FF:10451-106G1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100 | |DRA_sample_Accession=CAGE@SAMD00005447 | ||
|accession_numbers=CAGE;DRX007870;DRR008742;DRZ000167;DRZ001552;DRZ011517;DRZ012902 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100067,FF:0102733,FF:0100669,FF:0100007 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chrX:84498989..84499003,+!p1@ZNF711!2.08!160.70!ZNF711;;chr12:8034651..8034657,+!p@chr12:8034651..8034657,+!1.92!82.68!NANOGP1;;chr7:28448965..28448994,+!p2@CREB5!1.71!171.37!CREB5;;chr15:76629123..76629151,+!p1@ISL2!1.68!51.41!ISL2;;chr2:172967621..172967637,-!p1@DLX2!1.59!97.86!DLX2;;chr8:81398682..81398697,+!p6@ZBTB10!1.55!45.40!ZBTB10;;chr7:28448995..28449011,+!p4@CREB5!1.54!46.75!CREB5;;chr1:935467..935484,-!p1@HES4!1.53!140.70!HES4;;chr19:23941647..23941672,-!p2@ZNF681!1.52!52.46!ZNF681;;chr7:28449026..28449037,+!p8@CREB5!1.50!30.67!CREB5;;chr1:212782094..212782109,+!p1@ATF3!1.49!776.72!ATF3;;chr22:21356345..21356367,-!p3@THAP7!1.48!38.93!THAP7;;chr6:20402102..20402152,+!p1@E2F3!1.47!113.49!E2F3;;chr11:615570..615721,-!p2@IRF7!1.47!55.47!IRF7;;chr1:227751231..227751273,+!p1@ZNF678!1.40!148.82!ZNF678;;chr7:27205136..27205164,-!p1@HOXA9!1.40!24.20!HOXA9;;chr17:46703942..46703964,-!p4@HOXB9!1.40!24.20!HOXB9;;chr6:19837592..19837621,+!p1@ID4!1.38!134.99!ID4;;chr11:615942..615957,-!p1@IRF7!1.37!204.74!IRF7;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.37!22.70!EN2;;chr17:46703687..46703740,-!p1@HOXB9!1.36!21.80!HOXB9;;chr21:34398234..34398250,+!p1@OLIG2!1.34!21.05!OLIG2;;chr5:172662197..172662216,-!p1@NKX2-5!1.34!20.89!NKX2-5;;chr7:99680302..99680329,-!p5@ZNF3!1.34!20.89!ZNF3;;chr17:46620898..46620927,-!p9@HOXB2!1.31!22.85!HOXB2;;chr10:124768217..124768228,-!p2@IKZF5!1.31!19.24!IKZF5;;chr17:8027418..8027432,-!p1@HES7!1.30!19.09!HES7;;chr20:42295713..42295738,+!p2@MYBL2!1.29!106.73!MYBL2;;chr1:935496..935509,-!p3@HES4!1.29!27.81!HES4;;chr7:28449015..28449024,+!p6@CREB5!1.28!18.04!CREB5;;chr19:23433144..23433204,-!p1@ZNF724P!1.26!76.82!ZNF724P;;chr19:33793430..33793447,-!p1@CEBPA!1.26!70.65!CEBPA;;chr15:76629007..76629012,+!p4@ISL2!1.26!17.29!ISL2;;chr6:90929475..90929486,-!p8@BACH2!1.26!17.14!BACH2;;chr6:44355499..44355514,+!p3@CDC5L!1.25!18.49!CDC5L;;chr6:56954867..56954882,+!p2@ZNF451!1.24!47.80!ZNF451;;chr12:108154309..108154359,-!p6@PRDM4!1.24!16.23!PRDM4;;chr6:126070769..126070801,+!p1@HEY2!1.23!18.19!HEY2;;chr2:223163706..223163730,-!p1@PAX3!1.23!16.08!PAX3;;chr6:90929463..90929474,-!p9@BACH2!1.22!15.63!BACH2;;chr19:21265028..21265052,+!p2@ZNF714!1.21!27.06!ZNF714;;chr19:11750566..11750627,+!p1@ZNF833P!1.21!20.59!ZNF833P;;chr5:43121586..43121601,+!p10@ZNF131!1.21!17.29!ZNF131;;chr19:21106081..21106115,+!p2@ZNF85!1.19!42.39!ZNF85;;chr2:122042770..122042785,-!p1@TFCP2L1!1.19!14.58!TFCP2L1;;chr7:35293685..35293718,-!p1@TBX20!1.18!14.28!TBX20;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.13!HOXC9;;chr5:134369905..134369972,-!p1@PITX1!1.16!20.44!PITX1;;chrX:84499081..84499115,+!p2@ZNF711!1.16!19.99!ZNF711;;chr1:91487774..91487802,-!p2@ZNF644!1.15!34.72!ZNF644;;chr1:227751287..227751298,+!p2@ZNF678!1.15!13.23!ZNF678;;chr7:64838786..64838809,+!p2@ZNF92!1.14!72.76!ZNF92;;chr7:27205106..27205134,-!p2@HOXA9!1.14!12.78!HOXA9;;chr17:46667594..46667619,-!p1@HOXB3!1.14!12.78!HOXB3;;chr1:91487836..91487854,-!p3@ZNF644!1.12!27.66!ZNF644;;chr17:4890649..4890664,-!p5@CAMTA2!1.12!12.33!CAMTA2;;chr19:21264991..21265026,+!p1@ZNF714!1.11!78.17!ZNF714;;chr2:200322654..200322707,-!p2@SATB2!1.11!17.29!SATB2;;chr3:40547564..40547616,+!p1@ZNF620!1.11!16.84!ZNF620;;chr10:8095593..8095625,+!p3@GATA3!1.11!13.83!GATA3;;chr14:37131058..37131139,+!p1@PAX9!1.11!12.03!PAX9;;chr20:42295745..42295765,+!p1@MYBL2!1.10!190.46!MYBL2;;chr10:104155480..104155534,+!p2@NFKB2!1.10!74.71!NFKB2;;chr19:22034809..22034878,-!p2@ZNF43!1.10!40.59!ZNF43;;chr19:21950332..21950356,-!p2@ZNF100!1.10!24.50!ZNF100;;chr19:24097706..24097731,+!p2@ZNF726!1.10!22.40!ZNF726;;chr10:97889464..97889494,+!p3@ZNF518A!1.10!21.65!ZNF518A;;chr8:81397820..81397836,+!p2@ZBTB10!1.10!14.73!ZBTB10;;chr7:28725715..28725727,+!p3@CREB5!1.10!13.68!CREB5;;chr17:38020392..38020477,-!p1@IKZF3!1.10!11.73!IKZF3;;chr1:59249645..59249656,-!p4@JUN!1.09!28.41!JUN;;chr8:80679993..80680011,-!p1@HEY1!1.09!16.39!HEY1;;chr7:27192185..27192209,-!p1@HOXA3!1.09!11.42!HOXA3;;chr16:29819403..29819442,+!p5@MAZ!1.08!90.65!MAZ;;chr16:29818160..29818188,+!p6@MAZ!1.08!52.16!MAZ;;chr16:30621615..30621660,-!p2@ZNF689!1.08!20.29!ZNF689;;chrX:148841186..148841193,+!p@chrX:148841186..148841193,+!1.08!10.97!HSFX1;;chr8:81397846..81397860,+!p3@ZBTB10!1.07!13.38!ZBTB10;;chr1:149858461..149858479,+!p1@BOLA1!1.06!4140.06!BOLA1;;chr19:21203481..21203504,+!p2@ZNF430!1.06!24.65!ZNF430;;chr7:64126535..64126559,+!p2@ZNF107!1.06!22.70!ZNF107;;chr2:176969228..176969260,+!p1@HOXD11!1.06!10.37!HOXD11;;chr19:45004556..45004581,-!p1@ZNF180!1.05!62.38!ZNF180;;chr19:21512115..21512135,-!p3@ZNF708!1.05!21.05!ZNF708;;chr10:104154246..104154347,+!p3@NFKB2!1.04!61.93!NFKB2;;chr19:45504688..45504782,+!p1@RELB!1.04!60.58!RELB;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.66!NFATC1;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!1.03!62.08!SNAPC4;;chr19:58694421..58694485,+!p1@ZNF274!1.03!52.46!ZNF274;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.63!ZNF680;;chr17:4890672..4890692,-!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| |expression_enrichment_score=chrX:84498989..84499003,+!p1@ZNF711!2.08!160.70!ZNF711;;chr12:8034651..8034657,+!p@chr12:8034651..8034657,+!1.92!82.68!NANOGP1;;chr7:28448965..28448994,+!p2@CREB5!1.71!171.37!CREB5;;chr15:76629123..76629151,+!p1@ISL2!1.68!51.41!ISL2;;chr2:172967621..172967637,-!p1@DLX2!1.59!97.86!DLX2;;chr8:81398682..81398697,+!p6@ZBTB10!1.55!45.40!ZBTB10;;chr7:28448995..28449011,+!p4@CREB5!1.54!46.75!CREB5;;chr1:935467..935484,-!p1@HES4!1.53!140.70!HES4;;chr19:23941647..23941672,-!p2@ZNF681!1.52!52.46!ZNF681;;chr7:28449026..28449037,+!p8@CREB5!1.50!30.67!CREB5;;chr1:212782094..212782109,+!p1@ATF3!1.49!776.72!ATF3;;chr22:21356345..21356367,-!p3@THAP7!1.48!38.93!THAP7;;chr6:20402102..20402152,+!p1@E2F3!1.47!113.49!E2F3;;chr11:615570..615721,-!p2@IRF7!1.47!55.47!IRF7;;chr1:227751231..227751273,+!p1@ZNF678!1.40!148.82!ZNF678;;chr7:27205136..27205164,-!p1@HOXA9!1.40!24.20!HOXA9;;chr17:46703942..46703964,-!p4@HOXB9!1.40!24.20!HOXB9;;chr6:19837592..19837621,+!p1@ID4!1.38!134.99!ID4;;chr11:615942..615957,-!p1@IRF7!1.37!204.74!IRF7;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.37!22.70!EN2;;chr17:46703687..46703740,-!p1@HOXB9!1.36!21.80!HOXB9;;chr21:34398234..34398250,+!p1@OLIG2!1.34!21.05!OLIG2;;chr5:172662197..172662216,-!p1@NKX2-5!1.34!20.89!NKX2-5;;chr7:99680302..99680329,-!p5@ZNF3!1.34!20.89!ZNF3;;chr17:46620898..46620927,-!p9@HOXB2!1.31!22.85!HOXB2;;chr10:124768217..124768228,-!p2@IKZF5!1.31!19.24!IKZF5;;chr17:8027418..8027432,-!p1@HES7!1.30!19.09!HES7;;chr20:42295713..42295738,+!p2@MYBL2!1.29!106.73!MYBL2;;chr1:935496..935509,-!p3@HES4!1.29!27.81!HES4;;chr7:28449015..28449024,+!p6@CREB5!1.28!18.04!CREB5;;chr19:23433144..23433204,-!p1@ZNF724P!1.26!76.82!ZNF724P;;chr19:33793430..33793447,-!p1@CEBPA!1.26!70.65!CEBPA;;chr15:76629007..76629012,+!p4@ISL2!1.26!17.29!ISL2;;chr6:90929475..90929486,-!p8@BACH2!1.26!17.14!BACH2;;chr6:44355499..44355514,+!p3@CDC5L!1.25!18.49!CDC5L;;chr6:56954867..56954882,+!p2@ZNF451!1.24!47.80!ZNF451;;chr12:108154309..108154359,-!p6@PRDM4!1.24!16.23!PRDM4;;chr6:126070769..126070801,+!p1@HEY2!1.23!18.19!HEY2;;chr2:223163706..223163730,-!p1@PAX3!1.23!16.08!PAX3;;chr6:90929463..90929474,-!p9@BACH2!1.22!15.63!BACH2;;chr19:21265028..21265052,+!p2@ZNF714!1.21!27.06!ZNF714;;chr19:11750566..11750627,+!p1@ZNF833P!1.21!20.59!ZNF833P;;chr5:43121586..43121601,+!p10@ZNF131!1.21!17.29!ZNF131;;chr19:21106081..21106115,+!p2@ZNF85!1.19!42.39!ZNF85;;chr2:122042770..122042785,-!p1@TFCP2L1!1.19!14.58!TFCP2L1;;chr7:35293685..35293718,-!p1@TBX20!1.18!14.28!TBX20;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.13!HOXC9;;chr5:134369905..134369972,-!p1@PITX1!1.16!20.44!PITX1;;chrX:84499081..84499115,+!p2@ZNF711!1.16!19.99!ZNF711;;chr1:91487774..91487802,-!p2@ZNF644!1.15!34.72!ZNF644;;chr1:227751287..227751298,+!p2@ZNF678!1.15!13.23!ZNF678;;chr7:64838786..64838809,+!p2@ZNF92!1.14!72.76!ZNF92;;chr7:27205106..27205134,-!p2@HOXA9!1.14!12.78!HOXA9;;chr17:46667594..46667619,-!p1@HOXB3!1.14!12.78!HOXB3;;chr1:91487836..91487854,-!p3@ZNF644!1.12!27.66!ZNF644;;chr17:4890649..4890664,-!p5@CAMTA2!1.12!12.33!CAMTA2;;chr19:21264991..21265026,+!p1@ZNF714!1.11!78.17!ZNF714;;chr2:200322654..200322707,-!p2@SATB2!1.11!17.29!SATB2;;chr3:40547564..40547616,+!p1@ZNF620!1.11!16.84!ZNF620;;chr10:8095593..8095625,+!p3@GATA3!1.11!13.83!GATA3;;chr14:37131058..37131139,+!p1@PAX9!1.11!12.03!PAX9;;chr20:42295745..42295765,+!p1@MYBL2!1.10!190.46!MYBL2;;chr10:104155480..104155534,+!p2@NFKB2!1.10!74.71!NFKB2;;chr19:22034809..22034878,-!p2@ZNF43!1.10!40.59!ZNF43;;chr19:21950332..21950356,-!p2@ZNF100!1.10!24.50!ZNF100;;chr19:24097706..24097731,+!p2@ZNF726!1.10!22.40!ZNF726;;chr10:97889464..97889494,+!p3@ZNF518A!1.10!21.65!ZNF518A;;chr8:81397820..81397836,+!p2@ZBTB10!1.10!14.73!ZBTB10;;chr7:28725715..28725727,+!p3@CREB5!1.10!13.68!CREB5;;chr17:38020392..38020477,-!p1@IKZF3!1.10!11.73!IKZF3;;chr1:59249645..59249656,-!p4@JUN!1.09!28.41!JUN;;chr8:80679993..80680011,-!p1@HEY1!1.09!16.39!HEY1;;chr7:27192185..27192209,-!p1@HOXA3!1.09!11.42!HOXA3;;chr16:29819403..29819442,+!p5@MAZ!1.08!90.65!MAZ;;chr16:29818160..29818188,+!p6@MAZ!1.08!52.16!MAZ;;chr16:30621615..30621660,-!p2@ZNF689!1.08!20.29!ZNF689;;chrX:148841186..148841193,+!p@chrX:148841186..148841193,+!1.08!10.97!HSFX1;;chr8:81397846..81397860,+!p3@ZBTB10!1.07!13.38!ZBTB10;;chr1:149858461..149858479,+!p1@BOLA1!1.06!4140.06!BOLA1;;chr19:21203481..21203504,