,-!p10@KDM5B!1.16!13.40!KDM5B;;chr8:23540441..23540466,-!p1@NKX3-1!1.15!26.53!NKX3-1;;chr7:73038839..73038862,-!p1@MLXIPL!1.15!13.13!MLXIPL;;chr19:42349060..42349071,+!p2@DMRTC2!1.15!13.13!DMRTC2;;chr16:66835480..66835492,-!p1@ENST00000559050!1.15!13.13!CCDC79;;chrX:79270245..79270257,+!p1@TBX22!1.15!13.13!TBX22;;chrX:103499602..103499617,-!p1@ESX1!1.15!13.13!ESX1;;chr13:45151509..45151539,-!p6@TSC22D1!1.14!21.71!TSC22D1;;chr14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BF2!0.53!2.41!EBF2;;chr8:30891078..30891128,-!p2@PURG!0.53!2.41!PURG;;chr22:38379894..38379899,-!p12@SOX10!0.53!2.41!SOX10;;chr2:178129555..178129572,-!p12@NFE2L2!0.53!2.41!NFE2L2;;chr2:5832508..5832524,+!p1@SOX11!0.53!2.41!SOX11;;chr3:147127142..147127168,+!p1@ZIC1!0.53!2.41!ZIC1;;chr4:109089215..109089236,-!p25@LEF1!0.53!2.41!LEF1;;chr17:56565686..56565693,-!p5@HSF5!0.53!2.41!HSF5;;chr19:22966893..22966924,-!p2@ZNF99!0.53!2.41!ZNF99;;chr1:14026671..14026705,+!p2@PRDM2!0.52!17.95!PRDM2;;chr19:49140609..49140643,-!p1@DBP!0.52!16.35!DBP;;chr19:35264089..35264146,-!p1@ZNF599!0.52!15.01!ZNF599;;chr9:2015306..2015323,+!p3@SMARCA2!0.52!7.24!SMARCA2;;chr3:14989050..14989069,+!p2@NR2C2!0.52!6.70!NR2C2;;chr1:35656397..35656455,-!p3@SFPQ!0.52!6.43!SFPQ;;chr4:56412767..56412799,-!p3@CLOCK!0.52!6.16!CLOCK;;chr4:144435112..144435176,+!p3@SMARCA5!0.52!5.63!SMARCA5;;chr11:63684602..63684664,-!p1@RCOR2!0.52!5.36!RCOR2;;chr18:51750414..51750449,-!p5@MBD2!0.52!5.09!MBD2;;chr12:6798107..6798140,-!p7@ZNF384!0.52!4.02!ZNF384;;chr12:6798731..6798751,-!p4@ZNF384!0.52!4.02!ZNF384;;chr19:57078854..57078889,+!p1@ZNF470!0.52!4.02!ZNF470;;chr1:244219775..244219893,+!p2@ZNF238!0.52!3.48!ZNF238;;chr3:126076264..126076305,-!p2@KLF15!0.52!3.48!KLF15;;chr7:77428282..77428293,+!p4@PHTF2!0.52!2.95!PHTF2;;chr15:64752747..64752794,+!p1@ZNF609!0.51!25.72!ZNF609;;chr22:41777927..41777971,+!p1@TEF!0.51!24.38!TEF;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.51!18.76!ZNF580;;chr19:19516464..19516492,+!p4@GATAD2A!0.51!14.47!GATAD2A;;chr3:114819124..114819200,-!p3@ZBTB20!0.51!6.16!ZBTB20;;chr17:7492684..7492778,-!p2@SOX15!0.51!5.63!SOX15;;chr6:41514005..41514026,+!p3@FOXP4!0.51!5.63!FOXP4;;chr19:52839515..52839572,+!p1@ZNF610!0.51!5.63!ZNF610;;chr19:8578683..8578750,-!p2@ZNF414!0.51!5.63!ZNF414;;chr11:130184672..130184696,-!p3@ZBTB44!0.51!4.82!ZBTB44;;chr11:9482521..9482533,+!p2@ZNF143!0.51!4.82!ZNF143;;chr3:52001396..52001425,-!p4@PCBP4!0.51!4.56!PCBP4;;chr3:114866124..114866149,-!p5@ZBTB20!0.51!4.29!ZBTB20;;chr3:14989138..14989151,+!p6@NR2C2!0.51!2.68!NR2C2;;chr6:45296048..45296082,+!p1@RUNX2!0.51!2.68!RUNX2;;chr8:37963028..37963070,+!p1@ASH2L!0.50!45.82!ASH2L;;chr22:21356016..21356105,-!p1@THAP7!0.50!45.02!THAP7;;chr19:19496728..19496813,+!p2@GATAD2A!0.50!34.57!GATAD2A;;chr17:47439568..47439641,-!p2@ZNF652!0.50!16.08!ZNF652;;chr19:11998584..11998649,+!p1@ZNF69!0.50!12.33!ZNF69;;chr9:125693757..125693818,-!p1@ZBTB26!0.50!12.33!ZBTB26;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.50!10.99!ZNF747;;chr3:185826764..185826803,-!p2@ETV5!0.50!10.18!ETV5;;chr16:30569678..30569720,-!p1@ZNF764!0.50!9.65!ZNF764;;chr15:60884747..60884774,-!p3@RORA!0.50!6.43!RORA;;chr10:43932296..43932360,+!p1@ZNF487P!0.50!5.36!ZNF487P;;chr1:42800836..42800847,-!p3@FOXJ3!0.50!5.09!FOXJ3;;chr1:43148625..43148710,+!p3@YBX1!0.50!4.56!YBX1;;chr1:35656352..35656383,-!p7@SFPQ!0.50!4.29!SFPQ;;chr19:12444440..12444455,-!p1@ZNF563!0.50!4.29!ZNF563;;chr16