FF:10493-107B7: Difference between revisions

Latest revision as of 14:27, 3 June 2020

Name:	mesothelioma cell line:ACC-MESO-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11263
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	female
age	61
cell type	mesothelial cell
cell line	ACC-MESO-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005627

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11263		CAGE		DRX007936		DRR008808

Accession ID Hg19

Library id		BAM		CTSS
CNhs11263		DRZ000233		DRZ001618

Accession ID Hg38

Library id		BAM		CTSS
CNhs11263		DRZ011583		DRZ012968

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0876
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.104
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0554
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.282
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0721
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.123
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.266
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0183
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00998
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0377
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.168
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0765
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.248
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.285
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11263

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.167
MA0003.1	MA0003.1	0.64
MA0004.1	MA0004.1	0.483
MA0006.1	MA0006.1	0.668
MA0007.1	MA0007.1	0.823
MA0009.1	MA0009.1	0.58
MA0014.1	MA0014.1	0.0946
MA0017.1	MA0017.1	0.977
MA0018.2	MA0018.2	0.344
MA0019.1	MA0019.1	0.429
MA0024.1	MA0024.1	0.532
MA0025.1	MA0025.1	0.432
MA0027.1	MA0027.1	0.778
MA0028.1	MA0028.1	1.57527e-4
MA0029.1	MA0029.1	0.0324
MA0030.1	MA0030.1	0.0735
MA0031.1	MA0031.1	0.946
MA0035.2	MA0035.2	0.00726
MA0038.1	MA0038.1	0.0354
MA0039.2	MA0039.2	1.65383e-4
MA0040.1	MA0040.1	0.992
MA0041.1	MA0041.1	0.701
MA0042.1	MA0042.1	0.722
MA0043.1	MA0043.1	0.27
MA0046.1	MA0046.1	0.815
MA0047.2	MA0047.2	0.313
MA0048.1	MA0048.1	0.175
MA0050.1	MA0050.1	5.22881e-8
MA0051.1	MA0051.1	9.58328e-9
MA0052.1	MA0052.1	0.616
MA0055.1	MA0055.1	5.41455e-7
MA0057.1	MA0057.1	0.599
MA0058.1	MA0058.1	0.829
MA0059.1	MA0059.1	0.374
MA0060.1	MA0060.1	4.88808e-7
MA0061.1	MA0061.1	0.568
MA0062.2	MA0062.2	2.65946e-4
MA0065.2	MA0065.2	0.811
MA0066.1	MA0066.1	0.944
MA0067.1	MA0067.1	0.45
MA0068.1	MA0068.1	0.0341
MA0069.1	MA0069.1	0.232
MA0070.1	MA0070.1	0.783
MA0071.1	MA0071.1	0.483
MA0072.1	MA0072.1	0.602
MA0073.1	MA0073.1	0.617
MA0074.1	MA0074.1	0.127
MA0076.1	MA0076.1	1.95397e-5
MA0077.1	MA0077.1	0.281
MA0078.1	MA0078.1	0.372
MA0079.2	MA0079.2	0.358
MA0080.2	MA0080.2	3.28273e-10
MA0081.1	MA0081.1	0.022
MA0083.1	MA0083.1	0.516
MA0084.1	MA0084.1	0.16
MA0087.1	MA0087.1	0.123
MA0088.1	MA0088.1	0.438
MA0090.1	MA0090.1	0.00511
MA0091.1	MA0091.1	0.136
MA0092.1	MA0092.1	0.0726