+!p2@ZNF430!1.06!24.65!ZNF430;;chr7:64126535..64126559,+!p2@ZNF107!1.06!22.70!ZNF107;;chr2:176969228..176969260,+!p1@HOXD11!1.06!10.37!HOXD11;;chr19:45004556..45004581,-!p1@ZNF180!1.05!62.38!ZNF180;;chr19:21512115..21512135,-!p3@ZNF708!1.05!21.05!ZNF708;;chr10:104154246..104154347,+!p3@NFKB2!1.04!61.93!NFKB2;;chr19:45504688..45504782,+!p1@RELB!1.04!60.58!RELB;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.66!NFATC1;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!1.03!62.08!SNAPC4;;chr19:58694421..58694485,+!p1@ZNF274!1.03!52.46!ZNF274;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.63!ZNF680;;chr17:4890672..4890692,-!p3@CAMTA2!1.03!12.93!CAMTA2;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.62!PITX1;;chr1:935398..935465,-!p2@HES4!1.02!19.69!HES4;;chr16:30569801..30569845,-!p4@ZNF764!1.02!12.63!ZNF764;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.02!9.47!HOXC5;;chr1:45805872..45805900,+!p2@TOE1!1.01!22.70!TOE1;;chr19:20011775..20011800,+!p2@ZNF93!1.01!16.69!ZNF93;;chr16:30407021..30407061,+!p3@ZNF48!1.01!10.37!ZNF48;;chr17:46703826..46703845,-!p3@HOXB9!1.01!9.17!HOXB9;;chr7:97840743..97840786,+!p1@BHLHA15!1.01!9.17!BHLHA15;;chr1:120190786..120190915,-!p1@ZNF697!1.00!65.69!ZNF697;;chr12:133758115..133758138,+!p3@ZNF268!1.00!21.80!ZNF268;;chr20:45142154..45142227,-!p1@ZNF334!1.00!18.19!ZNF334;;chr6:20402070..20402082,+!p5@E2F3!1.00!10.52!E2F3;;chr5:170736243..170736279,+!p1@TLX3!1.00!9.02!TLX3;;chr7:64363682..64363692,+!p4@ZNF273!1.00!9.02!ZNF273;;chr8:11561684..11561751,+!p1@GATA4!1.00!9.02!GATA4;;chr16:3285119..3285133,-!p2@ZNF200!0.99!17.74!ZNF200;;chr16:85932760..85932775,+!p1@IRF8!0.99!8.87!IRF8;;chr1:92952473..92952489,-!p3@GFI1!0.99!8.72!GFI1;;chr6:126102254..126102289,+!p5@NCOA7!0.98!24.35!NCOA7;;chrX:77041657..77041668,-!p2@ATRX!0.98!17.44!ATRX;;chr17:46703436..46703460,-!p7@HOXB9!0.98!8.57!HOXB9;;chr19:24097675..24097699,+!p1@ZNF726!0.97!28.26!ZNF726;;chr12:10875351..10875422,-!p4@CSDA!0.97!16.54!CSDA;;chr1:63788229..63788250,+!p1@FOXD3!0.97!8.42!FOXD3;;chr2:73520667..73520683,-!p1@EGR4!0.97!8.42!EGR4;;chr3:27763807..27763822,-!p1@EOMES!0.97!8.42!EOMES;;chr1:59249688..59249703,-!p3@JUN!0.96!49.91!JUN;;chr12:80084737..80084763,-!p3@PAWR!0.96!31.27!PAWR;;chr4:4861385..4861398,+!p1@MSX1!0.96!24.50!MSX1;;chr19:47616992..47617011,-!p4@ZC3H4!0.96!17.74!ZC3H4;;chr2:71127699..71127744,+!p1@VAX2!0.96!16.99!VAX2;;chr7:148844581..148844606,+!p2@ZNF398!0.96!13.83!ZNF398;;chr11:62369084..62369093,-!p9@MTA2!0.96!8.12!MTA2;;chr7:28725740..28725778,+!p1@CREB5!0.95!73.51!CREB5;;chr9:35732647..35732678,+!p2@CREB3!0.95!45.40!CREB3;;chr16:54320101..54320125,-!p4@IRX3!0.95!11.42!IRX3;;chr11:6947720..6947812,+!p1@ZNF215!0.95!10.52!ZNF215;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.97!FOXA1;;chr14:29235961..29236008,+!p1@FOXG1!0.95!7.82!FOXG1;;chr9:129376201..129376225,+!p1@LMX1B!0.95!7.82!LMX1B;;chr2:42721205..42721307,+!p4@MTA3!0.94!7.67!MTA3;;chr20:39317868..39317884,-!p1@MAFB!0.93!91.70!MAFB;;chr6:44233252..44233296,-!p1@NFKBIE!0.93!76.97!NFKBIE;;chr10:96122645..96122675,-!p2@NOC3L!0.93!36.83!NOC3L;;chr5:76383133..76383186,-!p2@ZBED3!0.93!15.78!ZBED3;;chr6:31515311..31515330,+!p3@NFKBIL1!0.93!10.82!NFKBIL1;;chr19:33865166..33865182,+!p7@CEBPG!0.93!7.52!CEBPG;;chr21:38071403..38071428,+!p2@SIM2!0.93!7.52!SIM2;;chr5:137801160..137801176,+!p1@EGR1!0.92!763.34!EGR1;;chr8:81398444..81398472,+!p1@ZBTB10!0.92!30.97!ZBTB10;;chr7:64254834..64254854,+!p2@ZNF138!0.92!13.53!ZNF138;;chr18:55102598..55102623,+!p1@ONECUT2!0.92!7.37!ONECUT2;;chr19:1592714..1592762,-!p1@MBD3!0.91!56.52!MBD3;;chr6:126240442..126240459,+!p4@NCOA7!0.91!9.17!NCOA7;;chr21:34143971..34143983,-!p8@GCFC1!0.91!7.22!GCFC1;;chr2:176969179..176969226,+!p2@HOXD11!0.91!7.22!HOXD11;;chr2:88752207..88752218,-!p1@FOXI3!0.91!7.22!FOXI3;;chr19:50529247..50529296,+!p1@ZNF473!0.90!46.75!ZNF473;;chr17:41277372..41277418,-!p1@BRCA1!0.90!26.01!BRCA1;;chr19:58111241..58111292,+!p1@ZNF530!0.90!24.65!ZNF530;;chr17:4890695..4890773,-!p2@CAMTA2!0.90!22.70!CAMTA2;;chr8:22550982..22550999,-!p1@EGR3!0.90!20.44!EGR3;;chr21:34143999..34144016,-!p4@GCFC1!0.90!12.63!GCFC1;;chr19:54024251..54024305,+!p4@ZNF331!0.90!11.57!ZNF331;;chr16:30582888..30582923,-!p3@ZNF688!0.90!11.12!ZNF688;;chr19:22034784..22034801,-!p4@ZNF43!0.90!6.91!ZNF43;;chr3:169490834..169490863,+!p4@MYNN!0.90!6.91!MYNN;;chr11:19262461..19262476,-!p5@E2F8!0.90!6.91!E2F8;;chr6:126102292..126102329,+!p3@NCOA7!0.89!23.45!NCOA7;;chr19:23941680..23941704,-!p1@ZNF681!0.89!20.74!ZNF681;;chr17:79885537..79885554,-!p2@MAFG!0.89!13.53!MAFG;;chr7:27213893..27213954,-!p1@HOXA10!0.89!6.76!HOXA10;;chr2:237077022..237077038,-!p1@GBX2!0.89!6.76!GBX2;;chr19:57791328..57791377,+!p2@ZNF460!0.88!84.48!ZNF460;;chr19:44529479..44529542,+!p1@ZNF222,p1@ZNF284!0.88!30.22!ZNF222;;chr7:19157248..19157268,-!p1@TWIST1!0.88!19.24!TWIST1;;chr6:85473156..85473210,-!p2@TBX18!0.88!8.12!TBX18;;chr1:23694794..23694863,-!p1@ZNF436!0.87!23.00!ZNF436;;chr7:148581327..148581347,-!p2@EZH2!0.87!22.85!EZH2;;chr6:126240380..126240430,+!p2@NCOA7!0.87!17.44!NCOA7;;chr16:29818132..29818144,+!p12@MAZ!0.87!13.38!MAZ;;chr19:20150268..20150298,-!p2@ZNF682!0.87!12.48!ZNF682;;chr11:47270477..47270494,+!p4@NR1H3!0.87!9.47!NR1H3;;chr19:52531585..52531596,-!p2@ZNF614!0.87!8.42!ZNF614;;chr18:55102628..55102646,+!p2@ONECUT2!0.87!6.46!ONECUT2;;chr22:29196547..29196563,-!p2@XBP1!0.86!243.52!XBP1;;chr19:37569314..37569381,+!p1@ZNF420!0.86!23.75!ZNF420;;chr18:19749541..19749557,+!p1@GATA6!0.86!20.74!GATA6;;chr9:114287433..114287513,+!p1@ZNF483!0.86!17.14!ZNF483;;chr5:178287021..178287042,+!p2@ZNF354B!0.86!10.37!ZNF354B;;chr6:43337124..43337144,-!p4@ZNF318!0.86!9.17!ZNF318;;chr7:27224842.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| ||
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687 | |||
|fonse_cell_line=FF:0100067,FF:0100669 | |fonse_cell_line=FF:0100067,FF:0100669 | ||
|fonse_cell_line_closure=FF:0100067,FF:0100669 | |fonse_cell_line_closure=FF:0100067,FF:0100669 | ||
Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10451-106G1 | |id=FF:10451-106G1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100007 | ||
|is_obsolete= | |||
|library_id=CNhs11047 | |||
|library_id_phase_based=2:CNhs11047 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10451 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10451 | |||
|name=embryonic kidney cell line: HEK293/SLAM infection, 24hr | |name=embryonic kidney cell line: HEK293/SLAM infection, 24hr | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11047,LSID722,release008,COMPLETED | |profile_hcage=CNhs11047,LSID722,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.060819961675157,0,0.238183452548966,0.114159389744683,-0.0703623092662232,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0.114159389744683,0,-0.0391636206037447,0,0.0304099808375785,0,0.12171958778733,0,0.0162014934766254,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0209152492001353,0,0.060819961675157,0,0,0,0,0,0,0.0780204733570995,0,0,0,0,0,-0.0168139720127317,0,0.107478627697262,0,0,0.0643148832169747,0,0,0,0,0,0,0,0,0.060819961675157,0,0,0,0,0,0,0,0,-0.0353315387732309,0.060819961675157,0,0,0,0,0,-0.165556567175137,0.0304099808375785,0,0,0.116203437506004,-0.041188956768278,0,0,0.139598465090013,0,0.0161240385069765,-0.050987525090975,0,0,0,0.060819961675157,0,0.0304099808375785,0,0,0,0,0,0,0,0,0,0,0,0.180034168517451,0.279196930180025,0,0,-0.00793228640048019,0.134780589119764,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 78: | ||
|rna_weight_ug=8.109 | |rna_weight_ug=8.109 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=HEK293/SLAM | |sample_cell_line=HEK293/SLAM | ||
Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0044424;intracellular part;0!GO:0005622;intracellular;0!GO:0043231;intracellular membrane-bound organelle;5.73790623542819e-297!GO:0043227;membrane-bound organelle;5.89424510118049e-297!GO:0043226;organelle;6.0091159393086e-294!GO:0043229;intracellular organelle;1.82871352095155e-293!GO:0005634;nucleus;4.69949155865039e-191!GO:0044422;organelle part;5.24572592979331e-164!GO:0044446;intracellular organelle part;1.51730306823845e-162!GO:0005737;cytoplasm;2.81834342780714e-150!GO:0044237;cellular metabolic process;9.40369410932629e-149!GO:0043170;macromolecule metabolic process;4.16681521229944e-146!GO:0044238;primary metabolic process;2.75521640806534e-145!GO:0043283;biopolymer metabolic process;8.48172092254015e-119!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.15454147795221e-117!GO:0032991;macromolecular complex;4.31584606338707e-117!GO:0010467;gene expression;1.6005683817933e-109!GO:0044428;nuclear part;8.87355694850534e-109!GO:0030529;ribonucleoprotein complex;7.38902190091759e-104!GO:0003723;RNA binding;4.96957357087531e-100!GO:0003676;nucleic acid binding;8.77099343461593e-97!GO:0043233;organelle lumen;8.77099343461593e-97!GO:0031974;membrane-enclosed lumen;8.77099343461593e-97!GO:0044444;cytoplasmic part;4.82711690170699e-96!GO:0016070;RNA metabolic process;2.01731455992678e-72!GO:0006396;RNA processing;2.29041330280117e-72!GO:0031981;nuclear lumen;3.93340009115888e-69!GO:0005739;mitochondrion;4.91501631408274e-68!GO:0005515;protein binding;1.26128246524809e-62!GO:0005840;ribosome;8.73851651337049e-58!GO:0006412;translation;3.16274602002341e-57!GO:0043234;protein complex;7.85189208330964e-57!GO:0006259;DNA metabolic process;9.01597754460629e-56!GO:0003735;structural constituent of ribosome;1.09289521090046e-48!GO:0016043;cellular component organization and biogenesis;8.30918269258321e-48!GO:0043228;non-membrane-bound organelle;2.06631255891156e-47!GO:0043232;intracellular non-membrane-bound organelle;2.06631255891156e-47!GO:0016071;mRNA metabolic process;3.63153984360735e-47!GO:0008380;RNA splicing;5.85563773581036e-45!GO:0044249;cellular biosynthetic process;8.15319992264992e-44!GO:0019538;protein metabolic process;3.06837049433578e-43!GO:0007049;cell cycle;4.26683665524823e-43!GO:0006397;mRNA processing;1.88673848359674e-42!GO:0006996;organelle organization and biogenesis;2.41318114253494e-42!GO:0033279;ribosomal subunit;3.21914768001212e-42!GO:0015031;protein transport;2.4770581841285e-41!GO:0033036;macromolecule localization;2.5387419844495e-41!GO:0005654;nucleoplasm;1.21220836849623e-40!GO:0044429;mitochondrial part;1.21220836849623e-40!