:68119440..68119480,+!p4@NFATC3!0.50!4.02!NFATC3;;chr1:170633348..170633399,+!p2@PRRX1!0.50!3.22!PRRX1;;chr19:11708229..11708240,+!p3@ZNF627!0.50!2.95!ZNF627;;chr8:106330696..106330719,+!p2@ZFPM2!0.50!2.95!ZFPM2;;chr14:33408072..33408114,+!p2@NPAS3!0.50!2.68!NPAS3;;chr10:131762589..131762601,-!p3@EBF3!0.50!2.14!EBF3;;chr10:51576356..51576363,+!p17@NCOA4!0.50!2.14!NCOA4;;chr11:113930401..113930422,+!p3@ZBTB16!0.50!2.14!ZBTB16;;chr11:47400078..47400106,-!p1@SPI1!0.50!2.14!SPI1;;chr12:10875713..10875719,-!p21@CSDA!0.50!2.14!CSDA;;chr6:28049020..28049034,+!p6@ZNF165!0.50!2.14!ZNF165;;chr7:64337960..64337986,+!p6@ZNF273!0.50!2.14!ZNF273;;chr7:73038867..73038878,-!p2@MLXIPL!0.50!2.14!MLXIPL;;chr8:11534512..11534519,+!p7@GATA4!0.50!2.14!GATA4;;chr2:180726058..180726098,-!p3@ZNF385B!0.50!2.14!ZNF385B;;chr2:27371919..27371935,+!p2@TCF23!0.50!2.14!TCF23;;chr2:45168875..45168916,+!p1@SIX3!0.50!2.14!SIX3;;chr4:144464715..144464750,+!p7@SMARCA5!0.50!2.14!SMARCA5;;chr19:46800289..46800327,+!p2@HIF3A!0.50!2.14!HIF3A;;chr19:50529028..50529040,+!p5@ZNF473!0.50!2.14!ZNF473;;chr1:44584530..44584537,+!p6@KLF17!0.50!2.14!KLF17;;chr1:53925459..53925464,+!p8@DMRTB1!0.50!2.14!DMRTB1;;chr20:39928756..39928763,-!p20@ZHX3!0.50!2.14!ZHX3;;chr15:57210772..57210803,-!p7@ZNF280D!0.50!2.14!ZNF280D;;chr15:57540230..57540237,+!p42@TCF12!0.50!2.14!TCF12;;chr16:3493528..3493539,-!p2@ZNF597!0.50!2.14!ZNF597;;chr17:41739283..41739297,-!p1@MEOX1!0.50!2.14!MEOX1;;chr17:47439343..47439352,-!p9@ZNF652!0.50!2.14!ZNF652;;chr19:22193706..22193717,-!p2@ZNF208!0.50!2.14!ZNF208;;chr19:22398533..22398542,-!p@chr19:22398533..22398542,-!0.50!2.14!ZNF676;;chr9:3525848..3525863,-!p6@RFX3!0.50!2.14!RFX3;;chr9:129567282..129567353,+!p1@ZBTB43!0.49!36.18!ZBTB43;;chr8:144623595..144623646,-!p1@ZC3H3!0.49!27.33!ZC3H3;;chr1:6640046..6640101,+!p1@ZBTB48!0.49!21.71!ZBTB48;;chr19:37825540..37825588,+!p2@HKR1!0.49!19.03!HKR1;;chr13:45151434..45151507,-!p3@TSC22D1!0.49!15.01!TSC22D1;;chr10:35415978..35416050,+!p5@CREM!0.49!11.25!CREM;;chr19:37958086..37958150,-!p1@ZNF569!0.49!10.18!ZNF569;;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000473;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000991;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
+|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool2.CNhs12998.10096-102C6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool2.CNhs12998.10096-102C6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool2.CNhs12998.10096-102C6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool2.CNhs12998.10096-102C6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool2.CNhs12998.10096-102C6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10096-102C6
 |is_a=EFO:0002091;;FF:0010026
 |is_obsolete=
+|library_id=CNhs12998
+|library_id_phase_based=2:CNhs12998
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10096
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10096
 |name=testis, adult, pool2
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12998,LSID999,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=102
 |rna_catalog_number=Cat: 636643 Lot: 8101369A-16
@@ Line 60: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10096-102C6;search_select_hide=table117:FF:10096-102C6
 }}

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FF:10096-102C6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:21, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0