MA0093.1	MA0093.1	0.365
MA0099.2	MA0099.2	2.94515e-6
MA0100.1	MA0100.1	0.493
MA0101.1	MA0101.1	0.0125
MA0102.2	MA0102.2	0.0301
MA0103.1	MA0103.1	0.09
MA0104.2	MA0104.2	0.192
MA0105.1	MA0105.1	0.155
MA0106.1	MA0106.1	0.718
MA0107.1	MA0107.1	0.00625
MA0108.2	MA0108.2	0.0296
MA0111.1	MA0111.1	0.278
MA0112.2	MA0112.2	0.0362
MA0113.1	MA0113.1	0.905
MA0114.1	MA0114.1	0.623
MA0115.1	MA0115.1	0.156
MA0116.1	MA0116.1	0.00977
MA0117.1	MA0117.1	0.872
MA0119.1	MA0119.1	0.303
MA0122.1	MA0122.1	0.634
MA0124.1	MA0124.1	0.844
MA0125.1	MA0125.1	0.734
MA0131.1	MA0131.1	0.118
MA0135.1	MA0135.1	0.0277
MA0136.1	MA0136.1	5.29478e-7
MA0137.2	MA0137.2	0.164
MA0138.2	MA0138.2	0.00317
MA0139.1	MA0139.1	0.866
MA0140.1	MA0140.1	0.00719
MA0141.1	MA0141.1	0.638
MA0142.1	MA0142.1	0.294
MA0143.1	MA0143.1	0.457
MA0144.1	MA0144.1	0.944
MA0145.1	MA0145.1	0.327
MA0146.1	MA0146.1	0.235
MA0147.1	MA0147.1	0.145
MA0148.1	MA0148.1	0.574
MA0149.1	MA0149.1	0.0378
MA0150.1	MA0150.1	0.0269
MA0152.1	MA0152.1	0.746
MA0153.1	MA0153.1	0.857
MA0154.1	MA0154.1	0.00896
MA0155.1	MA0155.1	0.516
MA0156.1	MA0156.1	0.86
MA0157.1	MA0157.1	0.468
MA0159.1	MA0159.1	0.577
MA0160.1	MA0160.1	0.225
MA0162.1	MA0162.1	0.93
MA0163.1	MA0163.1	0.0126
MA0164.1	MA0164.1	0.345
MA0258.1	MA0258.1	0.271
MA0259.1	MA0259.1	0.0766

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11263

Novel motif	Logo	P-value
1	1	0.741
10	10	0.319
100	100	0.178
101	101	0.0558
102	102	0.592
103	103	0.327
104	104	0.79
105	105	0.886
106	106	0.00231
107	107	0.153
108	108	0.269
109	109	0.178
11	11	0.217
110	110	0.928
111	111	0.156
112	112	0.00776
113	113	0.186
114	114	0.957
115	115	0.561
116	116	0.2
117	117	0.544
118	118	0.0562
119	119	0.602
12	12	0.584
120	120	0.655
121	121	0.516
122	122	0.177
123	123	0.785
124	124	0.544
125	125	0.167
126	126	0.545
127	127	0.33
128	128	0.0289
129	129	0.94
13	13	0.212
130	130	0.579
131	131	0.392
132	132	0.658
133	133	0.0987
134	134	0.183
135	135	0.137
136	136	0.0292
137	137	0.236
138	138	0.306
139	139	0.458
14	14	0.239
140	140	0.0559
141	141	0.722
142	142	0.078
143	143	0.658
144	144	0.852
145	145	0.00483
146	146	0.934
147	147	0.664
148	148	0.646
149	149	0.16
15	15	0.227
150	150	0.334
151	151	0.356
152	152	0.352
153	153	0.463
154	154	0.235
155	155	0.214
156	156	0.337
157	157	0.589
158	158	0.784
159	159	0.194
16	16	0.213
160	160	0.174
161	161	0.967
162	162	0.624
163	163	0.919
164	164	0.32
165	165	0.517
166	166	0.662
167	167	0.656
168	168	0.254
169	169	0.888
17	17	0.461
18	18	0.727
19	19	0.177
2	2	0.307
20	20	0.0251
21	21	0.752
22	22	0.652
23	23	0.22
24	24	0.829
25	25	0.217
26	26	0.353
27	27	0.254
28	28	0.202
29	29	0.391
3	3	0.285
30	30	0.982
31	31	0.314
32	32	0.00281
33	33	0.85
34	34	0.361
35	35	0.00132
36	36	0.118
37	37	0.842
38	38	0.33
39	39	0.977
4	4	0.565
40	40	0.0562
41	41	0.149
42	42	0.0504
43	43	0.85
44	44	0.108
45	45	0.56
46	46	0.0698
47	47	0.982
48	48	0.896
49	49	0.445
5	5	0.373
50	50	0.245
51	51	0.237
52	52	0.897
53	53	0.447
54	54	0.251
55	55	0.944
56	56	0.42
57	57	0.656
58	58	0.283