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.24737408765732e-40!GO:0009058;biosynthetic process;3.19692406856181e-40!GO:0000166;nucleotide binding;2.18378151367234e-39!GO:0044267;cellular protein metabolic process;2.36860256298466e-39!GO:0006974;response to DNA damage stimulus;4.27529365587334e-39!GO:0031967;organelle envelope;7.59288691127389e-39!GO:0031975;envelope;1.17727070313331e-38!GO:0044260;cellular macromolecule metabolic process;2.67905208415461e-38!GO:0031090;organelle membrane;1.17712935221377e-37!GO:0009059;macromolecule biosynthetic process;1.31502764297156e-37!GO:0008104;protein localization;4.77987806972265e-37!GO:0065003;macromolecular complex assembly;1.12702795599162e-36!GO:0045184;establishment of protein localization;2.93426380094455e-36!GO:0046907;intracellular transport;6.16654600557149e-36!GO:0022402;cell cycle process;1.03603725059224e-34!GO:0006281;DNA repair;1.37958839173302e-34!GO:0044451;nucleoplasm part;7.08668999600376e-33!GO:0022607;cellular component assembly;8.8780656226146e-33!GO:0005681;spliceosome;8.9187872321442e-33!GO:0005730;nucleolus;3.33269865123124e-32!GO:0005694;chromosome;2.39854139609305e-30!GO:0006886;intracellular protein transport;2.57039659647945e-30!GO:0005829;cytosol;4.96983742283e-30!GO:0000278;mitotic cell cycle;9.07867814131412e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.38440882799942e-29!GO:0032553;ribonucleotide binding;1.02368417415603e-28!GO:0032555;purine ribonucleotide binding;1.02368417415603e-28!GO:0017076;purine nucleotide binding;2.22448520339459e-27!GO:0019222;regulation of metabolic process;2.9938337209804e-27!GO:0016874;ligase activity;3.14173796616115e-27!GO:0006350;transcription;1.076802435172e-26!GO:0006260;DNA replication;1.81731111841904e-26!GO:0003677;DNA binding;3.55803307530579e-26!GO:0005524;ATP binding;9.0330823510625e-26!GO:0009719;response to endogenous stimulus;1.99360201569281e-25!GO:0044427;chromosomal part;2.33725075079696e-25!GO:0032559;adenyl ribonucleotide binding;2.51035237046533e-25!GO:0006512;ubiquitin cycle;2.68862132248732e-25!GO:0016462;pyrophosphatase activity;4.41237284283723e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.92958324829328e-25!GO:0050794;regulation of cellular process;6.74825641317809e-25!GO:0031323;regulation of cellular metabolic process;6.81351217931625e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;7.32665005693883e-25!GO:0051649;establishment of cellular localization;9.56047671141905e-25!GO:0019866;organelle inner membrane;1.18212394822875e-24!GO:0017111;nucleoside-triphosphatase activity;1.25967908107841e-24!GO:0022403;cell cycle phase;1.32747131788842e-24!GO:0000087;M phase of mitotic cell cycle;1.38557402367214e-24!GO:0007067;mitosis;2.58312900106245e-24!GO:0005740;mitochondrial envelope;4.67308594843891e-24!GO:0032774;RNA biosynthetic process;6.00638123972918e-24!GO:0051641;cellular localization;6.09969296846812e-24!GO:0030554;adenyl nucleotide binding;9.86280221758493e-24!GO:0006351;transcription, DNA-dependent;1.08508450416536e-23!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.93739216113027e-23!GO:0010468;regulation of gene expression;3.67268205730821e-23!GO:0051276;chromosome organization and biogenesis;3.8661089611355e-23!GO:0015934;large ribosomal subunit;8.56297493984169e-23!GO:0031966;mitochondrial membrane;9.44774286912577e-23!GO:0044445;cytosolic part;1.55303473919352e-22!GO:0005743;mitochondrial inner membrane;1.62058216272686e-22!GO:0000279;M phase;1.5789995274582e-21!GO:0042254;ribosome biogenesis and assembly;1.77996340923431e-21!GO:0031980;mitochondrial lumen;1.16367777312636e-20!GO:0005759;mitochondrial matrix;1.16367777312636e-20!GO:0004386;helicase activity;1.43660749213358e-20!GO:0045449;regulation of transcription;1.45650587251848e-20!GO:0015935;small ribosomal subunit;1.63122717319156e-20!GO:0006457;protein folding;2.42800448755122e-20!GO:0019941;modification-dependent protein catabolic process;2.55785698914538e-20!GO:0043632;modification-dependent macromolecule catabolic process;2.55785698914538e-20!GO:0006399;tRNA metabolic process;3.37342626443969e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;3.48285850386963e-20!GO:0051301;cell division;5.1682230334735e-20!GO:0006511;ubiquitin-dependent protein catabolic process;7.06679898384849e-20!GO:0006355;regulation of transcription, DNA-dependent;1.38557517184286e-19!GO:0044257;cellular protein catabolic process;1.47877414256872e-19!GO:0022618;protein-RNA complex assembly;1.54891146421147e-19!GO:0006119;oxidative phosphorylation;2.23771421737624e-19!GO:0008134;transcription factor binding;8.15625151236085e-19!GO:0044265;cellular macromolecule catabolic process;1.08393229734737e-18!GO:0044455;mitochondrial membrane part;2.50924671862894e-18!GO:0006366;transcription from RNA polymerase II promoter;4.58307004010591e-18!GO:0051726;regulation of cell cycle;4.71848339102721e-18!GO:0031965;nuclear membrane;9.61058292559206e-18!GO:0000074;regulation of progression through cell cycle;1.02873966509641e-17!GO:0006605;protein targeting;1.36957325452271e-17!GO:0050789;regulation of biological process;1.38533228187559e-17!GO:0044453;nuclear membrane part;1.65168921310281e-17!GO:0016887;ATPase activity;1.74756018756084e-17!GO:0043285;biopolymer catabolic process;1.77731365144035e-17!GO:0042623;ATPase activity, coupled;2.03681507541796e-17!GO:0005761;mitochondrial ribosome;4.07641006109765e-17!GO:0000313;organellar ribosome;4.07641006109765e-17!GO:0043412;biopolymer modification;5.01394387367434e-17!GO:0016604;nuclear body;1.02727181140053e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;1.11933394199429e-16!GO:0008026;ATP-dependent helicase activity;1.35516479521946e-16!GO:0005643;nuclear pore;2.43772562263094e-16!GO:0008135;translation factor activity, nucleic acid binding;3.87389715189842e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;5.52845989512603e-16!GO:0000375;RNA splicing, via transesterification reactions;5.52845989512603e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.52845989512603e-16!GO:0006323;DNA packaging;5.84165934909743e-16!GO:0030163;protein catabolic process;1.08402822380592e-15!GO:0005635;nuclear envelope;2.20515819051689e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.92254577610887e-15!GO:0009057;macromolecule catabolic process;8.50781779963225e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.07180385476653e-14!GO:0015630;microtubule cytoskeleton;1.20936555763109e-14!GO:0006913;nucleocytoplasmic transport;1.6346265167006e-14!GO:0006364;rRNA processing;2.19077515505574e-14!GO:0016072;rRNA metabolic process;2.77645695370086e-14!GO:0051082;unfolded protein binding;2.87379902164312e-14!GO:0065004;protein-DNA complex assembly;3.47571184838072e-14!GO:0051169;nuclear transport;4.3330817253134e-14!GO:0043687;post-translational protein modification;4.60834640517297e-14!GO:0006464;protein modification process;6.87048014898706e-14!GO:0005746;mitochondrial respiratory chain;7.31510587547401e-14!GO:0012505;endomembrane system;2.10327889530455e-13!GO:0006403;RNA localization;4.01863473739981e-13!GO:0050657;nucleic acid transport;4.33575552561866e-13!GO:0051236;establishment of RNA localization;4.33575552561866e-13!GO:0050658;RNA transport;4.33575552561866e-13!GO:0006333;chromatin assembly or disassembly;5.07060996965595e-13!GO:0000785;chromatin;6.37622403095672e-13!GO:0051186;cofactor metabolic process;6.86880655067521e-13!GO:0065002;intracellular protein transport across a membrane;6.96524615066421e-13!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.33669769220681e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.02554253955652e-12!GO:0044248;cellular catabolic process;1.17764375922478e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.19274426435434e-12!GO:0003954;NADH dehydrogenase activity;1.19274426435434e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19274426435434e-12!GO:0016607;nuclear speck;1.25987073209997e-12!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.30130549088998e-12!GO:0004812;aminoacyl-tRNA ligase activity;1.30130549088998e-12!