FF:10451-106G1: Difference between revisions

Latest revision as of 14:03, 3 June 2020

Name:	embryonic kidney cell line: HEK293/SLAM infection, 24hr
Species:	Human (Homo sapiens)
Library ID:	CNhs11047
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	HEK293/SLAM
company	NA
collaboration	Chieko Kai (University of Tokyo)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005447

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11047		CAGE		DRX007870		DRR008742

Accession ID Hg19

Library id		BAM		CTSS
CNhs11047		DRZ000167		DRZ001552

Accession ID Hg38

Library id		BAM		CTSS
CNhs11047		DRZ011517		DRZ012902

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.62
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0608
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0608
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.048
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.101
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.23
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	1.056
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0336
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00904
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0608
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.717
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.114
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.127
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0608
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.644
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.227
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11047

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0395
MA0003.1	MA0003.1	0.173
MA0004.1	MA0004.1	0.322
MA0006.1	MA0006.1	0.877
MA0007.1	MA0007.1	0.827
MA0009.1	MA0009.1	0.64
MA0014.1	MA0014.1	0.914
MA0017.1	MA0017.1	0.0582
MA0018.2	MA0018.2	0.00113
MA0019.1	MA0019.1	0.253
MA0024.1	MA0024.1	0.0035
MA0025.1	MA0025.1	0.4
MA0027.1	MA0027.1	0.568
MA0028.1	MA0028.1	2.22641e-5
MA0029.1	MA0029.1	0.00662
MA0030.1	MA0030.1	0.992
MA0031.1	MA0031.1	0.0494
MA0035.2	MA0035.2	8.11438e-4
MA0038.1	MA0038.1	0.0375
MA0039.2	MA0039.2	0.137
MA0040.1	MA0040.1	0.735
MA0041.1	MA0041.1	0.465
MA0042.1	MA0042.1	0.835
MA0043.1	MA0043.1	0.0408
MA0046.1	MA0046.1	0.688
MA0047.2	MA0047.2	0.716
MA0048.1	MA0048.1	0.383
MA0050.1	MA0050.1	0.692
MA0051.1	MA0051.1	0.0394
MA0052.1	MA0052.1	0.812
MA0055.1	MA0055.1	0.187
MA0057.1	MA0057.1	0.295
MA0058.1	MA0058.1	0.234
MA0059.1	MA0059.1	0.481
MA0060.1	MA0060.1	1.18898e-32
MA0061.1	MA0061.1	0.852
MA0062.2	MA0062.2	1.37747e-7
MA0065.2	MA0065.2	0.114
MA0066.1	MA0066.1	0.07
MA0067.1	MA0067.1	0.274
MA0068.1	MA0068.1	0.379
MA0069.1	MA0069.1	0.84
MA0070.1	MA0070.1	0.127
MA0071.1	MA0071.1	0.499
MA0072.1	MA0072.1	0.0119
MA0073.1	MA0073.1	0.982
MA0074.1	MA0074.1	0.507
MA0076.1	MA0076.1	7.91304e-7
MA0077.1	MA0077.1	0.919