59	59	0.0327
6	6	0.354
60	60	0.0839
61	61	0.00286
62	62	0.0767
63	63	0.629
64	64	0.68
65	65	0.685
66	66	4.49061e-7
67	67	0.738
68	68	0.0729
69	69	0.36
7	7	0.559
70	70	0.816
71	71	0.464
72	72	0.696
73	73	0.227
74	74	0.765
75	75	0.266
76	76	0.245
77	77	0.23
78	78	0.726
79	79	0.13
8	8	0.396
80	80	0.278
81	81	0.331
82	82	0.378
83	83	0.241
84	84	0.431
85	85	0.34
86	86	0.155
87	87	0.15
88	88	0.71
89	89	0.25
9	9	0.089
90	90	0.698
91	91	0.113
92	92	0.945
93	93	0.589
94	94	0.975
95	95	0.338
96	96	0.997
97	97	0.137
98	98	0.0908
99	99	0.6

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11263

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102219 adrenocortical carcinoma cell
FF:0102424 mesothelioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000150 (glandular epithelial cell)
0000163 (endocrine cell)
0000215 (barrier cell)
0000174 (steroid hormone secreting cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
0002097 (cortical cell of adrenal gland)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002369 (adrenal gland)
0002100 (trunk)
0001851 (cortex)
0001235 (adrenal cortex)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102219 (adrenocortical carcinoma cell)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005627
+|accession_numbers=CAGE;DRX007936;DRR008808;DRZ000233;DRZ001618;DRZ011583;DRZ012968
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002369,UBERON:0002100,UBERON:0001851,UBERON:0001235,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0005172,UBERON:0002530,UBERON:0006858,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0002078,CL:0000150,CL:0000163,CL:0000215,CL:0000174,CL:0000255,CL:0000077,CL:0002097
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:63505799..63505904,+!p1@ZNF727!1.43!26.00!ZNF727;;chr17:17726907..17726958,-!p2@SREBF1!1.38!137.15!SREBF1;;chr9:96717629..96717644,-!p1@BARX1!1.38!23.11!BARX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.36!36.41!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!24.85!TFAP2A;;chr19:22193731..22193751,-!p1@ZNF208!1.33!20.61!ZNF208;;chr6:29648890..29648944,-!p1@ZFP57!1.30!18.88!ZFP57;;chr19:9609272..9609297,-!p1@ZNF560!1.28!17.91!ZNF560;;chr5:2751762..2751784,-!p1@IRX2!1.27!17.72!IRX2;;chr8:11561684..11561751,+!p1@GATA4!1.26!17.34!GATA4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.14!ZBED1;;chr7:35293685..35293718,-!p1@TBX20!1.20!14.83!TBX20;;chr10:8096772..8096787,+!p2@GATA3!1.19!16.95!GATA3;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.41!TFAP2A;;chr10:8096631..8096660,+!p1@GATA3!1.13!15.22!GATA3;;chr6:126240380..126240430,+!p2@NCOA7!1.11!31.01!NCOA7;;chr19:37464453..37464515,+!p4@ZNF568!1.11!11.75!ZNF568;;chr11:32457075..32457095,-!p1@WT1!1.09!11.36!WT1;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!57.02!CREB3L1;;chr19:52956798..52956843,+!p1@ZNF578!1.05!20.80!ZNF578;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.03!9.82!ZNF676;;chr15:83953397..83953425,-!p1@BNC1!1.02!10.79!BNC1;;chr4:188916918..188916942,+!p1@ZFP42!1.02!9.44!ZFP42;;chr11:65686732..65686756,+!p2@DRAP1!1.01!39.49!