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.30130549088998e-12!GO:0046930;pore complex;1.46385065938121e-12!GO:0008639;small protein conjugating enzyme activity;1.87767934902101e-12!GO:0003743;translation initiation factor activity;2.0126779058021e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.22663890400067e-12!GO:0006261;DNA-dependent DNA replication;3.41741086835525e-12!GO:0004842;ubiquitin-protein ligase activity;3.78144473484892e-12!GO:0017038;protein import;4.23751742894812e-12!GO:0043038;amino acid activation;5.68170458465412e-12!GO:0006418;tRNA aminoacylation for protein translation;5.68170458465412e-12!GO:0043039;tRNA aminoacylation;5.68170458465412e-12!GO:0019787;small conjugating protein ligase activity;7.72443657258066e-12!GO:0016779;nucleotidyltransferase activity;1.26795316957683e-11!GO:0006413;translational initiation;2.21026365506312e-11!GO:0003712;transcription cofactor activity;2.26498037642844e-11!GO:0008565;protein transporter activity;2.28124517018869e-11!GO:0006732;coenzyme metabolic process;2.84014773790652e-11!GO:0006446;regulation of translational initiation;3.55420191070629e-11!GO:0051028;mRNA transport;4.25969500442501e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.72712953533361e-11!GO:0042773;ATP synthesis coupled electron transport;4.72712953533361e-11!GO:0030964;NADH dehydrogenase complex (quinone);7.48896990948956e-11!GO:0045271;respiratory chain complex I;7.48896990948956e-11!GO:0005747;mitochondrial respiratory chain complex I;7.48896990948956e-11!GO:0008270;zinc ion binding;8.68708953052644e-11!GO:0031497;chromatin assembly;9.59638968878418e-11!GO:0016881;acid-amino acid ligase activity;1.37818144139104e-10!GO:0048193;Golgi vesicle transport;1.41702271348362e-10!GO:0006334;nucleosome assembly;2.19214969784683e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.30169564751668e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.63629219779176e-10!GO:0065007;biological regulation;3.59563151763241e-10!GO:0043566;structure-specific DNA binding;3.98021465696952e-10!GO:0005813;centrosome;7.92409321908681e-10!GO:0000775;chromosome, pericentric region;8.91897399241446e-10!GO:0009259;ribonucleotide metabolic process;9.65736166309437e-10!GO:0006163;purine nucleotide metabolic process;1.10167936901747e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.31033460805177e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.45721934203592e-09!GO:0008033;tRNA processing;1.60626815159287e-09!GO:0031324;negative regulation of cellular metabolic process;1.91096835737619e-09!GO:0016568;chromatin modification;2.01422974191838e-09!GO:0051188;cofactor biosynthetic process;2.12173481529419e-09!GO:0012501;programmed cell death;2.12776977131033e-09!GO:0006915;apoptosis;2.38391654002339e-09!GO:0005815;microtubule organizing center;2.75156267344808e-09!GO:0005819;spindle;3.38916630360286e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.79519630705008e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.59164705873056e-09!GO:0016740;transferase activity;4.89651089654667e-09!GO:0044432;endoplasmic reticulum part;5.45895270177868e-09!GO:0006461;protein complex assembly;5.86484183796692e-09!GO:0006164;purine nucleotide biosynthetic process;7.68036126231514e-09!GO:0051329;interphase of mitotic cell cycle;7.69382292381605e-09!GO:0005667;transcription factor complex;8.01914583718984e-09!GO:0016564;transcription repressor activity;8.93492946404801e-09!GO:0048770;pigment granule;1.12857398645597e-08!GO:0042470;melanosome;1.12857398645597e-08!GO:0009150;purine ribonucleotide metabolic process;1.27044354682082e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.43705033613957e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.5737033325603e-08!GO:0005783;endoplasmic reticulum;1.62320620051481e-08!GO:0009260;ribonucleotide biosynthetic process;1.82591853724031e-08!GO:0000075;cell cycle checkpoint;2.38095858409752e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.82319983963409e-08!GO:0043623;cellular protein complex assembly;3.54991195493942e-08!GO:0007005;mitochondrion organization and biogenesis;3.72564493533419e-08!GO:0009108;coenzyme biosynthetic process;3.74060648973107e-08!GO:0051325;interphase;4.01827610337547e-08!GO:0046914;transition metal ion binding;4.37468010932578e-08!GO:0008094;DNA-dependent ATPase activity;4.70223287411282e-08!GO:0003697;single-stranded DNA binding;5.49470180343615e-08!GO:0008219;cell death;6.53753781404167e-08!GO:0016265;death;6.53753781404167e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.01581083845105e-08!GO:0048523;negative regulation of cellular process;8.42697709928263e-08!GO:0009892;negative regulation of metabolic process;8.53742387882526e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.65216656273562e-08!GO:0009152;purine ribonucleotide biosynthetic process;8.81474899756942e-08!GO:0015986;ATP synthesis coupled proton transport;9.11702719302718e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.11702719302718e-08!GO:0005794;Golgi apparatus;1.11957145382849e-07!GO:0003899;DNA-directed RNA polymerase activity;1.28085571811531e-07!GO:0009141;nucleoside triphosphate metabolic process;1.3016862376141e-07!GO:0000245;spliceosome assembly;1.35429162489109e-07!GO:0051170;nuclear import;1.45834706292596e-07!GO:0006606;protein import into nucleus;1.49604211794536e-07!GO:0016563;transcription activator activity;1.59013748301668e-07!GO:0003724;RNA helicase activity;1.78951550795577e-07!GO:0051427;hormone receptor binding;1.84956523137885e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.92540828822612e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.92540828822612e-07!GO:0009055;electron carrier activity;2.04616032612493e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.14034353020362e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.14034353020362e-07!GO:0032446;protein modification by small protein conjugation;2.14933554235941e-07!GO:0006302;double-strand break repair;2.1960286021856e-07!GO:0045786;negative regulation of progression through cell cycle;2.37771761148212e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.93697788797389e-07!GO:0016567;protein ubiquitination;3.08452571932554e-07!GO:0007051;spindle organization and biogenesis;3.22386146917672e-07!GO:0005657;replication fork;3.77640208802105e-07!GO:0044452;nucleolar part;4.50236902545871e-07!GO:0035257;nuclear hormone receptor binding;4.68434524591307e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.94185222509021e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.94185222509021e-07!GO:0016192;vesicle-mediated transport;5.49263252419091e-07!GO:0005762;mitochondrial large ribosomal subunit;5.70252022043228e-07!GO:0000315;organellar large ribosomal subunit;5.70252022043228e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.08129319130322e-07!GO:0016363;nuclear matrix;6.46202513048297e-07!GO:0006793;phosphorus metabolic process;6.462964398507e-07!GO:0006796;phosphate metabolic process;6.462964398507e-07!GO:0004527;exonuclease activity;6.96683246355715e-07!GO:0051052;regulation of DNA metabolic process;7.47196035346415e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.47196035346415e-07!GO:0000079;regulation of cyclin-dependent protein kinase activity;7.62820713308266e-07!GO:0016481;negative regulation of transcription;8.05175966944632e-07!GO:0006310;DNA recombination;8.44934574729508e-07!GO:0003714;transcription corepressor activity;9.2186163493725e-07!GO:0009117;nucleotide metabolic process;1.0180445552866e-06!GO:0006752;group transfer coenzyme metabolic process;1.0195663956162e-06!GO:0042981;regulation of apoptosis;1.0195663956162e-06!GO:0003678;DNA helicase activity;1.11984853188898e-06!GO:0005789;endoplasmic reticulum membrane;1.24482209965643e-06!GO:0005768;endosome;1.2680275486477e-06!GO:0046034;ATP metabolic process;1.39301150092479e-06!GO:0016741;transferase activity, transferring one-carbon groups;1.46975811709658e-06!GO:0009056;catabolic process;1.51144810134169e-06!GO:0043067;regulation of programmed cell death;1.62163642368219e-06!GO:0008168;methyltransferase activity;1.71442241507271e-06!GO:0005874;microtubule;1.72549038159418e-06!GO:0008654;phospholipid biosynthetic process;1.75444912427599e-06!GO:0019829;cation-transporting ATPase activity;1.85814882838152e-06!GO:0006754;ATP biosynthetic process;3.16065907450433e-06!GO:0006753;nucleoside phosphate metabolic process;3.16065907450433e-06!GO:0007088;regulation of mitosis;3.73636521477188e-06!GO:0003690;double-stranded DNA binding;4.17091999441039e-06!GO:0051168;nuclear export;4.41585476079955e-06!GO:0000049;tRNA binding;4.67070327310026e-06!GO:0048519;negative regulation of biological process;4.7413648208312e-06!GO:0007017;microtubule-based process;5.1743299677395e-06!GO:0003684;damaged DNA binding;6.14214451225476e-06!GO:0000786;nucleosome;6.24129591356797e-06!GO:0045259;proton-transporting ATP synthase complex;7.07959135256841e-06!GO:0004518;nuclease activity;7.09841609241882e-06!GO:0016310;phosphorylation;7.79139425452167e-06!GO:0005793;ER-Golgi intermediate compartment;1.01597386424674e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.04456206982765e-05!GO:0003682;chromatin binding;1.05272032612779e-05!GO:0000059;protein import into nucleus, docking;1.05895791406821e-05!GO:0003713;transcription coactivator activity;1.11839000181761e-05!GO:0008186;RNA-dependent ATPase activity;1.15313461927933e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.23592908125463e-05!GO:0009060;aerobic respiration;1.55977554367593e-05!GO:0006383;transcription from RNA polymerase III promoter;1.59329739681049e-05!GO:0006916;anti-apoptosis;1.84332750721538e-05!GO:0016853;isomerase activity;2.22154844601686e-05!GO:0005525;GTP binding;2.47834220303924e-05!GO:0030880;RNA polymerase complex;2.70577854544821e-05!GO:0000151;ubiquitin ligase complex;2.82673901968633e-05!GO:0007059;chromosome segregation;2.82673901968633e-05!GO:0045333;cellular respiration;3.24492567790475e-05!GO:0045892;negative regulation of transcription, DNA-dependent;3.28618922283953e-05!GO:0048475;coated membrane;3.53976887981037e-05!GO:0030117;membrane coat;3.53976887981037e-05!GO:0004004;ATP-dependent RNA helicase activity;3.71086901510701e-05!GO:0006888;ER to Golgi vesicle-mediated transport;3.88051931243606e-05!GO:0019783;small conjugating protein-specific protease activity;4.28087389650999e-05!GO:0043069;negative regulation of programmed cell death;4.90421725967691e-05!GO:0051246;regulation of protein metabolic process;5.12729853551805e-05!GO:0006352;transcription initiation;5.31744488566397e-05!GO:0045941;positive regulation of transcription;5.31744488566397e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.48117691663535e-05!GO:0004674;protein serine/threonine kinase activity;5.56474106848117e-05!GO:0004843;ubiquitin-specific protease activity;5.56661877006507e-05!GO:0043021;ribonucleoprotein