MA0078.1	MA0078.1	0.473
MA0079.2	MA0079.2	0.0519
MA0080.2	MA0080.2	0.0286
MA0081.1	MA0081.1	0.862
MA0083.1	MA0083.1	0.0184
MA0084.1	MA0084.1	0.603
MA0087.1	MA0087.1	0.553
MA0088.1	MA0088.1	0.289
MA0090.1	MA0090.1	0.242
MA0091.1	MA0091.1	0.213
MA0092.1	MA0092.1	0.162
MA0093.1	MA0093.1	0.234
MA0099.2	MA0099.2	0.644
MA0100.1	MA0100.1	0.57
MA0101.1	MA0101.1	0.167
MA0102.2	MA0102.2	0.522
MA0103.1	MA0103.1	0.574
MA0104.2	MA0104.2	0.119
MA0105.1	MA0105.1	0.0169
MA0106.1	MA0106.1	0.431
MA0107.1	MA0107.1	0.0959
MA0108.2	MA0108.2	0.137
MA0111.1	MA0111.1	0.36
MA0112.2	MA0112.2	5.99671e-6
MA0113.1	MA0113.1	0.253
MA0114.1	MA0114.1	0.213
MA0115.1	MA0115.1	0.84
MA0116.1	MA0116.1	0.00239
MA0117.1	MA0117.1	0.512
MA0119.1	MA0119.1	0.0289
MA0122.1	MA0122.1	0.702
MA0124.1	MA0124.1	0.86
MA0125.1	MA0125.1	0.647
MA0131.1	MA0131.1	0.403
MA0135.1	MA0135.1	0.393
MA0136.1	MA0136.1	0.749
MA0137.2	MA0137.2	0.69
MA0138.2	MA0138.2	0.103
MA0139.1	MA0139.1	0.954
MA0140.1	MA0140.1	2.26295e-8
MA0141.1	MA0141.1	0.151
MA0142.1	MA0142.1	0.433
MA0143.1	MA0143.1	0.303
MA0144.1	MA0144.1	0.4
MA0145.1	MA0145.1	0.3
MA0146.1	MA0146.1	0.201
MA0147.1	MA0147.1	0.198
MA0148.1	MA0148.1	0.471
MA0149.1	MA0149.1	0.927
MA0150.1	MA0150.1	0.31
MA0152.1	MA0152.1	0.56
MA0153.1	MA0153.1	0.619
MA0154.1	MA0154.1	0.0037
MA0155.1	MA0155.1	0.17
MA0156.1	MA0156.1	0.133
MA0157.1	MA0157.1	0.00386
MA0159.1	MA0159.1	0.264
MA0160.1	MA0160.1	0.369
MA0162.1	MA0162.1	0.179
MA0163.1	MA0163.1	0.02
MA0164.1	MA0164.1	0.699
MA0258.1	MA0258.1	0.00144
MA0259.1	MA0259.1	0.283

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11047

Novel motif	Logo	P-value
1	1	0.266
10	10	0.608
100	100	0.55
101	101	0.576
102	102	0.633
103	103	0.67
104	104	0.834
105	105	0.648
106	106	0.00621
107	107	0.0503
108	108	0.718
109	109	0.682
11	11	0.159
110	110	0.247
111	111	0.701
112	112	1.40966e-4
113	113	0.447
114	114	0.0889
115	115	0.961
116	116	0.346
117	117	0.915
118	118	0.0526
119	119	0.435
12	12	0.743
120	120	0.638
121	121	0.75
122	122	0.505
123	123	0.294
124	124	0.019
125	125	0.916
126	126	0.975
127	127	0.681
128	128	0.0844
129	129	0.678
13	13	0.778
130	130	8.41019e-4
131	131	0.654
132	132	0.671
133	133	0.841
134	134	0.572
135	135	0.232
136	136	0.113
137	137	0.353
138	138	0.195
139	139	0.358
14	14	0.215
140	140	0.576
141	141	0.688
142	142	0.833
143	143	0.102
144	144	0.529
145	145	0.46
146	146	0.735
147	147	0.35
148	148	0.464
149	149	0.313
15	15	0.27
150	150	0.831
151	151	0.093
152	152	0.392
153	153	0.815
154	154	0.327
155	155	0.734
156	156	0.754
157	157	0.977
158	158	0.477
159	159	0.656
16	16	0.226
160	160	0.112
161	161	0.875
162	162	0.886
163	163	0.76
164	164	3.82654e-7
165	165	0.6
166	166	0.529
167	167	0.599
168	168	0.506
169	169	9.81638e-4
17	17	0.19
18	18	0.437
19	19	0.0825
2	2	0.105
20	20	0.195
21	21	0.53
22	22	0.143
23	23	0.00638
24	24	0.868
25	25	0.887
26	26	0.387