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.00!11.36!FOXF1;;chr7:26191809..26191890,+!p1@NFE2L3!0.98!43.34!NFE2L3;;chr5:178368186..178368238,+!p1@ZNF454!0.92!13.48!ZNF454;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.32!FOSL1;;chr6:126240356..126240379,+!p7@NCOA7!0.90!8.67!NCOA7;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.10!RUNX3;;chr11:32457103..32457123,-!p3@WT1!0.88!6.55!WT1;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.55!YBX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.87!60.10!PPP1R13L;;chr19:53496768..53496799,-!p1@ZNF702P!0.86!10.02!ZNF702P;;chr6:85473156..85473210,-!p2@TBX18!0.86!7.70!TBX18;;chr19:58545369..58545404,+!p2@ZSCAN1!0.86!6.16!ZSCAN1;;chr4:299227..299272,-!p1@ZNF732!0.86!6.16!ZNF732;;chr8:67525473..67525518,-!p1@MYBL1!0.85!14.45!MYBL1;;chr1:203764633..203764674,+!p2@ZC3H11A!0.85!10.21!ZC3H11A;;chr11:65667846..65667868,-!p1@FOSL1!0.84!166.04!FOSL1;;chr15:67418047..67418093,+!p4@SMAD3!0.84!7.70!SMAD3;;chr20:42295713..42295738,+!p2@MYBL2!0.82!35.63!MYBL2;;chr19:53636125..53636178,-!p1@ZNF415!0.82!16.76!ZNF415;;chr5:72744445..72744466,-!p2@FOXD1!0.82!9.63!FOXD1;;chr4:174450089..174450153,-!p2@HAND2!0.82!5.59!HAND2;;chr19:9609247..9609262,-!p2@ZNF560!0.82!5.59!ZNF560;;chr17:46682321..46682362,-!p1@HOXB6!0.82!5.59!HOXB6;;chr19:22605136..22605154,-!p1@ZNF98!0.82!5.59!ZNF98;;chr19:52598958..52599026,-!p1@ZNF841!0.81!56.05!ZNF841;;chr12:54772960..54773015,-!p3@ZNF385A!0.81!28.70!ZNF385A;;chr1:44513995..44514031,+!p1@KLF17!0.81!5.39!KLF17;;chr3:128206762..128206781,-!p2@GATA2!0.80!36.02!GATA2;;chr11:65686802..65686818,+!p6@DRAP1!0.80!9.63!DRAP1;;chr5:134369905..134369972,-!p1@PITX1!0.79!8.28!PITX1;;chr8:67525443..67525459,-!p2@MYBL1!0.79!7.90!MYBL1;;chr6:10415484..10415508,-!p3@TFAP2A!0.79!5.20!TFAP2A;;chr20:2673383..2673441,+!p1@EBF4!0.78!8.28!EBF4;;chr6:126240442..126240459,+!p4@NCOA7!0.78!6.55!NCOA7;;chr7:5111723..5111807,+!p2@RBAK!0.78!5.01!RBAK;;chr8:55370487..55370503,+!p1@SOX17!0.78!5.01!SOX17;;chr9:126774018..126774055,+!p1@LHX2!0.78!5.01!LHX2;;chr19:56879653..56879743,+!p1@ZNF542!0.77!39.68!ZNF542;;chr20:50721803..50721857,-!p2@ZFP64!0.77!8.09!ZFP64;;chr19:38042240..38042309,+!p2@ZNF540!0.77!7.70!ZNF540;;chr12:54447599..54447630,+!p3@HOXC4!0.77!6.16!HOXC4;;chr19:56879534..56879615,+!p3@ZNF542!0.76!7.70!ZNF542;;chr15:67418119..67418162,+!p5@SMAD3!0.76!5.39!SMAD3;;chr6:10412576..10412599,-!p5@TFAP2A!0.76!4.82!TFAP2A;;chr7:27153454..27153469,-!p2@HOXA3!0.76!4.82!HOXA3;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.82!HOXC10;;chr8:106330656..106330684,+!p1@ZFPM2!0.75!13.10!ZFPM2;;chr19:58629742..58629787,-!p2@ZSCAN18!0.75!4.62!ZSCAN18;;chr3:69811882..69811898,+!p6@MITF!0.73!4.43!MITF;;chr19:58545454..58545498,+!p1@ZSCAN1!0.72!4.24!ZSCAN1;;chr3:141868357..141868393,-!p3@TFDP2!0.71!30.43!TFDP2;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.39!TFAP2C;;chr19:53758058..53758088,-!p2@ZNF677!0.70!14.64