binding;5.9181227532083e-05!GO:0043066;negative regulation of apoptosis;6.01479448887048e-05!GO:0044440;endosomal part;6.37193214564007e-05!GO:0010008;endosome membrane;6.37193214564007e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;6.61822254891805e-05!GO:0016859;cis-trans isomerase activity;6.77787735807774e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.82987903272707e-05!GO:0055029;nuclear DNA-directed RNA polymerase complex;7.66670450854352e-05!GO:0000428;DNA-directed RNA polymerase complex;7.66670450854352e-05!GO:0032200;telomere organization and biogenesis;7.70858193922908e-05!GO:0000723;telomere maintenance;7.70858193922908e-05!GO:0006099;tricarboxylic acid cycle;8.82386475227269e-05!GO:0046356;acetyl-CoA catabolic process;8.82386475227269e-05!GO:0000314;organellar small ribosomal subunit;9.06101372188198e-05!GO:0005763;mitochondrial small ribosomal subunit;9.06101372188198e-05!GO:0005839;proteasome core complex (sensu Eukaryota);9.08179553908566e-05!GO:0006414;translational elongation;9.89048495690835e-05!GO:0006626;protein targeting to mitochondrion;0.000102804815506025!GO:0007093;mitotic cell cycle checkpoint;0.000102804815506025!GO:0016787;hydrolase activity;0.000105967432970405!GO:0030120;vesicle coat;0.000113708669279522!GO:0030662;coated vesicle membrane;0.000113708669279522!GO:0006084;acetyl-CoA metabolic process;0.000114121952761297!GO:0003702;RNA polymerase II transcription factor activity;0.000114424606994165!GO:0007052;mitotic spindle organization and biogenesis;0.000115855623299264!GO:0032508;DNA duplex unwinding;0.000120654508077903!GO:0032392;DNA geometric change;0.000120654508077903!GO:0005770;late endosome;0.00013257564251484!GO:0004221;ubiquitin thiolesterase activity;0.000135006771291184!GO:0000776;kinetochore;0.000146569868270641!GO:0006613;cotranslational protein targeting to membrane;0.00015874920364809!GO:0003924;GTPase activity;0.000168010419158052!GO:0043681;protein import into mitochondrion;0.000175793452136145!GO:0042770;DNA damage response, signal transduction;0.000191870639849421!GO:0046489;phosphoinositide biosynthetic process;0.000205506211580739!GO:0009451;RNA modification;0.00020785582422194!GO:0031570;DNA integrity checkpoint;0.000238216142785278!GO:0032561;guanyl ribonucleotide binding;0.000241305373605936!GO:0019001;guanyl nucleotide binding;0.000241305373605936!GO:0048471;perinuclear region of cytoplasm;0.000245588059949023!GO:0006275;regulation of DNA replication;0.000252900288989376!GO:0015631;tubulin binding;0.000258171102143826!GO:0006401;RNA catabolic process;0.000272047358014994!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000282973674461236!GO:0046474;glycerophospholipid biosynthetic process;0.000286746660068657!GO:0045893;positive regulation of transcription, DNA-dependent;0.000333670507597319!GO:0000781;chromosome, telomeric region;0.000343236214803929!GO:0006402;mRNA catabolic process;0.000356049283885443!GO:0004298;threonine endopeptidase activity;0.000356304514071768!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000374984495646517!GO:0006839;mitochondrial transport;0.000377551549155019!GO:0006289;nucleotide-excision repair;0.00041427766392645!GO:0006520;amino acid metabolic process;0.000415316123658783!GO:0051053;negative regulation of DNA metabolic process;0.000428042531053342!GO:0032259;methylation;0.000432120565481224!GO:0003729;mRNA binding;0.00046468114399939!GO:0005048;signal sequence binding;0.000478162169693397!GO:0009109;coenzyme catabolic process;0.000483298113876541!GO:0006268;DNA unwinding during replication;0.000515706998515452!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000538637164766161!GO:0006611;protein export from nucleus;0.000572656424134619!GO:0046467;membrane lipid biosynthetic process;0.000577085440762853!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000577968744171079!GO:0009165;nucleotide biosynthetic process;0.000609992138970276!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000635070602084025!GO:0040029;regulation of gene expression, epigenetic;0.000636356414522441!GO:0004532;exoribonuclease activity;0.000680894710742388!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.000680894710742388!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000681928082780953!GO:0006400;tRNA modification;0.000704641846539368!GO:0016790;thiolester hydrolase activity;0.000816168096241527!GO:0005769;early endosome;0.000841437801626046!GO:0051187;cofactor catabolic process;0.000847158984779719!GO:0008408;3'-5' exonuclease activity;0.00086979084005929!GO:0007050;cell cycle arrest;0.000896228144078605!GO:0045454;cell redox homeostasis;0.000901723198557021!GO:0035258;steroid hormone receptor binding;0.000904432506910395!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.000939162565851191!GO:0051920;peroxiredoxin activity;0.000942285528037575!GO:0006270;DNA replication initiation;0.000960344789519793!GO:0000922;spindle pole;0.000995010490286679!GO:0000228;nuclear chromosome;0.00100876320782154!GO:0006612;protein targeting to membrane;0.00103963614422327!GO:0046966;thyroid hormone receptor binding;0.00105686880712634!GO:0005798;Golgi-associated vesicle;0.0011541394380086!GO:0007006;mitochondrial membrane organization and biogenesis;0.00115505137959654!GO:0006405;RNA export from nucleus;0.00116153868802526!GO:0008022;protein C-terminus binding;0.00121368358965803!GO:0051087;chaperone binding;0.00121451576540096!GO:0005684;U2-dependent spliceosome;0.00123988001488123!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00132030036618969!GO:0008139;nuclear localization sequence binding;0.00132781826452534!GO:0000086;G2/M transition of mitotic cell cycle;0.00133943646285685!GO:0000082;G1/S transition of mitotic cell cycle;0.00138874192144278!GO:0006284;base-excision repair;0.00155925717837693!GO:0019899;enzyme binding;0.00155925717837693!GO:0005788;endoplasmic reticulum lumen;0.00160230879802096!GO:0007004;telomere maintenance via telomerase;0.00160748271369153!GO:0003711;transcription elongation regulator activity;0.00162847563452505!GO:0004003;ATP-dependent DNA helicase activity;0.00165873389089626!GO:0000077;DNA damage checkpoint;0.00166004133200893!GO:0006730;one-carbon compound metabolic process;0.00166004133200893!GO:0043414;biopolymer methylation;0.00170813041383047!GO:0030867;rough endoplasmic reticulum membrane;0.00174971227866581!GO:0000178;exosome (RNase complex);0.00199075076388824!GO:0000792;heterochromatin;0.0020477569711719!GO:0000725;recombinational repair;0.00212379778036885!GO:0000724;double-strand break repair via homologous recombination;0.00212379778036885!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00217413546783378!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00220914360517573!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00220914360517573!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00220914360517573!GO:0030521;androgen receptor signaling pathway;0.00226720076191748!GO:0048487;beta-tubulin binding;0.00230589165055574!GO:0016251;general RNA polymerase II transcription factor activity;0.00232487776969007!GO:0005876;spindle microtubule;0.00237972007928398!GO:0000096;sulfur amino acid metabolic process;0.00262230361805639!GO:0008250;oligosaccharyl transferase complex;0.00262230361805639!GO:0000209;protein polyubiquitination;0.00273207161109851!GO:0051789;response to protein stimulus;0.00278246359720604!GO:0006986;response to unfolded protein;0.00278246359720604!GO:0008156;negative regulation of DNA replication;0.00284756662706394!GO:0005637;nuclear inner membrane;0.0028519818912702!GO:0044450;microtubule organizing center part;0.00303604886382006!GO:0000175;3'-5'-exoribonuclease activity;0.00322284535109454!GO:0000819;sister chromatid segregation;0.00322885593846867!GO:0006144;purine base metabolic process;0.00327412956344532!GO:0051540;metal cluster binding;0.00328975070443919!GO:0051536;iron-sulfur cluster binding;0.00328975070443919!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00330569270909654!GO:0000097;sulfur amino acid biosynthetic process;0.00330569270909654!GO:0009116;nucleoside metabolic process;0.00343374118870558!GO:0043596;nuclear replication fork;0.00347456466231746!GO:0048500;signal recognition particle;0.00352854654252526!GO:0006891;intra-Golgi vesicle-mediated transport;0.00356768056297843!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00357620665472852!GO:0005669;transcription factor TFIID complex;0.00375838469854119!GO:0042393;histone binding;0.00385832889730859!GO:0008652;amino acid biosynthetic process;0.00390787470046637!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0039556527422691!GO:0006278;RNA-dependent DNA replication;0.00403497999536323!GO:0008017;microtubule binding;0.00419993902005008!GO:0008312;7S RNA binding;0.00426565577597201!GO:0019843;rRNA binding;0.00426918959070295!GO:0051059;NF-kappaB binding;0.0043239490111082!GO:0007010;cytoskeleton organization and biogenesis;0.00433105933900748!GO:0003887;DNA-directed DNA polymerase activity;0.0043840496552111!GO:0044431;Golgi apparatus part;0.00443514837734543!GO:0030118;clathrin coat;0.00452207181359635!GO:0000070;mitotic sister chromatid segregation;0.00453711568870046!GO:0031072;heat shock protein binding;0.00455329273492848!GO:0051252;regulation of RNA metabolic process;0.0047104101715495!GO:0016272;prefoldin complex;0.00475111634820164!GO:0006506;GPI anchor biosynthetic process;0.00494438187219416!GO:0001824;blastocyst development;0.00496245072592043!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00509569821238844!