27	27	0.038
28	28	0.745
29	29	0.999
3	3	0.0878
30	30	0.555
31	31	0.594
32	32	0.0697
33	33	0.76
34	34	0.238
35	35	0.513
36	36	0.595
37	37	0.685
38	38	0.334
39	39	0.938
4	4	0.00121
40	40	0.996
41	41	0.72
42	42	0.553
43	43	0.447
44	44	0.421
45	45	0.545
46	46	0.0925
47	47	0.308
48	48	0.24
49	49	0.467
5	5	0.695
50	50	0.647
51	51	0.376
52	52	0.25
53	53	0.473
54	54	0.323
55	55	0.533
56	56	0.603
57	57	0.188
58	58	0.428
59	59	0.393
6	6	0.72
60	60	0.0933
61	61	0.967
62	62	0.149
63	63	0.085
64	64	0.275
65	65	0.127
66	66	1.78811e-12
67	67	0.835
68	68	0.876
69	69	0.913
7	7	0.694
70	70	0.51
71	71	0.281
72	72	0.396
73	73	0.452
74	74	0.558
75	75	0.843
76	76	0.951
77	77	0.051
78	78	0.912
79	79	0.529
8	8	0.073
80	80	0.339
81	81	0.314
82	82	0.144
83	83	0.384
84	84	0.649
85	85	0.0323
86	86	0.601
87	87	0.157
88	88	0.52
89	89	0.05
9	9	0.109
90	90	0.397
91	91	0.00791
92	92	0.203
93	93	0.663
94	94	0.0684
95	95	0.843
96	96	0.236
97	97	0.595
98	98	0.398
99	99	0.497

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11047

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100007 HEK-293 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0102733 (embryonic kidney cell line sample)
0100669 (embryonic cell line sample)
0100007 (HEK-293 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005447
+|accession_numbers=CAGE;DRX007870;DRR008742;DRZ000167;DRZ001552;DRZ011517;DRZ012902
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:84498989..84499003,+!p1@ZNF711!2.08!160.70!ZNF711;;chr12:8034651..8034657,+!p@chr12:8034651..8034657,+!1.92!82.68!NANOGP1;;chr7:28448965..28448994,+!p2@CREB5!1.71!171.37!CREB5;;chr15:76629123..76629151,+!p1@ISL2!1.68!51.41!ISL2;;chr2:172967621..172967637,-!p1@DLX2!1.59!97.86!DLX2;;chr8:81398682..81398697,+!p6@ZBTB10!1.55!45.40!ZBTB10;;chr7:28448995..28449011,+!p4@CREB5!1.54!46.75!CREB5;;chr1:935467..935484,-!p1@HES4!1.53!140.70!HES4;;chr19:23941647..23941672,-!p2@ZNF681!1.52!52.46!ZNF681;;chr7:28449026..28449037,+!p8@CREB5!1.50!30.67!CREB5;;chr1:212782094..212782109,+!p1@ATF3!1.49!776.72!ATF3;;chr22:21356345..21356367,-!p3@THAP7!1.48!38.93!THAP7;;chr6:20402102..20402152,+!p1@E2F3!1.47!113.49!E2F3;;chr11:615570..615721,-!p2@IRF7!1.47!55.47!IRF7;;chr1:227751231..227751273,+!p1@ZNF678!1.40!148.82!ZNF678;;chr7:27205136..27205164,-!p1@HOXA9!1.40!24.20!HOXA9;;chr17:46703942..46703964,-!p4@HOXB9!1.40!24.20!HOXB9;;chr6:19837592..19837621,+!p1@ID4!1.38!134.99!ID4;;chr11:615942..615957,-!p1@IRF7!1.37!204.74!IRF7;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.37!22.70!EN2;;chr17:46703687..46703740,-!p1@HOXB9!1.36!21.80!HOXB9;;chr21:34398234..34398250,+!p1@OLIG2!1.34!21.05!OLIG2;;chr5:172662197..172662216,-!p1@NKX2-5!1.34!20.89!NKX2-5;;chr7:99680302..99680329,-!p5@ZNF3!1.34!20.89!ZNF3;;chr17:46620898..46620927,-!p9@HOXB2!1.31!22.85!HOXB2;;chr10:124768217..124768228,-!p2@IKZF5!1.31!19.24!IKZF5;;chr17