!ZNF677;;chr19:57352109..57352153,-!p2@ZIM2!0.70!4.05!ZIM2;;chr17:46687959..46688007,-!p2@HOXB7!0.69!5.59!HOXB7;;chr19:2867325..2867348,+!p1@ZNF556!0.69!3.85!ZNF556;;chr20:42295745..42295765,+!p1@MYBL2!0.68!71.85!MYBL2;;chr8:67525524..67525543,-!p3@MYBL1!0.68!6.74!MYBL1;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.20!BCL3;;chr7:19157043..19157088,-!p2@TWIST1!0.67!10.21!TWIST1;;chr11:615570..615721,-!p2@IRF7!0.67!7.90!IRF7;;chr19:22817119..22817145,+!p1@ZNF492!0.67!6.55!ZNF492;;chr19:22966925..22966958,-!p1@ZNF99!0.67!3.66!ZNF99;;chr2:176969228..176969260,+!p1@HOXD11!0.67!3.66!HOXD11;;chr2:63277948..63277974,+!p1@OTX1!0.67!3.66!OTX1;;chr9:124976185..124976212,-!p4@LHX6!0.67!3.66!LHX6;;chr9:96717678..96717689,-!p2@BARX1!0.67!3.66!BARX1;;chr16:30537839..30537929,-!p1@ZNF768!0.65!25.04!ZNF768;;chr5:178157651..178157689,-!p1@ZNF354A!0.65!16.37!ZNF354A;;chr20:55205825..55205847,+!p2@TFAP2C!0.65!3.47!TFAP2C;;chr12:54380404..54380433,+!p3@HOXC10!0.65!3.47!HOXC10;;chr17:46703687..46703740,-!p1@HOXB9!0.65!3.47!HOXB9;;chr8:60031762..60031803,-!p3@TOX!0.64!5.20!TOX;;chr17:17726892..17726903,-!p6@SREBF1!0.64!3.85!SREBF1;;chr19:19729477..19729542,-!p1@PBX4!0.63!7.70!PBX4;;chr20:50808667..50808729,-!p3@ZFP64!0.63!6.93!ZFP64;;chr1:41827095..41827155,+!p1@FOXO6!0.63!4.62!FOXO6;;chr5:142780237..142780261,-!p7@NR3C1!0.63!3.27!NR3C1;;chr17:17740287..17740307,-!p1@SREBF1!0.62!99.97!SREBF1;;chr7:27135591..27135658,-!p1@HOXA1!0.62!6.74!HOXA1;;chr10:8095593..8095625,+!p3@GATA3!0.62!3.85!GATA3;;chr5:178286925..178287007,+!p1@ZNF354B!0.61!20.61!ZNF354B;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.61!17.34!GLIS2;;chr19:22235279..22235301,+!p1@ZNF257!0.61!6.36!ZNF257;;chr7:19157248..19157268,-!p1@TWIST1!0.60!9.44!TWIST1;;chr9:114287433..114287513,+!p1@ZNF483!0.60!8.86!ZNF483;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.60!7.13!ZNF395;;chr11:65686776..65686787,+!p9@DRAP1!0.60!3.66!DRAP1;;chr17:46622229..46622257,-!p6@HOXB2!0.59!3.47!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!0.59!3.27!HOXB2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.59!2.89!PEG3;;chr18:53068911..53068935,-!p4@TCF4!0.58!3.27!TCF4;;chr17:70117153..70117174,+!p1@SOX9!0.57!34.67!SOX9;;chr3:150126759..150126784,+!p2@TSC22D2!0.57!14.83!TSC22D2;;chr11:65430554..65430579,-!p3@RELA!0.57!8.09!RELA;;chr2:46524474..46524491,+!p4@EPAS1!0.57!7.51!EPAS1;;chr3:5021268..5021282,+!p4@BHLHE40!0.57!6.36!BHLHE40;;chr10:8100691..8100732,+!p5@GATA3!0.57!2.70!GATA3;;chr12:54393880..54393962,+!p1@HOXC9!0.57!2.70!HOXC9;;chr21:38071430..38071456,+!p1@SIM2!0.57!2.70!SIM2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.57!2.70!SEBOX;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.70!NR3C1;;chr9:14314131..14314147,-!p2@NFIB!0.56!18.11!NFIB;;chr19:38146320..38146401,-!p1@ZFP30!0.56!17.53!ZFP30;;chr16:3493446..3493510,-!p1@ZNF597!0.56!14.25!ZNF597;;chr3:12329358..12329393,+!p3@PPARG!0.56!7.51!PPARG;;chr11:8102749..8102769,+!p2@TUB!0.56!5.78!TUB;;chr19:37464063..37464127,+!p2