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00527446449056092!GO:0015399;primary active transmembrane transporter activity;0.00527446449056092!GO:0016584;nucleosome positioning;0.00547560675795428!GO:0007021;tubulin folding;0.00581880996295249!GO:0004576;oligosaccharyl transferase activity;0.00586680465922173!GO:0006505;GPI anchor metabolic process;0.00628226069200032!GO:0046983;protein dimerization activity;0.00639693134955346!GO:0018196;peptidyl-asparagine modification;0.00639693134955346!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00639693134955346!GO:0005732;small nucleolar ribonucleoprotein complex;0.00692782197326955!GO:0005832;chaperonin-containing T-complex;0.00709488657611078!GO:0006497;protein amino acid lipidation;0.00713224393292396!GO:0031124;mRNA 3'-end processing;0.0071574247157263!GO:0003746;translation elongation factor activity;0.00730750616587635!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00736092832776883!GO:0008632;apoptotic program;0.00737249698802929!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0076376167526409!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00769590463755403!GO:0009112;nucleobase metabolic process;0.00781565653947378!GO:0033673;negative regulation of kinase activity;0.00781565653947378!GO:0006469;negative regulation of protein kinase activity;0.00781565653947378!GO:0006595;polyamine metabolic process;0.00809360446573188!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00811192093770606!GO:0043065;positive regulation of apoptosis;0.00831039259534355!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00845111727502406!GO:0000152;nuclear ubiquitin ligase complex;0.00883079865517932!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00888428256051902!GO:0043022;ribosome binding;0.00896917166365708!GO:0008173;RNA methyltransferase activity;0.00913739880474362!GO:0006376;mRNA splice site selection;0.00931000151561916!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00931000151561916!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00939404103368492!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00939829086928459!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00962084618675403!GO:0048522;positive regulation of cellular process;0.00963498053998438!GO:0045045;secretory pathway;0.00977313014843541!GO:0006650;glycerophospholipid metabolic process;0.00978253796033338!GO:0006338;chromatin remodeling;0.00990135958489172!GO:0046483;heterocycle metabolic process;0.0101179357579098!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0101669118446804!GO:0016407;acetyltransferase activity;0.0101713649000467!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0103589659335654!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0103589659335654!GO:0030384;phosphoinositide metabolic process;0.0104322469641015!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0107078841089717!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0107078841089717!GO:0045047;protein targeting to ER;0.0107078841089717!GO:0046426;negative regulation of JAK-STAT cascade;0.0107470044884853!GO:0033116;ER-Golgi intermediate compartment membrane;0.0107560215602735!GO:0042802;identical protein binding;0.0107629088380001!GO:0051539;4 iron, 4 sulfur cluster binding;0.0107866603523475!GO:0006519;amino acid and derivative metabolic process;0.010978073844605!GO:0008180;signalosome;0.0111966054749019!GO:0031252;leading edge;0.0113182137945829!GO:0032507;maintenance of cellular protein localization;0.0116038934414906!GO:0031902;late endosome membrane;0.0116287597657943!GO:0043068;positive regulation of programmed cell death;0.0119269413884618!GO:0008234;cysteine-type peptidase activity;0.0121227796600904!GO:0051348;negative regulation of transferase activity;0.0121596267348567!GO:0050681;androgen receptor binding;0.0122381896495553!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0123407056528334!GO:0000910;cytokinesis;0.0124196841510238!GO:0009396;folic acid and derivative biosynthetic process;0.0129420568877699!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0131497047959605!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0132615879226603!GO:0065009;regulation of a molecular function;0.0134801301431642!GO:0031577;spindle checkpoint;0.0137495577542841!GO:0008287;protein serine/threonine phosphatase complex;0.013771137867231!GO:0001522;pseudouridine synthesis;0.0139291852165795!GO:0030518;steroid hormone receptor signaling pathway;0.0142732399282323!GO:0000018;regulation of DNA recombination;0.0143074670743568!GO:0043130;ubiquitin binding;0.014590666015473!GO:0032182;small conjugating protein binding;0.014590666015473!GO:0006406;mRNA export from nucleus;0.0146821081032388!GO:0043601;nuclear replisome;0.0147868582288148!GO:0030894;replisome;0.0147868582288148!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0148092589608801!GO:0009615;response to virus;0.0150550156551058!GO:0003725;double-stranded RNA binding;0.0150846345130327!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0151480398191535!GO:0000930;gamma-tubulin complex;0.0152021103365226!GO:0008610;lipid biosynthetic process;0.0152691699159237!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0152854418310628!GO:0031123;RNA 3'-end processing;0.0154805697439937!GO:0044454;nuclear chromosome part;0.0154805697439937!GO:0008276;protein methyltransferase activity;0.0154960617167997!GO:0046982;protein heterodimerization activity;0.0162964585171972!GO:0009303;rRNA transcription;0.0164506777515093!GO:0005869;dynactin complex;0.0165529957385161!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0165529957385161!GO:0055083;monovalent inorganic anion homeostasis;0.0165529957385161!GO:0055064;chloride ion homeostasis;0.0165529957385161!GO:0030644;cellular chloride ion homeostasis;0.0165529957385161!GO:0006541;glutamine metabolic process;0.0166781040698874!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0166781040698874!GO:0010257;NADH dehydrogenase complex assembly;0.0166781040698874!GO:0033108;mitochondrial respiratory chain complex assembly;0.0166781040698874!GO:0016126;sterol biosynthetic process;0.016725555311814!GO:0006417;regulation of translation;0.0171399000627114!GO:0007346;regulation of progression through mitotic cell cycle;0.0175344761608669!GO:0005666;DNA-directed RNA polymerase III complex;0.0175433631589593!GO:0030132;clathrin coat of coated pit;0.0175922068431866!GO:0007243;protein kinase cascade;0.017801017425624!GO:0042158;lipoprotein biosynthetic process;0.0181264622055092!GO:0030176;integral to endoplasmic reticulum membrane;0.0181447996135245!GO:0016197;endosome transport;0.0188324824523199!GO:0006220;pyrimidine nucleotide metabolic process;0.0189068666544527!GO:0005680;anaphase-promoting complex;0.0189167225999321!GO:0045936;negative regulation of phosphate metabolic process;0.0190706889532988!GO:0031982;vesicle;0.0192134408154034!GO:0016579;protein deubiquitination;0.0195756444205945!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0196220498060521!GO:0005905;coated pit;0.0199211979356661!GO:0005663;DNA replication factor C complex;0.0200998471276981!GO:0004680;casein kinase activity;0.0214596707260857!GO:0008538;proteasome activator activity;0.0216602315500662!GO:0000726;non-recombinational repair;0.0218077938195345!GO:0004523;ribonuclease H activity;0.0221589448817348!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0222450816597416!GO:0045039;protein import into mitochondrial inner membrane;0.0222450816597416!GO:0031901;early endosome membrane;0.0223870288168801!GO:0051297;centrosome organization and biogenesis;0.0225161358114519!GO:0031023;microtubule organizing center organization and biogenesis;0.0225161358114519!GO:0017056;structural constituent of nuclear pore;0.0228509678187879!GO:0009124;nucleoside monophosphate biosynthetic process;0.0228871222104086!GO:0009123;nucleoside monophosphate metabolic process;0.0228871222104086!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.023110083102207!GO:0015002;heme-copper terminal oxidase activity;0.023110083102207!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.023110083102207!GO:0004129;cytochrome-c oxidase activity;0.023110083102207!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0235288546851851!GO:0030658;transport vesicle membrane;0.0236982196563297!GO:0031968;organelle outer membrane;0.024030342299852!GO:0007018;microtubule-based movement;0.0240434962699094!GO:0006607;NLS-bearing substrate import into nucleus;0.0242347900393575!GO:0019867;outer membrane;0.0243214001644189!GO:0042326;negative regulation of phosphorylation;0.0243935691969506!GO:0005658;alpha DNA polymerase:primase complex;0.0247513599517762!GO:0046128;purine ribonucleoside metabolic process;0.0247513599517762!GO:0042278;purine nucleoside metabolic process;0.0247513599517762!GO:0004540;ribonuclease activity;0.0248966873444416!GO:0016408;C-acyltransferase activity;0.0249027074712713!GO:0016417;S-acyltransferase activity;0.0249534482439498!GO:0009070;serine family amino acid biosynthetic process;0.0249534482439498!GO:0019887;protein kinase regulator activity;0.0251945495027449!GO:0031410;cytoplasmic vesicle;0.0251959395544038!GO:0001832;blastocyst growth;0.0253289465790607!GO:0043284;biopolymer biosynthetic process;0.0253289465790607!GO:0015980;energy derivation by oxidation of organic compounds;0.0255297450195094!GO:0008536;Ran GTPase binding;0.0258920724500033!GO:0007098;centrosome cycle;0.0260939823905778!GO:0005758;mitochondrial intermembrane space;0.0261155502001725!GO:0006360;transcription from RNA polymerase I promoter;0.0262099894630545!GO:0008625;induction of apoptosis via death domain receptors;0.0262515473906235!GO:0051651;maintenance of cellular localization;0.0263762328487625!GO:0043488;regulation of mRNA stability;0.0263762328487625!GO:0043487;regulation of RNA stability;0.0263762328487625!GO:0006818;hydrogen transport;0.0269701015774598!GO:0008097;5S rRNA binding;0.0269701015774598!GO:0019238;cyclohydrolase activity;0.0269701015774598!GO:0005875;microtubule associated complex;0.0270657949046026!GO:0015992;proton transport;0.0272051793098139!GO:0008361;regulation of cell size;0.0280426164382007!GO:0005652;nuclear lamina;0.0283742648631106!GO:0030515;snoRNA binding;0.0284778450748886!GO:0050178;phenylpyruvate tautomerase activity;0.0285552482756074!GO:0042769;DNA damage response, detection of DNA damage;0.0286931595421754!GO:0006695;cholesterol biosynthetic process;0.0292625297444064!GO:0000738;DNA catabolic process, exonucleolytic;0.0297270643583885!GO:0022884;macromolecule transmembrane transporter activity;0.0299784899583797!