:8027418..8027432,-!p1@HES7!1.30!19.09!HES7;;chr20:42295713..42295738,+!p2@MYBL2!1.29!106.73!MYBL2;;chr1:935496..935509,-!p3@HES4!1.29!27.81!HES4;;chr7:28449015..28449024,+!p6@CREB5!1.28!18.04!CREB5;;chr19:23433144..23433204,-!p1@ZNF724P!1.26!76.82!ZNF724P;;chr19:33793430..33793447,-!p1@CEBPA!1.26!70.65!CEBPA;;chr15:76629007..76629012,+!p4@ISL2!1.26!17.29!ISL2;;chr6:90929475..90929486,-!p8@BACH2!1.26!17.14!BACH2;;chr6:44355499..44355514,+!p3@CDC5L!1.25!18.49!CDC5L;;chr6:56954867..56954882,+!p2@ZNF451!1.24!47.80!ZNF451;;chr12:108154309..108154359,-!p6@PRDM4!1.24!16.23!PRDM4;;chr6:126070769..126070801,+!p1@HEY2!1.23!18.19!HEY2;;chr2:223163706..223163730,-!p1@PAX3!1.23!16.08!PAX3;;chr6:90929463..90929474,-!p9@BACH2!1.22!15.63!BACH2;;chr19:21265028..21265052,+!p2@ZNF714!1.21!27.06!ZNF714;;chr19:11750566..11750627,+!p1@ZNF833P!1.21!20.59!ZNF833P;;chr5:43121586..43121601,+!p10@ZNF131!1.21!17.29!ZNF131;;chr19:21106081..21106115,+!p2@ZNF85!1.19!42.39!ZNF85;;chr2:122042770..122042785,-!p1@TFCP2L1!1.19!14.58!TFCP2L1;;chr7:35293685..35293718,-!p1@TBX20!1.18!14.28!TBX20;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.13!HOXC9;;chr5:134369905..134369972,-!p1@PITX1!1.16!20.44!PITX1;;chrX:84499081..84499115,+!p2@ZNF711!1.16!19.99!ZNF711;;chr1:91487774..91487802,-!p2@ZNF644!1.15!34.72!ZNF644;;chr1:227751287..227751298,+!p2@ZNF678!1.15!13.23!ZNF678;;chr7:64838786..64838809,+!p2@ZNF92!1.14!72.76!ZNF92;;chr7:27205106..27205134,-!p2@HOXA9!1.14!12.78!HOXA9;;chr17:46667594..46667619,-!p1@HOXB3!1.14!12.78!HOXB3;;chr1:91487836..91487854,-!p3@ZNF644!1.12!27.66!ZNF644;;chr17:4890649..4890664,-!p5@CAMTA2!1.12!12.33!CAMTA2;;chr19:21264991..21265026,+!p1@ZNF714!1.11!78.17!ZNF714;;chr2:200322654..200322707,-!p2@SATB2!1.11!17.29!SATB2;;chr3:40547564..40547616,+!p1@ZNF620!1.11!16.84!ZNF620;;chr10:8095593..8095625,+!p3@GATA3!1.11!13.83!GATA3;;chr14:37131058..37131139,+!p1@PAX9!1.11!12.03!PAX9;;chr20:42295745..42295765,+!p1@MYBL2!1.10!190.46!MYBL2;;chr10:104155480..104155534,+!p2@NFKB2!1.10!74.71!NFKB2;;chr19:22034809..22034878,-!p2@ZNF43!1.10!40.59!ZNF43;;chr19:21950332..21950356,-!p2@ZNF100!1.10!24.50!ZNF100;;chr19:24097706..24097731,+!p2@ZNF726!1.10!22.40!ZNF726;;chr10:97889464..97889494,+!p3@ZNF518A!1.10!21.65!ZNF518A;;chr8:81397820..81397836,+!p2@ZBTB10!1.10!14.73!ZBTB10;;chr7:28725715..28725727,+!p3@CREB5!1.10!13.68!CREB5;;chr17:38020392..38020477,-!p1@IKZF3!1.10!11.73!IKZF3;;chr1:59249645..59249656,-!p4@JUN!1.09!28.41!JUN;;chr8:80679993..80680011,-!p1@HEY1!1.09!16.39!HEY1;;chr7:27192185..27192209,-!p1@HOXA3!1.09!11.42!HOXA3;;chr16:29819403..29819442,+!p5@MAZ!1.08!90.65!MAZ;;chr16:29818160..29818188,+!p6@MAZ!1.08!52.16!MAZ;;chr16:30621615..30621660,-!p2@ZNF689!1.08!20.29!ZNF689;;chrX:148841186..148841193,+!p@chrX:148841186..148841193,+!1.08!10.97!HSFX1;;chr8:81397846..81397860,+!p3@ZBTB10!1.07!13.38!ZBTB10;;chr1:149