@ZNF568!0.56!3.66!ZNF568;;chr22:22863052..22863133,-!p1@ZNF280B!0.55!7.90!ZNF280B;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.36!SATB2;;chr3:129158854..129158883,-!p3@MBD4!0.54!15.22!MBD4;;chr1:33004996..33005017,+!p3@ZBTB8A!0.54!3.66!ZBTB8A;;chr19:22398533..22398542,-!p@chr19:22398533..22398542,-!0.54!2.50!ZNF676;;chr12:54380036..54380091,+!p4@HOXC10!0.54!2.50!HOXC10;;chr12:54447637..54447659,+!p4@HOXC4!0.54!2.50!HOXC4;;chr5:2751785..2751808,-!p2@IRX2!0.54!2.50!IRX2;;chr2:238600789..238600925,+!p1@LRRFIP1!0.53!61.45!LRRFIP1;;chr12:124873357..124873401,-!p1@NCOR2!0.53!35.63!NCOR2;;chr4:1873011..1873063,+!p2@WHSC1!0.52!9.63!WHSC1;;chr19:53496806..53496848,-!p2@ZNF702P!0.52!3.85!ZNF702P;;chr16:54320158..54320200,-!p5@IRX3!0.52!3.66!IRX3;;chr9:110251836..110251887,-!p4@KLF4!0.52!3.27!KLF4;;chr5:134369879..134369898,-!p2@PITX1!0.52!2.31!PITX1;;chr7:35293665..35293680,-!p2@TBX20!0.52!2.31!TBX20;;chr19:56879625..56879636,+!p5@ZNF542!0.52!2.31!ZNF542;;chr11:65668011..65668020,-!p3@FOSL1!0.52!2.31!FOSL1;;chr12:54447219..54447237,+!p6@HOXC4!0.52!2.31!HOXC4;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.52!2.31!SEBOX;;chr1:26496382..26496457,+!p1@ZNF593!0.51!176.63!ZNF593;;chr5:72744594..72744609,-!p1@FOXD1!0.51!12.91!FOXD1;;chr14:61116183..61116208,-!p1@SIX1!0.51!10.59!SIX1;;chr19:44331493..44331552,+!p1@ZNF283!0.51!10.02!ZNF283;;chr8:106330696..106330719,+!p2@ZFPM2!0.51!3.08!ZFPM2;;chrX:128657457..128657475,-!p1@SMARCA1!0.50!32.94!SMARCA1;;chr15:67357924..67357952,+!p2@SMAD3!0.50!18.68!SMAD3;;chr2:46524897..46524911,+!p2@EPAS1!0.50!7.51!EPAS1;;chr5:150284532..150284549,-!p1@ZNF300!0.50!5.39!ZNF300;;chr17:46688334..46688385,-!p1@HOXB7!0.50!3.47!HOXB7;;chr6:44233252..44233296,-!p1@NFKBIE!0.49!27.16!NFKBIE;;chr1:935467..935484,-!p1@HES4!0.49!11.75!HES4;;chr19:12203100..12203132,+!p1@ZNF788!0.49!5.01!ZNF788;;chr5:174151553..174151610,+!p1@MSX2!0.49!4.05!MSX2;;chr8:28243785..28243799,-!p6@ZNF395!0.49!2.70!ZNF395;;chr6:10412477..10412490,-!p10@TFAP2A!0.49!2.12!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.49!2.12!TFAP2A;;chr19:48773337..48773339,+!p2@ZNF114!0.49!2.12!ZNF114;;chr10:64134045..64134083,+!p3@ZNF365!0.49!2.12!ZNF365;;chr3:12329339..12329356,+!p5@PPARG!0.49!2.12!PPARG;;chr4:174451370..174451387,-!p1@HAND2!0.49!2.12!HAND2;;chr8:37553292..37553317,+!p1@ZNF703!0.48!64.53!ZNF703;;chr19:53935221..53935258,+!p1@ZNF761!0.48!27.54!ZNF761;;chr7:149470641..149470694,-!p1@ZNF467!0.48!11.94!ZNF467;;chr3:44771092..44771160,+!p1@ZNF501!0.48!10.59!ZNF501;;chr3:5021191..5021202,+!p3@BHLHE40!0.48!6.74!BHLHE40;;chr5:178157700..178157734,-!p3@ZNF354A!0.48!5.01!ZNF354A;;chr6:27356527..27356557,+!p2@ZNF391!0.48!3.08!ZNF391;;chr4:4291861..4291913,-!p1@LYAR!0.47!61.45!LYAR;;chr7:139762641..139762768,-!p1@PARP12!0.47!36.60!PARP12;;chr7:137686824..137686865,-!p2@CREB3L2!0.47!33.52!CREB3L2;;chr5:56247935..56247959,-!p1@MIER3!0.47!13.87!MIER3;;chr19:53360870..53360873,-!p1@ZNF468!0.47!9.25!ZNF468;;chr15:37390850..37390909,-!p3@MEIS2!0.47!4.62!