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0299784899583797!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0300267806465873!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0300267806465873!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0300267806465873!GO:0051338;regulation of transferase activity;0.0301877698290054!GO:0043549;regulation of kinase activity;0.0310666253219991!GO:0051098;regulation of binding;0.0312697666084891!GO:0008320;protein transmembrane transporter activity;0.0314494168089613!GO:0030174;regulation of DNA replication initiation;0.0314541853304417!GO:0005881;cytoplasmic microtubule;0.0315575967185088!GO:0000387;spliceosomal snRNP biogenesis;0.0315575967185088!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0315688501984301!GO:0016301;kinase activity;0.031659911349394!GO:0016311;dephosphorylation;0.0324961318806945!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0327003414873191!GO:0000139;Golgi membrane;0.0327105375774704!GO:0019752;carboxylic acid metabolic process;0.0332632867542763!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0332632867542763!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0332632867542763!GO:0043433;negative regulation of transcription factor activity;0.0334806538021619!GO:0006892;post-Golgi vesicle-mediated transport;0.0338289918967728!GO:0006564;L-serine biosynthetic process;0.034298161770065!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0344710712467217!GO:0043624;cellular protein complex disassembly;0.0355175706488056!GO:0030911;TPR domain binding;0.0355209829180158!GO:0000287;magnesium ion binding;0.0360120612717172!GO:0032039;integrator complex;0.0360591532090621!GO:0003923;GPI-anchor transamidase activity;0.0362688154033819!GO:0016255;attachment of GPI anchor to protein;0.0362688154033819!GO:0042765;GPI-anchor transamidase complex;0.0362688154033819!GO:0008629;induction of apoptosis by intracellular signals;0.036339084226465!GO:0030508;thiol-disulfide exchange intermediate activity;0.0364677748392078!GO:0006082;organic acid metabolic process;0.0366845261802272!GO:0005741;mitochondrial outer membrane;0.0369338127542683!GO:0031988;membrane-bound vesicle;0.0371699038743456!GO:0030137;COPI-coated vesicle;0.0379951989506869!GO:0016049;cell growth;0.0381152995814011!GO:0035267;NuA4 histone acetyltransferase complex;0.0381889110192889!GO:0050662;coenzyme binding;0.0386267772162658!GO:0031970;organelle envelope lumen;0.0386645639689735!GO:0030663;COPI coated vesicle membrane;0.0388715211331761!GO:0030126;COPI vesicle coat;0.0388715211331761!GO:0030131;clathrin adaptor complex;0.0389719306897894!GO:0030433;ER-associated protein catabolic process;0.0389873734009175!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0389873734009175!GO:0008637;apoptotic mitochondrial changes;0.0392334285823163!GO:0016788;hydrolase activity, acting on ester bonds;0.0392560984753743!GO:0007569;cell aging;0.039423538019255!GO:0030496;midbody;0.0403537107502179!GO:0006013;mannose metabolic process;0.0403537107502179!GO:0006661;phosphatidylinositol biosynthetic process;0.0403783867962928!GO:0009161;ribonucleoside monophosphate metabolic process;0.0407992068118294!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0407992068118294!GO:0045859;regulation of protein kinase activity;0.0410945757303009!GO:0030119;AP-type membrane coat adaptor complex;0.0410945757303009!GO:0050811;GABA receptor binding;0.0415878789168757!GO:0030503;regulation of cell redox homeostasis;0.0417343912679555!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0419088767870951!GO:0000339;RNA cap binding;0.0423532028768454!GO:0030660;Golgi-associated vesicle membrane;0.0424257246607379!GO:0051287;NAD binding;0.0430078170643136!GO:0030134;ER to Golgi transport vesicle;0.0436479295563365!GO:0006378;mRNA polyadenylation;0.0437219382240765!GO:0006917;induction of apoptosis;0.0440824990791846!GO:0031529;ruffle organization and biogenesis;0.0449280982267269!GO:0043407;negative regulation of MAP kinase activity;0.0452270606789044!GO:0051320;S phase;0.0452270606789044!GO:0030145;manganese ion binding;0.0453037695333263!GO:0030125;clathrin vesicle coat;0.0453866093953901!GO:0030665;clathrin coated vesicle membrane;0.0453866093953901!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0454044066110371!GO:0006091;generation of precursor metabolites and energy;0.0458111846655361!GO:0016023;cytoplasmic membrane-bound vesicle;0.0458368317048766!GO:0043492;ATPase activity, coupled to movement of substances;0.0459662873430769!GO:0033205;cytokinesis during cell cycle;0.0462844463938218!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.046384403673381!GO:0044438;microbody part;0.0465736483564673!GO:0044439;peroxisomal part;0.0465736483564673!GO:0000123;histone acetyltransferase complex;0.0472793191512614!GO:0045185;maintenance of protein localization;0.0473427464583562!GO:0007025;beta-tubulin folding;0.04758014892802!GO:0000790;nuclear chromatin;0.0482244725000988!GO:0004659;prenyltransferase activity;0.0482684821228483!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0485895308678341!GO:0022406;membrane docking;0.0488995463474372!GO:0048278;vesicle docking;0.0488995463474372!GO:0050000;chromosome localization;0.0490431310267595!GO:0051303;establishment of chromosome localization;0.0490431310267595!GO:0031326;regulation of cellular biosynthetic process;0.0493568002582473!GO:0001836;release of cytochrome c from mitochondria;0.049932661143347!GO:0006368;RNA elongation from RNA polymerase II promoter;0.049932661143347!GO:0000793;condensed chromosome;0.049932661143347!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0499553267527588 | |||
|sample_id=10451 | |sample_id=10451 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 99: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=ZNF148:12.9174722064;NFIX:10.4661977566;ELK1,4_GABP{A,B1}:4.26892675928;NFY{A,B,C}:4.19957461269;ATF4:3.46529884941;STAT1,3:3.04089429242;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.81714809121;ZNF143:2.72670136976;NRF1:2.49182033983;YY1:2.42339114551;bHLH_family:2.39516656374;E2F1..5:2.05775412367;ATF2:1.9246730064;GFI1B:1.90947597376;JUN:1.67854612502;CREB1:1.67840144856;PBX1:1.67125262366;POU2F1..3:1.41216647319;RBPJ:1.34457119426;TFDP1:1.33068467675;MYB:1.29709353871;GFI1:1.23299005359;NFKB1_REL_RELA:1.12598005663;RFX1:0.900215217559;TBP:0.890876056262;IKZF1:0.824150160786;SOX{8,9,10}:0.794086796608;HOX{A6,A7,B6,B7}:0.782277075822;BREu{core}:0.765106893719;FOXN1:0.763372143624;ATF5_CREB3:0.751416672243;HIF1A:0.716504725014;EN1,2:0.573027510778;HOXA9_MEIS1:0.555280629835;BACH2:0.526496115491;IRF7:0.499615550384;ELF1,2,4:0.474506756084;ZEB1:0.40303227278;AHR_ARNT_ARNT2:0.355505162223;XCPE1{core}:0.319183647143;LMO2:0.317503019405;TFAP2B:0.301615971266;GTF2A1,2:0.29193794353;ESR1:0.266965388789;STAT5{A,B}:0.231739829708;PAX3,7:0.220342013973;NFE2:0.214548593451;NANOG:0.197722147053;SNAI1..3:0.18411921827;PRRX1,2:0.17342325524;FOS_FOS{B,L1}_JUN{B,D}:0.170410041487;MED-1{core}:0.161059679489;CEBPA,B_DDIT3:0.159100314289;REST:0.147604137919;LHX3,4:0.082227341347;PAX2:0.0760221582846;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0698871584706;ONECUT1,2:0.0611393147435;MYOD1:0.0431110456322;GZF1:0.0396854227304;EGR1..3:0.0362707362757;HIC1:0.0323745800729;MAFB:0.0216342479431;RXR{A,B,G}:0.0193607998077;RFX2..5_RFXANK_RFXAP:0.00423891432084;SP1:-0.000613637575182;T:-0.0113729093737;EVI1:-0.0374745148531;TP53:-0.0474409764761;ADNP_IRX_SIX_ZHX:-0.0639705842694;FOXP1:-0.111809574699;CDC5L:-0.118375170746;NR5A1,2:-0.12752618457;NKX2-1,4:-0.14314216199;HOX{A4,D4}:-0.164282042215;XBP1:-0.165237932567;NKX2-3_NKX2-5:-0.166322745934;PAX5:-0.170172496983;CRX:-0.194973064884;SOX17:-0.217824924163;FOSL2:-0.226251354351;HLF:-0.234120569519;HBP1_HMGB_SSRP1_UBTF:-0.247790948218;FOX{F1,F2,J1}:-0.253603623307;IRF1,2:-0.281275995499;NFE2L1:-0.29013083546;FOXM1:-0.290952572401;POU6F1:-0.306436047086;HNF1A:-0.310382647653;ATF6:-0.312854692053;SREBF1,2:-0.313534920482;RORA:-0.33185612859;HES1:-0.336434794692;TGIF1:-0.379674165719;CUX2:-0.407958415319;MTE{core}:-0.42922109894;MEF2{A,B,C,D}:-0.435754468903;MZF1:-0.448702655987;NANOG{mouse}:-0.450559480912;MYFfamily:-0.458199288511;SPI1:-0.496793268675;ZFP161:-0.502545937339;ZNF423:-0.511499858927;FOXQ1:-0.512822454361;TBX4,5:-0.521586605461;FOXL1:-0.546214175833;POU1F1:-0.553539706753;ZBTB6:-0.55984915526;HNF4A_NR2F1,2:-0.56056954592;LEF1_TCF7_TCF7L1,2:-0.570655947843;PAX8:-0.575575515953;VSX1,2:-0.589183034826;ZBTB16:-0.596552439277;OCT4_SOX2{dimer}:-0.608603408074;GATA6:-0.655639785376;UFEwm:-0.66270866122;SPIB:-0.677697171238;TFAP2{A,C}:-0.683295196582;CDX1,2,4:-0.68408448269;FOXD3:-0.68909674456;PITX1..3:-0.700279671759;DBP:-0.710665430773;HOX{A5,B5}:-0.72454878645;TEF:-0.764294828218;PAX1,9:-0.813486485254;PATZ1:-0.820405913361;SOX5:-0.862675025583;SOX2:-0.863256349122;SRF:-0.889558207629;TLX1..3_NFIC{dimer}:-0.894962263241;NR6A1:-0.905854930302;FOXA2:-0.923704209537;FOX{D1,D2}:-0.926116046714;MYBL2:-0.928360208785;TEAD1:-0.93634169344;NHLH1,2:-0.937996324868;RUNX1..3:-0.952034710997;NFIL3:-0.952805894829;ETS1,2:-0.953454899359;PAX6:-0.999349217183;STAT2,4,6:-1.00417145109;DMAP1_NCOR{1,2}_SMARC:-1.02751238255;GTF2I:-1.04005032603;ARID5B:-1.07569804633;NFE2L2:-1.0926825025;PRDM1:-1.1007327989;POU3F1..4:-1.10721020364;NKX3-1:-1.13489611988;ZIC1..3:-1.14782845042;AR:-1.20978829639;MTF1:-1.2347988671;MAZ:-1.28274260684;FOXO1,3,4:-1.30598627843;ZNF384:-1.39141587267;TLX2:-1.39889532923;NKX6-1,2:-1.40743033612;EBF1:-1.41056462657;PPARG:-1.49300594329;HSF1,2:-1.52011397544;IKZF2:-1.53120162416;PAX4:-1.5329395278;NKX2-2,8:-1.55400791797;NKX3-2:-1.55857706645;TFAP4:-1.56935490438;ESRRA:-1.57311425509;POU5F1:-1.58860682929;AIRE:-1.64931932381;PDX1:-1.66088570642;GCM1,2:-1.67491018879;ALX1:-1.68429533969;ZNF238:-1.68484968854;GLI1..3:-1.68684535512;BPTF:-1.70139214871;TOPORS:-1.71204487613;FOX{I1,J2}:-1.7267491586;NR1H4:-1.75874424429;FOXP3:-1.77941265099;ALX4:-1.81000193669;EP300:-1.83033326701;RREB1:-1.89976228773;HAND1,2:-1.93002118538;TFCP2:-2.07374382483;NFATC1..3:-2.0741900734;GATA4:-2.16591415152;NR3C1:-2.25360241544;SPZ1:-2.26923395836;HMX1:-2.2933631642;TAL1_TCF{3,4,12}:-2.40199089259;SMAD1..7,9:-2.4960856002;KLF4:-2.50792212176;RXRA_VDR{dimer}:-2.92681503683;HMGA1,2:-2.9671952067 | |top_motifs=ZNF148:12.9174722064;NFIX:10.4661977566;ELK1,4_GABP{A,B1}:4.26892675928;NFY{A,B,C}:4.19957461269;ATF4:3.46529884941;STAT1,3:3.04089429242;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.81714809121;ZNF143:2.72670136976;NRF1:2.49182033983;YY1:2.42339114551;bHLH_family:2.39516656374;E2F1..5:2.05775412367;ATF2:1.9246730064;GFI1B:1.90947597376;JUN:1.67854612502;CREB1:1.67840144856;PBX1:1.67125262366;POU2F1..3:1.41216647319;RBPJ:1.34457119426;TFDP1:1.33068467675;MYB:1.29709353871;GFI1:1.23299005359;NFKB1_REL_RELA:1.12598005663;RFX1:0.900215217559;TBP:0.890876056262;IKZF1:0.824150160786;SOX{8,9,10}:0.794086796608;HOX{A6,A7,B6,B7}:0.782277075822;BREu{core}:0.765106893719;FOXN1:0.763372143624;ATF5_CREB3:0.751416672243;HIF1A:0.716504725014;EN1,2:0.573027510778;HOXA9_MEIS1:0.555280629835;BACH2:0.526496115491;IRF7:0.499615550384;ELF1,2,4:0.474506756084;ZEB1:0.40303227278;AHR_ARNT_ARNT2:0.355505162223;XCPE1{core}:0.319183647143;LMO2:0.317503019405;TFAP2B:0.301615971266;GTF2A1,2:0.29193794353;ESR1:0.266965388789;STAT5{A,B}:0.231739829708;PAX3,7:0.220342013973;NFE2:0.214548593451;NANOG:0.197722147053;SNAI1..3:0.18411921827;PRRX1,2:0.17342325524;FOS_FOS{B,L1}_JUN{B,D}:0.170410041487;MED-1{core}:0.161059679489;CEBPA,B_DDIT3:0.159100314289;REST:0.147604137919;LHX3,4:0.082227341347;PAX2:0.0760221582846;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0698871584706;ONECUT1,2:0.0611393147435;MYOD1:0.0431110456322;GZF1:0.0396854227304;EGR1..3:0.0362707362757;HIC1:0.0323745800729;MAFB:0.0216342479431;RXR{A,B,G}:0.0193607998077;RFX2..5_RFXANK_RFXAP:0.00423891432084;SP1:-0.000613637575182;T:-0.0113729093737;EVI1:-0.0374745148531;TP53:-0.0474409764761;ADNP_IRX_SIX_ZHX:-0.0639705842694;FOXP1:-0.111809574699;CDC5L:-0.118375170746;NR5A1,2:-0.12752618457;NKX2-1,4:-0.14314216199;HOX{A4,D4}:-0.164282042215;XBP1:-0.165237932567;NKX2-3_NKX2-5:-0.166322745934;PAX5:-0.170172496983;CRX:-0.194973064884;SOX17:-0.217824924163;FOSL2:-0.226251354351;HLF:-0.234120569519;HBP1_HMGB_SSRP1_UBTF:-0.247790948218;FOX{F1,F2,J1}:-0.253603623307;IRF1,2:-0.281275995499;NFE2L1:-0.29013083546;FOXM1:-0.290952572401;POU6F1:-0.306436047086;HNF1A:-0.310382647653;ATF6:-0.312854692053;SREBF1,2:-0.313534920482;RORA:-0.33185612859;HES1:-0.336434794692;TGIF1:-0.379674165719;CUX2:-0.407958415319;MTE{core}:-0.42922109894;MEF2{A,B,C,D}:-0.435754468903;MZF1:-0.448702655987;NANOG{mouse}:-0.450559480912;MYFfamily:-0.458199288511;SPI1:-0.496793268675;ZFP161:-0.502545937339;ZNF423:-0.511499858927;FOXQ1:-0.512822454361;TBX4,5:-0.521586605461;FOXL1:-0.546214175833;POU1F1:-0.553539706753;ZBTB6:-0.55984915526;HNF4A_NR2F1,2:-0.56056954592;LEF1_TCF7_TCF7L1,2:-0.570655947843;PAX8:-0.575575515953;VSX1,2:-0.589183034826;ZBTB16:-0.596552439277;OCT4_SOX2{dimer}:-0.608603408074;GATA6:-0.655639785376;UFEwm:-0.66270866122;SPIB:-0.677697171238;TFAP2{A,C}:-0.683295196582;CDX1,2,4:-0.68408448269;FOXD3:-0.68909674456;PITX1..3:-0.700279671759;DBP:-0.710665430773;HOX{A5,B5}:-0.72454878645;TEF:-0.764294828218;PAX1,9:-0.813486485254;PATZ1:-0.820405913361;SOX5:-0.862675025583;SOX2:-0.863256349122;SRF:-0.889558207629;TLX1..3_NFIC{dimer}:-0.894962263241;NR6A1:-0.905854930302;FOXA2:-0.923704209537;FOX{D1,D2}:-0.926116046714;MYBL2:-0.928360208785;TEAD1:-0.93634169344;NHLH1,2:-0.937996324868;RUNX1..3:-0.952034710997;NFIL3:-0.952805894829;ETS1,2:-0.953454899359;PAX6:-0.999349217183;STAT2,4,6:-1.00417145109;DMAP1_NCOR{1,2}_SMARC:-1.02751238255;GTF2I:-1.04005032603;ARID5B:-1.07569804633;NFE2L2:-1.0926825025;PRDM1:-1.1007327989;POU3F1..4:-1.10721020364;NKX3-1:-1.13489611988;ZIC1..3:-1.14782845042;AR:-1.20978829639;MTF1:-1.2347988671;MAZ:-1.28274260684;FOXO1,3,4:-1.30598627843;ZNF384:-1.39141587267;TLX2:-1.39889532923;NKX6-1,2:-1.40743033612;EBF1:-1.41056462657;PPARG:-1.49300594329;HSF1,2:-1.52011397544;IKZF2:-1.53120162416;PAX4:-1.5329395278;NKX2-2,8:-1.55400791797;NKX3-2:-1.55857706645;TFAP4:-1.56935490438;ESRRA:-1.57311425509;POU5F1:-1.58860682929;AIRE:-1.64931932381;PDX1:-1.66088570642;GCM1,2:-1.67491018879;ALX1:-1.68429533969;ZNF238:-1.68484968854;GLI1..3:-1.68684535512;BPTF:-1.70139214871;TOPORS:-1.71204487613;FOX{I1,J2}:-1.7267491586;NR1H4:-1.75874424429;FOXP3:-1.77941265099;ALX4:-1.81000193669;EP300:-1.83033326701;RREB1:-1.89976228773;HAND1,2:-1.93002118538;TFCP2:-2.07374382483;NFATC1..3:-2.0741900734;GATA4:-2.16591415152;NR3C1:-2.25360241544;SPZ1:-2.26923395836;HMX1:-2.2933631642;TAL1_TCF{3,4,12}:-2.40199089259;SMAD1..7,9:-2.4960856002;KLF4:-2.50792212176;RXRA_VDR{dimer}:-2.92681503683;HMGA1,2:-2.9671952067 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10451-106G1;search_select_hide=table117:FF:10451-106G1 | |||
}} | }} |
Latest revision as of 14:03, 3 June 2020
Name: | embryonic kidney cell line: HEK293/SLAM infection, 24hr |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11047 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11047
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11047
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.266 |
10 | 10 | 0.608 |
100 | 100 | 0.55 |
101 | 101 | 0.576 |
102 | 102 | 0.633 |
103 | 103 | 0.67 |
104 | 104 | 0.834 |
105 | 105 | 0.648 |
106 | 106 | 0.00621 |
107 | 107 | 0.0503 |
108 | 108 | 0.718 |
109 | 109 | 0.682 |
11 | 11 | 0.159 |
110 | 110 | 0.247 |
111 | 111 | 0.701 |
112 | 112 | 1.40966e-4 |
113 | 113 | 0.447 |
114 | 114 | 0.0889 |
115 | 115 | 0.961 |
116 | 116 | 0.346 |
117 | 117 | 0.915 |
118 | 118 | 0.0526 |
119 | 119 | 0.435 |
12 | 12 | 0.743 |
120 | 120 | 0.638 |
121 | 121 | 0.75 |
122 | 122 | 0.505 |
123 | 123 | 0.294 |
124 | 124 | 0.019 |
125 | 125 | 0.916 |
126 | 126 | 0.975 |
127 | 127 | 0.681 |
128 | 128 | 0.0844 |
129 | 129 | 0.678 |
13 | 13 | 0.778 |
130 | 130 | 8.41019e-4 |
131 | 131 | 0.654 |
132 | 132 | 0.671 |
133 | 133 | 0.841 |
134 | 134 | 0.572 |
135 | 135 | 0.232 |
136 | 136 | 0.113 |
137 | 137 | 0.353 |
138 | 138 | 0.195 |
139 | 139 | 0.358 |
14 | 14 | 0.215 |
140 | 140 | 0.576 |
141 | 141 | 0.688 |
142 | 142 | 0.833 |
143 | 143 | 0.102 |
144 | 144 | 0.529 |
145 | 145 | 0.46 |
146 | 146 | 0.735 |
147 | 147 | 0.35 |
148 | 148 | 0.464 |
149 | 149 | 0.313 |
15 | 15 | 0.27 |
150 | 150 | 0.831 |
151 | 151 | 0.093 |
152 | 152 | 0.392 |
153 | 153 | 0.815 |
154 | 154 | 0.327 |
155 | 155 | 0.734 |
156 | 156 | 0.754 |
157 | 157 | 0.977 |
158 | 158 | 0.477 |
159 | 159 | 0.656 |
16 | 16 | 0.226 |
160 | 160 | 0.112 |
161 | 161 | 0.875 |
162 | 162 | 0.886 |
163 | 163 | 0.76 |
164 | 164 | 3.82654e-7 |
165 | 165 | 0.6 |
166 | 166 | 0.529 |
167 | 167 | 0.599 |
168 | 168 | 0.506 |
169 | 169 | 9.81638e-4 |
17 | 17 | 0.19 |
18 | 18 | 0.437 |
19 | 19 | 0.0825 |
2 | 2 | 0.105 |
20 | 20 | 0.195 |
21 | 21 | 0.53 |
22 | 22 | 0.143 |
23 | 23 | 0.00638 |
24 | 24 | 0.868 |
25 | 25 | 0.887 |
26 | 26 | 0.387 |
27 | 27 | 0.038 |
28 | 28 | 0.745 |
29 | 29 | 0.999 |
3 | 3 | 0.0878 |
30 | 30 | 0.555 |
31 | 31 | 0.594 |
32 | 32 | 0.0697 |
33 | 33 | 0.76 |
34 | 34 | 0.238 |
35 | 35 | 0.513 |
36 | 36 | 0.595 |
37 | 37 | 0.685 |
38 | 38 | 0.334 |
39 | 39 | 0.938 |
4 | 4 | 0.00121 |
40 | 40 | 0.996 |
41 | 41 | 0.72 |
42 | 42 | 0.553 |
43 | 43 | 0.447 |
44 | 44 | 0.421 |
45 | 45 | 0.545 |
46 | 46 | 0.0925 |
47 | 47 | 0.308 |
48 | 48 | 0.24 |
49 | 49 | 0.467 |
5 | 5 | 0.695 |
50 | 50 | 0.647 |
51 | 51 | 0.376 |
52 | 52 | 0.25 |
53 | 53 | 0.473 |
54 | 54 | 0.323 |
55 | 55 | 0.533 |
56 | 56 | 0.603 |
57 | 57 | 0.188 |
58 | 58 | 0.428 |
59 | 59 | 0.393 |
6 | 6 | 0.72 |
60 | 60 | 0.0933 |
61 | 61 | 0.967 |
62 | 62 | 0.149 |
63 | 63 | 0.085 |
64 | 64 | 0.275 |
65 | 65 | 0.127 |
66 | 66 | 1.78811e-12 |
67 | 67 | 0.835 |
68 | 68 | 0.876 |
69 | 69 | 0.913 |
7 | 7 | 0.694 |
70 | 70 | 0.51 |
71 | 71 | 0.281 |
72 | 72 | 0.396 |
73 | 73 | 0.452 |
74 | 74 | 0.558 |
75 | 75 | 0.843 |
76 | 76 | 0.951 |
77 | 77 | 0.051 |
78 | 78 | 0.912 |
79 | 79 | 0.529 |
8 | 8 | 0.073 |
80 | 80 | 0.339 |
81 | 81 | 0.314 |
82 | 82 | 0.144 |
83 | 83 | 0.384 |
84 | 84 | 0.649 |
85 | 85 | 0.0323 |
86 | 86 | 0.601 |
87 | 87 | 0.157 |
88 | 88 | 0.52 |
89 | 89 | 0.05 |
9 | 9 | 0.109 |
90 | 90 | 0.397 |
91 | 91 | 0.00791 |
92 | 92 | 0.203 |
93 | 93 | 0.663 |
94 | 94 | 0.0684 |
95 | 95 | 0.843 |
96 | 96 | 0.236 |
97 | 97 | 0.595 |
98 | 98 | 0.398 |
99 | 99 | 0.497 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11047
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100007 HEK-293 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0102733 (embryonic kidney cell line sample)
0100669 (embryonic cell line sample)
0100007 (HEK-293 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)