858461..149858479,+!p1@BOLA1!1.06!4140.06!BOLA1;;chr19:21203481..21203504,+!p2@ZNF430!1.06!24.65!ZNF430;;chr7:64126535..64126559,+!p2@ZNF107!1.06!22.70!ZNF107;;chr2:176969228..176969260,+!p1@HOXD11!1.06!10.37!HOXD11;;chr19:45004556..45004581,-!p1@ZNF180!1.05!62.38!ZNF180;;chr19:21512115..21512135,-!p3@ZNF708!1.05!21.05!ZNF708;;chr10:104154246..104154347,+!p3@NFKB2!1.04!61.93!NFKB2;;chr19:45504688..45504782,+!p1@RELB!1.04!60.58!RELB;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.66!NFATC1;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!1.03!62.08!SNAPC4;;chr19:58694421..58694485,+!p1@ZNF274!1.03!52.46!ZNF274;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.63!ZNF680;;chr17:4890672..4890692,-!p3@CAMTA2!1.03!12.93!CAMTA2;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.62!PITX1;;chr1:935398..935465,-!p2@HES4!1.02!19.69!HES4;;chr16:30569801..30569845,-!p4@ZNF764!1.02!12.63!ZNF764;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.02!9.47!HOXC5;;chr1:45805872..45805900,+!p2@TOE1!1.01!22.70!TOE1;;chr19:20011775..20011800,+!p2@ZNF93!1.01!16.69!ZNF93;;chr16:30407021..30407061,+!p3@ZNF48!1.01!10.37!ZNF48;;chr17:46703826..46703845,-!p3@HOXB9!1.01!9.17!HOXB9;;chr7:97840743..97840786,+!p1@BHLHA15!1.01!9.17!BHLHA15;;chr1:120190786..120190915,-!p1@ZNF697!1.00!65.69!ZNF697;;chr12:133758115..133758138,+!p3@ZNF268!1.00!21.80!ZNF268;;chr20:45142154..45142227,-!p1@ZNF334!1.00!18.19!ZNF334;;chr6:20402070..20402082,+!p5@E2F3!1.00!10.52!E2F3;;chr5:170736243..170736279,+!p1@TLX3!1.00!9.02!TLX3;;chr7:64363682..64363692,+!p4@ZNF273!1.00!9.02!ZNF273;;chr8:11561684..11561751,+!p1@GATA4!1.00!9.02!GATA4;;chr16:3285119..3285133,-!p2@ZNF200!0.99!17.74!ZNF200;;chr16:85932760..85932775,+!p1@IRF8!0.99!8.87!IRF8;;chr1:92952473..92952489,-!p3@GFI1!0.99!8.72!GFI1;;chr6:126102254..126102289,+!p5@NCOA7!0.98!24.35!NCOA7;;chrX:77041657..77041668,-!p2@ATRX!0.98!17.44!ATRX;;chr17:46703436..46703460,-!p7@HOXB9!0.98!8.57!HOXB9;;chr19:24097675..24097699,+!p1@ZNF726!0.97!28.26!ZNF726;;chr12:10875351..10875422,-!p4@CSDA!0.97!16.54!CSDA;;chr1:63788229..63788250,+!p1@FOXD3!0.97!8.42!FOXD3;;chr2:73520667..73520683,-!p1@EGR4!0.97!8.42!EGR4;;chr3:27763807..27763822,-!p1@EOMES!0.97!8.42!EOMES;;chr1:59249688..59249703,-!p3@JUN!0.96!49.91!JUN;;chr12:80084737..80084763,-!p3@PAWR!0.96!31.27!PAWR;;chr4:4861385..4861398,+!p1@MSX1!0.96!24.50!MSX1;;chr19:47616992..47617011,-!p4@ZC3H4!0.96!17.74!ZC3H4;;chr2:71127699..71127744,+!p1@VAX2!0.96!16.99!VAX2;;chr7:148844581..148844606,+!p2@ZNF398!0.96!13.83!ZNF398;;chr11:62369084..62369093,-!p9@MTA2!0.96!8.12!MTA2;;chr7:28725740..28725778,+!p1@CREB5!0.95!73.51!CREB5;;chr9:35732647..35732678,+!p2@CREB3!0.95!45.40!CREB3;;chr16:54320101..54320125,-!p4@IRX3!0.95!11.42!IRX3;;chr11:6947720..6947812,+!p1@ZNF215!0.95!10.52!ZNF215;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.97!FOXA1;;chr14:29235961..29236008,+!p1@FOXG1!0.95!7.82!FOXG1;;chr9:129376201..129376225,+!p1@LMX1B!0.95!7.82!LMX1B;;chr2:42721205..42721307,+!p4@MTA3!0.94!7.67!MTA3;;chr20:39317868..39317884,-!p1@MAFB!0.93!91.70!MAFB;;chr6:44233252..44233296,-!p1@NFKBIE!0.93!76.97!NFKBIE;;chr10:96122645..96122675,-!p2@NOC3L!0.93!36.83!NOC3L;;chr5:76383133..76383186,-!p2@ZBED3!0.93!15.78!ZBED3;;chr6:31515311..31515330,+!p3@NFKBIL1!0.93!10.82!NFKBIL1;;chr19:33865166..33865182,+!p7@CEBPG!0.93!7.52!CEBPG;;chr21:38071403..38071428,+!p2@SIM2!0.93!7.52!SIM2;;chr5:137801160..137801176,+!p1@EGR1!0.92!763.34!EGR1;;chr8:81398444..81398472,+!p1@ZBTB10!0.92!30.97!ZBTB10;;chr7:64254834..64254854,+!p2@ZNF138!0.92!13.53!ZNF138;;chr18:55102598..55102623,+!p1@ONECUT2!0.92!7.37!ONECUT2;;chr19:1592714..1592762,-!p1@MBD3!0.91!56.52!MBD3;;chr6:126240442..126240459,+!p4@NCOA7!0.91!9.17!NCOA7;;chr21:34143971..34143983,-!p8@GCFC1!0.91!7.22!GCFC1;;chr2:176969179..176969226,+!p2@HOXD11!0.91!7.22!HOXD11;;chr2:88752207..88752218,-!p1@FOXI3!0.91!7.22!FOXI3;;chr19:50529247..50529296,+!p1@ZNF473!0.90!46.75!ZNF473;;chr17:41277372..41277418,-!p1@BRCA1!0.90!26.01!BRCA1;;chr19:58111241..58111292,+!p1@ZNF530!0.90!24.65!ZNF530;;chr17:4890695..4890773,-!p2@CAMTA2!0.90!22.70!CAMTA2;;chr8:22550982..22550999,-!p1@EGR3!0.90!20.44!EGR3;;chr21:34143999..34144016,-!p4@GCFC1!0.90!12.63!GCFC1;;chr19:54024251..54024305,+!p4@ZNF331!0.90!11.57!ZNF331;;chr16:30582888..30582923,-!p3@ZNF688!0.90!11.12!ZNF688;;chr19:22034784..22034801,-!p4@ZNF43!0.90!6.91!ZNF43;;chr3:169490834..169490863,+!p4@MYNN!0.90!6.91!MYNN;;chr11:19262461..19262476,-!p5@E2F8!0.90!6.91!E2F8;;chr6:126102292..126102329,+!p3@NCOA7!0.89!23.45!NCOA7;;chr19:23941680..23941704,-!p1@ZNF681!0.89!20.74!ZNF681;;chr17:79885537..79885554,-!p2@MAFG!0.89!13.53!MAFG;;chr7:27213893..27213954,-!p1@HOXA10!0.89!6.76!HOXA10;;chr2:237077022..237077038,-!p1@GBX2!0.89!6.76!GBX2;;chr19:57791328..57791377,+!p2@ZNF460!0.88!84.48!ZNF460;;chr19:44529479..44529542,+!p1@ZNF222,p1@ZNF284!0.88!30.22!ZNF222;;chr7:19157248..19157268,-!p1@TWIST1!0.88!19.24!TWIST1;;chr6:85473156..85473210,-!p2@TBX18!0.88!8.12!TBX18;;chr1:23694794..23694863,-!p1@ZNF436!0.87!23.00!ZNF436;;chr7:148581327..148581347,-!p2@EZH2!0.87!22.85!EZH2;;chr6:126240380..126240430,+!p2@NCOA7!0.87!17.44!NCOA7;;chr16:29818132..29818144,+!p12@MAZ!0.87!13.38!MAZ;;chr19:20150268..20150298,-!p2@ZNF682!0.87!12.48!ZNF682;;chr11:47270477..47270494,+!p4@NR1H3!0.87!9.47!NR1H3;;chr19:52531585..52531596,-!p2@ZNF614!0.87!8.42!ZNF614;;chr18:55102628..55102646,+!p2@ONECUT2!0.87!6.46!ONECUT2;;chr22:29196547..29196563,-!p2@XBP1!0.86!243.52!XBP1;;chr19:37569314..37569381,+!p1@ZNF420!0.86!23.75!ZNF420;;chr18:19749541..19749557,+!p1@GATA6!0.86!20.74!GATA6;;chr9:114287433..114287513,+!p1@ZNF483!0.86!17.14!ZNF483;;chr5:178287021..178287042,+!p2@ZNF354B!0.86!10.37!ZNF354B;;chr6:43337124..43337144,-!p4@ZNF318!0.86!9.17!ZNF318;;chr7:27224842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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520infection%252c%252024hr.CNhs11047.10451-106G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10451-106G1