MEIS2;;chr11:46299539..46299620,+!p2@CREB3L1!0.47!3.85!CREB3L1;;chr8:60031682..60031710,-!p2@TOX!0.47!3.66!TOX;;chr17:46655704..46655718,-!p2@HOXB4!0.47!3.27!HOXB4;;chr6:126240463..126240489,+!p6@NCOA7!0.47!2.31!NCOA7;;chr7:1577899..1577943,+!p3@MAFK!0.47!1.93!MAFK;;chr7:27170359..27170381,-!p1@HOXA4!0.47!1.93!HOXA4;;chr8:106331769..106331772,+!p8@ZFPM2!0.47!1.93!ZFPM2;;chr11:44331576..44331650,-!p1@ALX4!0.47!1.93!ALX4;;chr22:22874610..22874616,-!p1@ZNF280A!0.47!1.93!ZNF280A;;chr17:46655578..46655589,-!p4@HOXB4!0.47!1.93!HOXB4;;chr17:46703212..46703238,-!p2@HOXB9!0.47!1.93!HOXB9;;chr19:12624655..12624680,-!p4@ZNF709!0.47!1.93!ZNF709;;chr19:22605097..22605121,-!p2@ZNF98!0.47!1.93!ZNF98;;chr12:27485785..27485816,+!p1@ARNTL2!0.46!17.91!ARNTL2;;chr12:27485823..27485868,+!p2@ARNTL2!0.46!10.02!ARNTL2;;chr10:105110890..105110914,-!p2@PCGF6!0.46!8.86!PCGF6;;chr6:12008986..12009016,+!p3@HIVEP1!0.46!7.51!HIVEP1;;chr5:178322893..178322931,+!p1@ZFP2!0.46!3.08!ZFP2;;chr20:50179368..50179392,-!p2@NFATC2!0.46!2.70!NFATC2;;chr17:40540484..40540537,-!p2@STAT3!0.45!24.27!STAT3;;chr11:65687362..65687436,+!p3@DRAP1!0.45!11.17!DRAP1;;chr17:56065729..56065781,-!p2@VEZF1!0.45!10.40!VEZF1;;chr4:4861385..4861398,+!p1@MSX1!0.45!6.93!MSX1;;chr19:52674853..52674892,-!p2@ZNF836!0.45!6.16!ZNF836;;chr15:67357992..67358009,+!p3@SMAD3!0.45!5.59!SMAD3;;chr11:128392309..128392350,-!p3@ETS1!0.45!5.39!ETS1;;chr12:3068466..3068495,+!p3@TEAD4!0.45!4.82!TEAD4;;chr8:23540441..23540466,-!p1@NKX3-1!0.45!4.43!NKX3-1;;chr8:60031809..60031835,-!p4@TOX!0.45!2.50!TOX;;chr3:141087339..141087387,+!p2@ZBTB38!0.44!25.23!ZBTB38;;chr17:16472486..16472533,-!p1@ZNF287!0.44!11.75!ZNF287;;chr4:492909..492968,-!p2@ZNF721!0.44!10.59!ZNF721;;chr3:185826764..185826803,-!p2@ETV5!0.44!8.86!ETV5;;chr5:178487354..178487408,+!p1@ZNF354C!0.44!6.74!ZNF354C;;chr5:178157609..178157650,-!p2@ZNF354A!0.44!6.36!ZNF354A;;chr3:44754126..44754171,+!p1@ZNF502!0.44!5.59!ZNF502;;chr1:935398..935465,-!p2@HES4!0.44!4.43!HES4;;chr3:12330560..12330579,+!p1@PPARG!0.44!2.12!PPARG;;chr2:176994408..176994492,+!p1@HOXD8!0.44!1.73!HOXD8;;chr2:45168997..45169020,+!p4@SIX3!0.44!1.73!SIX3;;chr3:69811858..69811881,+!p5@MITF!0.44!1.73!MITF;;chr9:124976328..124976372,-!p2@LHX6!0.44!1.73!LHX6;;chr16:3493528..3493539,-!p2@ZNF597!0.44!1.73!ZNF597;;chr17:48046543..48046575,+!p2@DLX4!0.44!1.73!DLX4;;chr19:2867298..2867317,+!p2@ZNF556!0.44!1.73!ZNF556;;chr9:126773880..126773895,+!p2@LHX2!0.44!1.73!LHX2;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.44!1.73!ZNF177;;chr12:54332608..54332636,+!p1@HOXC13!0.44!1.73!HOXC13;;chr12:54378864..54378884,+!p6@HOXC10!0.44!1.73!HOXC10;;chr9:35732647..35732678,+!p2@CREB3!0.43!12.91!CREB3;;chr15:37392724..37392757,-!p1@MEIS2!0.43!10.59!MEIS2;;chr19:53289995..53290050,-!p1@ZNF600!0.43!9.44!ZNF600;;chr19:52391147..52391218,-!p1@ZNF577!0.43!6.93!ZNF577;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.43!2.50!GLIS2;;chr15:37392094..37392116,-!p6@MEIS2!0.43!2.31!MEIS2;;chr17:41623075..41623101,-!p9@