 |is_a=EFO:0002091;;FF:0000210;;FF:0100007
 |is_obsolete=
+|library_id=CNhs11047
+|library_id_phase_based=2:CNhs11047
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10451
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10451
 |name=embryonic kidney cell line: HEK293/SLAM infection, 24hr
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11047,LSID722,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=106
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@@ Line 61: / Line 78: @@
 |rna_weight_ug=8.109
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+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=HEK293/SLAM
@@ Line 82: / Line 100: @@
 |top_motifs=ZNF148:12.9174722064;NFIX:10.4661977566;ELK1,4_GABP{A,B1}:4.26892675928;NFY{A,B,C}:4.19957461269;ATF4:3.46529884941;STAT1,3:3.04089429242;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.81714809121;ZNF143:2.72670136976;NRF1:2.49182033983;YY1:2.42339114551;bHLH_family:2.39516656374;E2F1..5:2.05775412367;ATF2:1.9246730064;GFI1B:1.90947597376;JUN:1.67854612502;CREB1:1.67840144856;PBX1:1.67125262366;POU2F1..3:1.41216647319;RBPJ:1.34457119426;TFDP1:1.33068467675;MYB:1.29709353871;GFI1:1.23299005359;NFKB1_REL_RELA:1.12598005663;RFX1:0.900215217559;TBP:0.890876056262;IKZF1:0.824150160786;SOX{8,9,10}:0.794086796608;HOX{A6,A7,B6,B7}:0.782277075822;BREu{core}:0.765106893719;FOXN1:0.763372143624;ATF5_CREB3:0.751416672243;HIF1A:0.716504725014;EN1,2:0.573027510778;HOXA9_MEIS1:0.555280629835;BACH2:0.526496115491;IRF7:0.499615550384;ELF1,2,4:0.474506756084;ZEB1:0.40303227278;AHR_ARNT_ARNT2:0.355505162223;XCPE1{core}:0.319183647143;LMO2:0.317503019405;TFAP2B:0.301615971266;GTF2A1,2:0.29193794353;ESR1:0.266965388789;STAT5{A,B}:0.231739829708;PAX3,7:0.220342013973;NFE2:0.214548593451;NANOG:0.197722147053;SNAI1..3:0.18411921827;PRRX1,2:0.17342325524;FOS_FOS{B,L1}_JUN{B,D}:0.170410041487;MED-1{core}:0.161059679489;CEBPA,B_DDIT3:0.159100314289;REST:0.147604137919;LHX3,4:0.082227341347;PAX2:0.0760221582846;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0698871584706;ONECUT1,2:0.0611393147435;MYOD1:0.0431110456322;GZF1:0.0396854227304;EGR1..3:0.0362707362757;HIC1:0.0323745800729;MAFB:0.0216342479431;RXR{A,B,G}:0.0193607998077;RFX2..5_RFXANK_RFXAP:0.00423891432084;SP1:-0.000613637575182;T:-0.0113729093737;EVI1:-0.0374745148531;TP53:-0.0474409764761;ADNP_IRX_SIX_ZHX:-0.0639705842694;FOXP1:-0.111809574699;CDC5L:-0.118375170746;NR5A1,2:-0.12752618457;NKX2-1,4:-0.14314216199;HOX{A4,D4}:-0.164282042215;XBP1:-0.165237932567;NKX2-3_NKX2-5:-0.166322745934;PAX5:-0.170172496983;CRX:-0.194