ETV4!0.43!2.12!ETV4;;chr17:46622205..46622218,-!p3@HOXB2!0.43!2.12!HOXB2;;chr5:16465902..16465917,-!p1@ZNF622!0.42!56.82!ZNF622;;chr6:126112074..126112144,+!p1@NCOA7!0.42!31.78!NCOA7;;chr19:52901094..52901134,+!p1@ZNF528!0.42!15.41!ZNF528;;chr20:25677465..25677497,-!p1@ZNF337!0.42!14.25!ZNF337;;chr19:58694421..58694485,+!p1@ZNF274!0.42!11.94!ZNF274;;chr19:36909528..36909581,-!p1@ZFP82!0.42!10.40!ZFP82;;chr19:45252008..45252024,+!p2@BCL3!0.42!7.32!BCL3;;chr4:10458982..10459007,-!p2@ZNF518B!0.42!7.13!ZNF518B;;chr1:40915725..40915808,+!p1@ZNF643!0.42!6.36!ZNF643;;chr19:53662295..53662319,-!p1@ZNF347!0.42!5.39!ZNF347;;chr18:51750928..51750942,-!p4@MBD2!0.42!5.20!MBD2;;chr19:33864571..33864596,+!p2@CEBPG!0.42!5.20!CEBPG;;chr19:35417798..35417842,+!p1@ZNF30!0.42!3.27!ZNF30;;chr11:707063..707088,-!p4@DEAF1!0.42!2.31!DEAF1;;chr19:52490043..52490113,-!p1@ZNF350!0.41!17.72!ZNF350;;chr5:43121711..43121753,+!p2@ZNF131!0.41!6.16!ZNF131;;chrX:153363188..153363203,-!p2@MECP2!0.41!4.82!MECP2;;chr8:72756063..72756125,-!p1@MSC!0.41!4.05!MSC;;chr8:28243813..28243839,-!p4@ZNF395!0.41!3.47!ZNF395;;chr3:157823517..157823562,-!p1@SHOX2!0.41!1.73!SHOX2;;chr4:38665769..38665801,+!p2@KLF3!0.40!20.23!KLF3;;chr3:44690211..44690267,+!p1@ZNF35!0.40!19.26!ZNF35;;chr8:145980808..145980922,-!p1@ZNF251!0.40!16.18!ZNF251;;chr19:50529247..50529296,+!p1@ZNF473!0.40!14.25!ZNF473;;chr17:7382935..7382961,-!p2@ZBTB4!0.40!13.29!ZBTB4;;chr19:21579908..21579949,+!p1@ZNF493!0.40!13.29!ZNF493;;chr12:80084303..80084332,-!p1@PAWR!0.40!12.91!PAWR;;chr19:56904880..56904919,-!p1@ZNF582!0.40!4.82!ZNF582;;chr12:133706820..133706881,-!p1@ZNF891!0.40!4.05!ZNF891;;chr1:151032782..151032801,+!p4@MLLT11!0.40!3.85!MLLT11;;chr5:72744562..72744573,-!p3@FOXD1!0.40!2.12!FOXD1;;chr6:28321909..28321965,-!p3@ZNF323!0.40!1.54!ZNF323;;chr6:28321971..28321995,-!p1@ZNF323!0.40!1.54!ZNF323;;chr9:124976154..124976177,-!p5@LHX6!0.40!1.54!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+|ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=FF:0101120,FF:0102424
 |fonse_cell_line_closure=FF:0101120,FF:0102424
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10493-107B7
 |is_a=EFO:0002091;;FF:0000210;;FF:0102219;;FF:0102424
 |is_obsolete=
+|library_id=CNhs11263
+|library_id_phase_based=2:CNhs11263
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10493
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10493
 |name=mesothelioma cell line:ACC-MESO-1
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11263,LSID758,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=107
 |rna_catalog_number=
@@ Line 60: / Line 78: @@
 |rna_weight_ug=50.6495
 |sample_age=61
+|sample_category=cell lines
 |sample_cell_catalog=RCB2292
 |sample_cell_line=ACC-MESO-1
@@ Line 81: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10493-107B7;search_select_hide=table117:FF:10493-107B7
 }}

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Latest revision as of 14:27, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0