973064884;SOX17:-0.217824924163;FOSL2:-0.226251354351;HLF:-0.234120569519;HBP1_HMGB_SSRP1_UBTF:-0.247790948218;FOX{F1,F2,J1}:-0.253603623307;IRF1,2:-0.281275995499;NFE2L1:-0.29013083546;FOXM1:-0.290952572401;POU6F1:-0.306436047086;HNF1A:-0.310382647653;ATF6:-0.312854692053;SREBF1,2:-0.313534920482;RORA:-0.33185612859;HES1:-0.336434794692;TGIF1:-0.379674165719;CUX2:-0.407958415319;MTE{core}:-0.42922109894;MEF2{A,B,C,D}:-0.435754468903;MZF1:-0.448702655987;NANOG{mouse}:-0.450559480912;MYFfamily:-0.458199288511;SPI1:-0.496793268675;ZFP161:-0.502545937339;ZNF423:-0.511499858927;FOXQ1:-0.512822454361;TBX4,5:-0.521586605461;FOXL1:-0.546214175833;POU1F1:-0.553539706753;ZBTB6:-0.55984915526;HNF4A_NR2F1,2:-0.56056954592;LEF1_TCF7_TCF7L1,2:-0.570655947843;PAX8:-0.575575515953;VSX1,2:-0.589183034826;ZBTB16:-0.596552439277;OCT4_SOX2{dimer}:-0.608603408074;GATA6:-0.655639785376;UFEwm:-0.66270866122;SPIB:-0.677697171238;TFAP2{A,C}:-0.683295196582;CDX1,2,4:-0.68408448269;FOXD3:-0.68909674456;PITX1..3:-0.700279671759;DBP:-0.710665430773;HOX{A5,B5}:-0.72454878645;TEF:-0.764294828218;PAX1,9:-0.813486485254;PATZ1:-0.820405913361;SOX5:-0.862675025583;SOX2:-0.863256349122;SRF:-0.889558207629;TLX1..3_NFIC{dimer}:-0.894962263241;NR6A1:-0.905854930302;FOXA2:-0.923704209537;FOX{D1,D2}:-0.926116046714;MYBL2:-0.928360208785;TEAD1:-0.93634169344;NHLH1,2:-0.937996324868;RUNX1..3:-0.952034710997;NFIL3:-0.952805894829;ETS1,2:-0.953454899359;PAX6:-0.999349217183;STAT2,4,6:-1.00417145109;DMAP1_NCOR{1,2}_SMARC:-1.02751238255;GTF2I:-1.04005032603;ARID5B:-1.07569804633;NFE2L2:-1.0926825025;PRDM1:-1.1007327989;POU3F1..4:-1.10721020364;NKX3-1:-1.13489611988;ZIC1..3:-1.14782845042;AR:-1.20978829639;MTF1:-1.2347988671;MAZ:-1.28274260684;FOXO1,3,4:-1.30598627843;ZNF384:-1.39141587267;TLX2:-1.39889532923;NKX6-1,2:-1.40743033612;EBF1:-1.41056462657;PPARG:-1.49300594329;HSF1,2:-1.52011397544;IKZF2:-1.53120162416;PAX4:-1.5329395278;NKX2-2,8:-1.55400791797;NKX3-2:-1.55857706645;TFAP4:-1.56935490438;ESRRA:-1.57311425509;POU5F1:-1.58860682929;AIRE:-1.64931932381;PDX1:-1.66088570642;GCM1,2:-1.67491018879;ALX1:-1.68429533969;ZNF238:-1.68484968854;GLI1..3:-1.68684535512;BPTF:-1.70139214871;TOPORS:-1.71204487613;FOX{I1,J2}:-1.7267491586;NR1H4:-1.75874424429;FOXP3:-1.77941265099;ALX4:-1.81000193669;EP300:-1.83033326701;RREB1:-1.89976228773;HAND1,2:-1.93002118538;TFCP2:-2.07374382483;NFATC1..3:-2.0741900734;GATA4:-2.16591415152;NR3C1:-2.25360241544;SPZ1:-2.26923395836;HMX1:-2.2933631642;TAL1_TCF{3,4,12}:-2.40199089259;SMAD1..7,9:-2.4960856002;KLF4:-2.50792212176;RXRA_VDR{dimer}:-2.92681503683;HMGA1,2:-2.9671952067
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10451-106G1;search_select_hide=table117:FF:10451-106G1
 }}

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FF:10451-106G1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0